BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0024.p (292 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL26.1 B3KL26_9BACI Rod shape-determining protein MreC 320 1e-85 B1DDR4.1 B1DDR4_9BACL Rod shape-determining protein MreC 287 6e-76 C0ZAK2.1 C0ZAK2_BREBN Rod shape-determining protein 196 2e-48 B7GIQ2.1 B7GIQ2_ANOFW Cell shape-determining protein 187 1e-45 C3IY47.1 C3IY47_9BACI Rod shape-determining protein MreC 182 3e-44 >B3KL26.1 B3KL26_9BACI Rod shape-determining protein MreC Length = 290 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 152/270 (56%), Positives = 200/270 (74%), Gaps = 1/270 (0%) Query: 20 LVMFIVVMGFSLGTRKSLSWPENFLRDTTGFVQNLFYKPAGYVAGLFQDIGNLHKLAEEN 79 LV FI +MGF+LG R SLSWPE F++DT GFVQ++FYKPA Y+AG F+D+ N+ + EEN Sbjct: 19 LVAFIAIMGFTLGPRASLSWPEKFVKDTVGFVQSVFYKPAAYIAGFFEDVRNMKAIYEEN 78 Query: 80 KELKILAAQYAREKAQYNFIKAQNDQYQIDLKFTNAQKNLYKYDYRIANVVSLTTEPSNN 139 +EL+ AQY+RE A YN +KA + + +L FT QKN KY+YR A V+S+ ++P+N Sbjct: 79 EELRRAVAQYSRESANYNNMKANYEALKDELHFTENQKNRDKYEYRTAQVLSVNSDPNNR 138 Query: 140 TLVIDLGAKDGIKLNMSVTSVEGLVGVISQVSNFTSTVKLMTMMDVNDPNSQPPIAATAF 199 TLVIDLG +DG++ NMSVT+V+G+VG+IS VSNFTSTVKL+T MD DPN Q PI+ TA Sbjct: 139 TLVIDLGERDGVRPNMSVTTVDGMVGIISNVSNFTSTVKLLTTMDAQDPNPQ-PISVTAI 197 Query: 200 NKEGNTFGMIESYDQQSGMLMMNKIPVGNPVAKGDTIISSGIGGVYPRGMTIGTVESVKV 259 KE TFG++ESYD+++ L+M +I +P+ + D IISSG GGV P+GM IG V SV+ Sbjct: 198 GKEDKTFGVVESYDEKTNTLLMTRISEDDPIKEKDKIISSGAGGVIPQGMIIGKVLSVQT 257 Query: 260 GEYGLTSTAIIKPAAGFQDWKELFVVFTEE 289 +YG + TA I+PAA F DWK L VV T E Sbjct: 258 SQYGQSRTATIEPAAKFDDWKYLTVVITPE 287 >B1DDR4.1 B1DDR4_9BACL Rod shape-determining protein MreC Length = 278 Score = 287 bits (735), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 137/266 (51%), Positives = 193/266 (72%), Gaps = 1/266 (0%) Query: 20 LVMFIVVMGFSLGTRKSLSWPENFLRDTTGFVQNLFYKPAGYVAGLFQDIGNLHKLAEEN 79 L++FI V+GFSL RK L+WPE FL D+ GF Q FYKPAG VAG F+DI L L EEN Sbjct: 6 LILFIAVIGFSLSDRKELTWPEKFLGDSVGFAQQWFYKPAGLVAGFFEDIRELKTLHEEN 65 Query: 80 KELKILAAQYAREKAQYNFIKAQNDQYQIDLKFTNAQKNLYKYDYRIANVVSLTTEPSNN 139 ++LK+ AA YAR+K YNF++ +N++ Q +L FT QKN+YKY+Y IA V+++ +P N+ Sbjct: 66 EQLKLTAAAYARDKINYNFVQKENERLQEELHFTERQKNMYKYNYLIAQVIAIDNDPYNH 125 Query: 140 TLVIDLGAKDGIKLNMSVTSVEGLVGVISQVSNFTSTVKLMTMMDVNDPNSQPPIAATAF 199 T+VI+LG+K+GIK NM+VT+++GLVG++S V +T+TV +T +D P S IAAT Sbjct: 126 TMVINLGSKNGIKPNMAVTTIDGLVGLVSNVRPYTATVTPLTELDDTSPTSN-AIAATVL 184 Query: 200 NKEGNTFGMIESYDQQSGMLMMNKIPVGNPVAKGDTIISSGIGGVYPRGMTIGTVESVKV 259 +E +FG++ SYD+++ L+M KI + + DT+I+SG+G VYPRG+ IGTVE+ +V Sbjct: 185 GRENESFGIVGSYDKETDRLIMTKIAENDKMIVDDTVITSGLGNVYPRGLVIGTVETRQV 244 Query: 260 GEYGLTSTAIIKPAAGFQDWKELFVV 285 G++GLT TA IK AA F E+FVV Sbjct: 245 GDFGLTHTATIKMAAKFDHLTEVFVV 270 >C0ZAK2.1 C0ZAK2_BREBN Rod shape-determining protein Length = 317 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 109/269 (40%), Positives = 158/269 (58%), Gaps = 6/269 (2%) Query: 20 LVMFIVVMGFSLGTRKSLSWPENFLRDTTGFVQNLFYKPAGYVAGLFQDIGNLHKLAEEN 79 LV+ I V+GF+ R SL+WPE F +DT VQ FY+PA V+G FQ+I + + EEN Sbjct: 16 LVLLISVVGFTSRERVSLTWPEMFFKDTFSVVQGFFYRPAQAVSGFFQEIEEAYGVYEEN 75 Query: 80 KELKILAAQYAREKAQYNFIKAQNDQYQIDLKFTNAQKNLYKYDYRIANVVSLTTEPSNN 139 K LK QYAR A+ + +KA ND+ + + A+ +L Y+ A VV+ + NN Sbjct: 76 KALKASLDQYARLSAELHTLKADNDRLR---EMVGAKDSLKSYNLHFAEVVARNPDTWNN 132 Query: 140 TLVIDLGAKDGIKLNMSVTSVEGLVGVISQVSNFTSTVKLMTMMDVNDPNSQPPIAATAF 199 + ID G K GIK +M+V + +G+VG I V+NF++TV+L+T + D S + Sbjct: 133 VVTIDQGLKSGIKKDMAVITAKGMVGRIQSVANFSATVELLTSYERRDHISADILTEQIV 192 Query: 200 NKE---GNTFGMIESYDQQSGMLMMNKIPVGNPVAKGDTIISSGIGGVYPRGMTIGTVES 256 + + G+IE YD Q +L+M KIP G + K +ISSG+GGV PR + IG + Sbjct: 193 DGKPMYRQVSGVIEEYDAQKRLLVMRKIPWGQAIKKDQQVISSGLGGVVPRNLPIGYIVR 252 Query: 257 VKVGEYGLTSTAIIKPAAGFQDWKELFVV 285 V+ +YGLT TA I+P+A F E+ VV Sbjct: 253 VEPDDYGLTQTAYIQPSADFSQLNEVMVV 281 >B7GIQ2.1 B7GIQ2_ANOFW Cell shape-determining protein Length = 286 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 96/267 (35%), Positives = 162/267 (60%), Gaps = 9/267 (3%) Query: 19 ALVMFIVVMGFSLGTRKSLSWPENFLRDTTGFVQNLFYKPAGYVAGLFQDIGNLHKLAEE 78 ++++ + ++GFSL RK LSW E F +DT F+Q++ +KPA +VAG F+++ +L EE Sbjct: 16 SIMVLVALIGFSLKERKELSWIEKFTKDTVVFMQSIVHKPAQFVAGFFENVNDLRHTYEE 75 Query: 79 NKELKILAAQYAREKAQYNFIKAQNDQYQIDLKFTNAQKNLYKYDYRIANVVSLTTEPSN 138 NK LK QY +++ +K +N++ + + N +++L + A V+ + Sbjct: 76 NKRLKEHLEQYVLLQSEVESLKKENERLR---ELLNKKESLRDFVAIQATVIGRNPDRWE 132 Query: 139 NTLVIDLGAKDGIKLNMSVTSVEGLVGVISQVSNFTSTVKLMTMMDVNDPNSQPPIAATA 198 TL+++ G++ G+K NM+V + +GL+G + VS F++TV+L++ D Q I+A Sbjct: 133 ETLIVNKGSQHGVKKNMAVITPQGLIGKVRSVSPFSATVQLLSAKD-----RQNRISAFI 187 Query: 199 FNKEGNTFGMIESYDQQSGMLMMNKIPVGNPVAKGDTIISSGIGGVYPRGMTIGTVESVK 258 E N FG+IE YD++ L++ +IP + KG + +SG+GG++P+G+ IG VE V Sbjct: 188 QGDE-NVFGLIEGYDEERETLLLKRIPYDAKIEKGQRVFTSGLGGIFPKGLFIGEVEEVV 246 Query: 259 VGEYGLTSTAIIKPAAGFQDWKELFVV 285 EYGLT A IKPAA F D ++ +V Sbjct: 247 ADEYGLTQIAYIKPAANFYDIDDVIIV 273 >C3IY47.1 C3IY47_9BACI Rod shape-determining protein MreC Length = 288 Score = 182 bits (462), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 94/267 (35%), Positives = 164/267 (61%), Gaps = 9/267 (3%) Query: 19 ALVMFIVVMGFSLGTRKSLSWPENFLRDTTGFVQNLFYKPAGYVAGLFQDIGNLHKLAEE 78 ++V+ ++++GFSL +R+ L+WPE F++DT GFVQ LF KPA +AG F+++ +L + +E Sbjct: 16 SIVILVMLIGFSLRSREELTWPEQFVKDTVGFVQLLFGKPAQEIAGFFENVSDLRRTYKE 75 Query: 79 NKELKILAAQYAREKAQYNFIKAQNDQYQIDLKFTNAQKNLYKYDYRIANVVSLTTEPSN 138 N+ LK +YA + + ++ +N++ + L + +++L + A V+ + Sbjct: 76 NELLKARLEEYAALETEVEALRQENERLRALL---DKKESLRDFVSIQATVIGRNPDRWR 132 Query: 139 NTLVIDLGAKDGIKLNMSVTSVEGLVGVISQVSNFTSTVKLMTMMDVNDPNSQPPIAATA 198 T++I+ G + G+K +M+V + GLVG + S FTSTV+L++ +D N+ I+A Sbjct: 133 ETIIINKGEQHGVKKDMAVITPAGLVGKVQHASQFTSTVQLLSALDQNN-----RISAYI 187 Query: 199 FNKEGNTFGMIESYDQQSGMLMMNKIPVGNPVAKGDTIISSGIGGVYPRGMTIGTVESVK 258 KE N FG+IE YD++ L++ +IP+ V K +++SG+GGV+P+G+ IG V VK Sbjct: 188 QGKE-NVFGLIEGYDEKRRELLLGEIPIDAKVEKRQKVLTSGLGGVFPKGLPIGEVTEVK 246 Query: 259 VGEYGLTSTAIIKPAAGFQDWKELFVV 285 +YGLT +KP A D ++ +V Sbjct: 247 PDQYGLTKVVYVKPFANLYDIDDVMIV 273 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,556,496,257 Number of extensions: 62562276 Number of successful extensions: 168438 Number of sequences better than 1.0e-05: 911 Number of HSP's gapped: 167542 Number of HSP's successfully gapped: 911 Length of query: 292 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 158 Effective length of database: 1,798,280,193 Effective search space: 284128270494 Effective search space used: 284128270494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)