BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0022.p (219 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL28.1 B3KL28_9BACI Septum site-determining protein MinC 309 9e-83 B1DDR2.1 B1DDR2_9BACL Septum site-determining protein MinC 254 3e-66 C0ZAK5.1 C0ZAK5_BREBN Probable septum site-determining protein MinC 214 4e-54 C5D5H3.1 C5D5H3_9BACI Septum site-determining protein MinC 186 1e-45 A4IRD5.1 MINC_GEOTN Probable septum site-determining protein minC 175 2e-42 >B3KL28.1 B3KL28_9BACI Septum site-determining protein MinC Length = 220 Score = 309 bits (792), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 155/222 (69%), Positives = 186/222 (83%), Gaps = 5/222 (2%) Query: 1 MTVQSKHVRIKGIKDGLVFLLDDKCPFEDLLSELRYKLEHSHQNILTGPIVHVDIKLGNR 60 M V+S HV IKGIKDGLVFLLDD+C E+LL ELRYKLEHSHQNILTGPI+HVD+KLG+R Sbjct: 1 MAVKSNHVTIKGIKDGLVFLLDDQCELEELLGELRYKLEHSHQNILTGPIIHVDVKLGSR 60 Query: 61 SVSEEEKEAVLDILKSQGNLLVRSVEALEEPGGKD---TDALFMVSGMIRSGQVLHHEGN 117 +SEEEK+ +LDILK +GNLL+R+VE+ P + + L + +GM+RSGQVLHH+G+ Sbjct: 61 QISEEEKQTILDILKQKGNLLIRNVES--PPLASELVPEEKLALKTGMVRSGQVLHHDGD 118 Query: 118 LLFLGDVNPGGSITCTGDIYILGALRGMAHAGVGGNQESIIAASLLSPTQLRIADVISRP 177 LLFLGDVNPGG+ITCTGDIYILGALRG AHAGV GN+E+IIAAS +PTQLRI+ +ISRP Sbjct: 119 LLFLGDVNPGGTITCTGDIYILGALRGTAHAGVEGNEEAIIAASYFAPTQLRISQMISRP 178 Query: 178 PDEWGTRESSMEFAYLSSGAMQIDKIHNIVKLRQGLNVFKGV 219 PDEW TRE+ MEFAYL G+M+IDKI NI +L + NVFKGV Sbjct: 179 PDEWETRETVMEFAYLKDGSMEIDKISNISRLGRDFNVFKGV 220 >B1DDR2.1 B1DDR2_9BACL Septum site-determining protein MinC Length = 218 Score = 254 bits (650), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 118/211 (55%), Positives = 163/211 (77%), Gaps = 3/211 (1%) Query: 3 VQSKHVRIKGIKDGLVFLLDDKCPFEDLLSELRYKLEHSHQNILTGPIVHVDIKLGNRSV 62 + +H+ IKG+K+GLVFLLDDKC F LL EL+YKLE +HQ +LTGP+VHV +KLG R + Sbjct: 2 TEKQHIMIKGVKEGLVFLLDDKCEFAVLLDELQYKLEKTHQQLLTGPLVHVHVKLGARQL 61 Query: 63 SEEEKEAVLDILKSQGNLLVRSVE---ALEEPGGKDTDALFMVSGMIRSGQVLHHEGNLL 119 E++KE + +++SQGNL+V+S+E A ++ +++G++RSGQ + H+G+LL Sbjct: 62 GEDDKERIKSVIRSQGNLMVQSIESSSAGQDGANTAPAGPHVITGIVRSGQTIEHDGDLL 121 Query: 120 FLGDVNPGGSITCTGDIYILGALRGMAHAGVGGNQESIIAASLLSPTQLRIADVISRPPD 179 GDVNPGG+I C+GDIY++GALRG+AHAGV G + IIAASL+ PTQLRIADVISRPP+ Sbjct: 122 LAGDVNPGGTILCSGDIYVMGALRGVAHAGVNGRPDVIIAASLMRPTQLRIADVISRPPE 181 Query: 180 EWGTRESSMEFAYLSSGAMQIDKIHNIVKLR 210 EW + +++MEFAYL G MQIDK+ + +LR Sbjct: 182 EWMSGDAAMEFAYLYEGNMQIDKMTQLFRLR 212 >C0ZAK5.1 C0ZAK5_BREBN Probable septum site-determining protein MinC Length = 233 Score = 214 bits (545), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 105/217 (48%), Positives = 153/217 (70%), Gaps = 6/217 (2%) Query: 2 TVQSKHVRIKGIKDGLVFLLDDKCPFEDLLSELRYKLEHSHQNILTGPIVHVDIKLGNRS 61 TV+SK V IKG K+GLVF +DD C F++LL+++R K+EHSHQ IL+GP++ V IKLG R Sbjct: 11 TVKSK-VTIKGTKEGLVFFMDDTCSFDELLADMREKIEHSHQQILSGPLIRVSIKLGKRY 69 Query: 62 VSEEEKEAVLDILKSQGNLLVRSVEA----LEEPGGKDTDALFMVS-GMIRSGQVLHHEG 116 S E++E + I++++GNL++ ++E+ EE + F + +RSGQVL +G Sbjct: 70 CSPEQQEQLTQIIRTKGNLVIHTIESDLITREEAMAERLKTHFSIQVNTVRSGQVLEFDG 129 Query: 117 NLLFLGDVNPGGSITCTGDIYILGALRGMAHAGVGGNQESIIAASLLSPTQLRIADVISR 176 +LL LGDVNPGG++ TG IY+LG LRG AHAG+ G+ + IIAA+++SPTQLRIA+VIS+ Sbjct: 130 DLLLLGDVNPGGTVRSTGSIYVLGHLRGYAHAGISGDSQVIIAAAVMSPTQLRIAEVISK 189 Query: 177 PPDEWGTRESSMEFAYLSSGAMQIDKIHNIVKLRQGL 213 P +EW EFAYL + M + K++ + ++R L Sbjct: 190 PGEEWTNNSGGTEFAYLENEIMLVAKMNYLSRIRPEL 226 >C5D5H3.1 C5D5H3_9BACI Septum site-determining protein MinC Length = 238 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 97/224 (43%), Positives = 146/224 (65%), Gaps = 6/224 (2%) Query: 1 MTVQSKHVRIKGIKDGLVFLLDDKCPFEDLLSELRYKLEHSHQNILTGPIVHVDIKLGNR 60 +T +++ IKG KDGL LDD C ++DLL EL KL S + GP+V V +K+GNR Sbjct: 13 VTKPKQYITIKGTKDGLTLHLDDTCSYDDLLKELEEKLTVSEKAESDGPLVSVHLKVGNR 72 Query: 61 SVSEEEKEAVLDILKSQGNLLVRSVEA-----LEEPGGKDTDALFMVSGMIRSGQVLHHE 115 ++ E++E + +++ + NL+V S+E+ E K + VS ++RSGQVLH E Sbjct: 73 YLTPEQEEELRTLIRRKKNLVVESIESNVITKKEALEWKRKTEIVSVSKIVRSGQVLHVE 132 Query: 116 GNLLFLGDVNPGGSITCTGDIYILGALRGMAHAGVGGNQESIIAASLLSPTQLRIADVIS 175 G+LL +GDVNPGG++ G+I+ILGALRG+AHAG GN+E++IAAS++ PTQLRI+DV++ Sbjct: 133 GDLLLIGDVNPGGTVIAGGNIFILGALRGIAHAGYYGNKEAVIAASIMKPTQLRISDVMN 192 Query: 176 RPPDEWGTRESSMEFAYLSS-GAMQIDKIHNIVKLRQGLNVFKG 218 R PD + ME AY+ + +D++ ++ LR L +G Sbjct: 193 RAPDYKTDERNEMECAYIDDHNQIVVDRLQLLMHLRPNLTRLEG 236 >A4IRD5.1 MINC_GEOTN Probable septum site-determining protein minC Length = 227 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 137/216 (63%), Gaps = 6/216 (2%) Query: 4 QSKHVRIKGIKDGLVFLLDDKCPFEDLLSELRYKLEHSHQNILTGPIVHVDIKLGNRSVS 63 + ++V IKG KDGL LDD+C ++DL+ E+ +L P+V V +K+GNR ++ Sbjct: 5 KQQYVTIKGTKDGLTLYLDDRCSYDDLMKEIEERLVKRSSVAANSPLVSVHLKVGNRYLT 64 Query: 64 EEEKEAVLDILKSQGNLLVRSVEA-----LEEPGGKDTDALFMVSGMIRSGQVLHHEGNL 118 ++E + +++ NL+V S+E+ E + VS ++RSGQVLH EG+L Sbjct: 65 PAQEEELRALIRRSKNLVVDSIESNVISKAEAIEWVQKTEIVTVSRIVRSGQVLHVEGDL 124 Query: 119 LFLGDVNPGGSITCTGDIYILGALRGMAHAGVGGNQESIIAASLLSPTQLRIADVISRPP 178 L LGDVNPGG++ G+I+ILGALRG+AHAG GN+E+IIAAS++ P QLRI DV++R P Sbjct: 125 LLLGDVNPGGTVIAGGNIFILGALRGIAHAGYAGNKEAIIAASVMKPMQLRIGDVMNRAP 184 Query: 179 DEWGTRESSMEFAYLSS-GAMQIDKIHNIVKLRQGL 213 D + ME AY++ + +D++ ++ LR L Sbjct: 185 DYKTDERNEMECAYINEHNQIVVDRLQLLMHLRPNL 220 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,292,837,106 Number of extensions: 54054351 Number of successful extensions: 147983 Number of sequences better than 1.0e-05: 359 Number of HSP's gapped: 147779 Number of HSP's successfully gapped: 359 Length of query: 219 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 89 Effective length of database: 1,835,964,253 Effective search space: 163400818517 Effective search space used: 163400818517 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)