BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0023.p (176 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL27.1 B3KL27_9BACI Cell-shape determining protein 211 2e-53 B1DDR3.1 B1DDR3_9BACL Rod shape-determining protein MreD 127 3e-28 C0ZAK3.1 C0ZAK3_BREBN Putative rod shape-determining protein 83 1e-14 A8VZE1.1 A8VZE1_9BACI TRAP transporter, 4TM/12TM fusion protein 65 3e-09 Q9K8H7.1 Q9K8H7_BACHD Cell-shape determining protein 63 1e-08 >B3KL27.1 B3KL27_9BACI Cell-shape determining protein Length = 175 Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 94/156 (60%), Positives = 126/156 (80%) Query: 20 GTIMPWLLPNAWEMRIIPNLVFIVILFVTVYHHRHTALILGLTFGMLHDVVFYGRILGAH 79 GT++ WL P++ +++I PN V + + FV++Y+HRHT L+LGL FGMLHD+V+YG ++G + Sbjct: 20 GTVVFWLTPSSLQLQIYPNFVLVCLFFVSIYYHRHTGLVLGLLFGMLHDIVYYGEMIGTY 79 Query: 80 SFAMGVSAYLIGLIFQLPRAPLPLMMTVVLLGSLLEDSVLFAIYSVFNLSRVSYDWALLH 139 SFAMGVSAYL+GL+F+ PRAPLP+MMT+V+LGSLL DS LF IY VF L+ SY+W+LLH Sbjct: 80 SFAMGVSAYLVGLVFKSPRAPLPMMMTIVILGSLLFDSTLFGIYKVFRLNPTSYNWSLLH 139 Query: 140 HMLPTMLFHFAVALLLYVPLRKQIEQLKKETRKEEA 175 HMLP +L HFA AL +YVPLRKQIE + K R++ Sbjct: 140 HMLPNLLVHFAFALAIYVPLRKQIELVTKNQRRKAT 175 >B1DDR3.1 B1DDR3_9BACL Rod shape-determining protein MreD Length = 177 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 103/158 (65%), Gaps = 3/158 (1%) Query: 19 EGTIMPWLLPNAWEMRIIPNLVFIVILFVTVYHHRHTALILGLTFGMLHDVVFYGRILGA 78 EG IMPWL+P RI+P+ +F+ ++F +Y RH AL G++FG L D++++G ++G Sbjct: 20 EGAIMPWLIPIELTGRIVPHFMFVFVVFSALYSGRHRALFFGISFGFLQDIIYFGHLMGV 79 Query: 79 HSFAMGVSAYLIGLIFQLPRAPLPLMMTVVLLGSLLEDSVLFAIYSVFNLSRVSYDWALL 138 ++F+MG+ Y G++ + R+ L ++VV LGS+L D++++ + VF +++ +Y WAL+ Sbjct: 80 NAFSMGLIGYYTGVLLERRRSTLLTALSVVGLGSILYDTIVYFVNMVFRITKETYAWALM 139 Query: 139 HHMLPTMLFHFAVALLLYVPLRKQIE---QLKKETRKE 173 H+LP++ AL +YVP R+ E +L ++ +E Sbjct: 140 DHILPSLFLQLVFALAVYVPARRLFESHLKLNPDSDEE 177 >C0ZAK3.1 C0ZAK3_BREBN Putative rod shape-determining protein Length = 174 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 87/159 (54%), Gaps = 5/159 (3%) Query: 19 EGTIMPWLLPNAWEMR--IIPNLVFIVILFVTVYHHRHTALILGLTFGMLHDVVFYGRIL 76 EGT+M P+AW + +P + +F+++Y R L G+ FG L DV+F G+++ Sbjct: 17 EGTVMQVFSPDAWGLSWLTVPRFALVCCIFISMYLGRREGLYYGIAFGFLQDVLF-GQLI 75 Query: 77 GAHSFAMGVSAYLIGLIFQLPRAPLPLMMTVVLLGSLLEDSVLFAIYSVFNLSRVSYDWA 136 G ++ +M V++Y G+I L + ++ L + +L++++ +F+ + W Sbjct: 76 GIYTMSMMVASYFAGMIVLLFQRGFGMVFITSFLILFGHEWLLYSLFRLFSAAPFDVRWI 135 Query: 137 LLHHMLPTMLFHFAVALLLYVPLRKQIEQL--KKETRKE 173 L H +LP++LF+ A LL+Y P++ ++ KKE + Sbjct: 136 LTHQILPSVLFNLAFGLLVYFPIKNVCNKILAKKEMHMQ 174 >A8VZE1.1 A8VZE1_9BACI TRAP transporter, 4TM/12TM fusion protein Length = 175 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/158 (22%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 19 EGTIMPWLLPN--AWEMRIIPNLVFIVILFVTVYHHRHTALILGLTFGMLHDVVFYGRIL 76 EGT+ P+ + IP L+F++I+ ++ R L+ + FG +D+V Y +L Sbjct: 18 EGTVYQVFAPDFRGSDQLYIPRLLFMLIITAGIFRGRGYGLLYAVIFGAFYDIV-YSEVL 76 Query: 77 GAHSFAMGVSAYLIGLIFQLPRAPLPLMMTVVLLGSLLEDSVLFAIYSVFNLSRVSYDWA 136 G ++F MG +AY + L + + + L +++ + + + ++ + S+ ++ VS+++ Sbjct: 77 GVYTFGMGFTAYFLSLSYPVVKRNLSIVVAITVFAVAFLEYYVYGMMSLVGITTVSHEFF 136 Query: 137 LLHHMLPTMLFHFAVALLLYVPLRKQIEQLKKETRKEE 174 ++PT++ + + ++L PL+K + ++ E Sbjct: 137 FWSRLVPTLIMNAVIIIVLVWPLKKWFDYVETRLSHSE 174 >Q9K8H7.1 Q9K8H7_BACHD Cell-shape determining protein Length = 174 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 81/158 (51%), Gaps = 3/158 (1%) Query: 19 EGTIMPWLLPN--AWEMRIIPNLVFIVILFVTVYHHRHTALILGLTFGMLHDVVFYGRIL 76 EGT+ ++ A E+ I+P + ++++F+ +Y R + + GL FG+L DVV Y ++ Sbjct: 17 EGTLFQLVITERFASEIMIVPRFLIVMLVFIGIYLGRWSGALYGLIFGLLFDVV-YTDLI 75 Query: 77 GAHSFAMGVSAYLIGLIFQLPRAPLPLMMTVVLLGSLLEDSVLFAIYSVFNLSRVSYDWA 136 G + F + Y L ++ + +T+ L L + + + + L+ + + Sbjct: 76 GVYMFGFALLGYGFALTYKWLQYSNLTQVTLAFLAVFLFEYYQYGLLQIIGLTEMDHTMF 135 Query: 137 LLHHMLPTMLFHFAVALLLYVPLRKQIEQLKKETRKEE 174 H +LPT+ + A A+L+ +P+RK ++ + K R E Sbjct: 136 FQHRLLPTLALNGAFAILMVLPMRKLLQYVLKMARFRE 173 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.144 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 952,562,682 Number of extensions: 37966945 Number of successful extensions: 173194 Number of sequences better than 1.0e-05: 119 Number of HSP's gapped: 173129 Number of HSP's successfully gapped: 119 Length of query: 176 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 50 Effective length of database: 1,873,648,313 Effective search space: 93682415650 Effective search space used: 93682415650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 126 (53.1 bits)