BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0021.p (264 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL29.1 B3KL29_9BACI Septum site-determining protein MinD 391 e-107 B1DDR1.1 B1DDR1_9BACL Septum site-determining protein MinD 351 4e-95 Q9K8H9.1 Q9K8H9_BACHD Septum site-determining protein 330 7e-89 C0ZAK6.1 C0ZAK6_BREBN Septum site-determining protein MinD 327 7e-88 Q5WER5.1 Q5WER5_BACSK Septum site-determining protein MinD 326 1e-87 >B3KL29.1 B3KL29_9BACI Septum site-determining protein MinD Length = 286 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 195/246 (79%), Positives = 210/246 (85%) Query: 1 MGEAIXXXXXXXXXXXXXXXANIGTALALQGKKVCLVDTDIGLRNLDVVMGLENRIIYDL 60 MGEAI ANIGTALAL GKKVCLVDTDIGLRNLDVVMGLENRIIYDL Sbjct: 1 MGEAIVVTSGKGGVGKTTTSANIGTALALLGKKVCLVDTDIGLRNLDVVMGLENRIIYDL 60 Query: 61 VDVAEGRCRLNQALVKDKRFDELYMLPAAQTKDKTSVTPEQVKDIILELKKEYEYILIDC 120 DVAEGRCRLNQAL+KDKRFDELYMLPAAQTKDK +V+PEQVKDI+LELKKE+EY++IDC Sbjct: 61 CDVAEGRCRLNQALIKDKRFDELYMLPAAQTKDKNAVSPEQVKDIVLELKKEFEYVIIDC 120 Query: 121 PAGIEHGFRNAIAGADKAIVVTTPEHAAVRDADRIIGLLEQSHVESPKLVVNRIRPGLIK 180 PAGIE GF+NAIAGADKAIVVTTPE+AAVRDADRIIGLLE SHVESPKLVVNRIRP ++K Sbjct: 121 PAGIEQGFKNAIAGADKAIVVTTPENAAVRDADRIIGLLESSHVESPKLVVNRIRPNMVK 180 Query: 181 TGDMLDIEDILQVLNIDLIGIVPDDELVIKAANNGEPTVMNPDSXXXXXXXXXXXXXLGD 240 +GDML+IED+LQVLNIDLIGIVPDDE+VIKAAN GEPTVMNPDS LGD Sbjct: 181 SGDMLEIEDVLQVLNIDLIGIVPDDEMVIKAANIGEPTVMNPDSQAAIAYRNIARRILGD 240 Query: 241 AVPLMQ 246 VPLMQ Sbjct: 241 TVPLMQ 246 >B1DDR1.1 B1DDR1_9BACL Septum site-determining protein MinD Length = 263 Score = 351 bits (900), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 173/248 (69%), Positives = 204/248 (82%), Gaps = 1/248 (0%) Query: 1 MGEAIXXXXXXXXXXXXXXXANIGTALALQGKKVCLVDTDIGLRNLDVVMGLENRIIYDL 60 MGEAI AN+GTALAL GKKVC+VDTDIGLRNLDVVMGLENRIIYDL Sbjct: 1 MGEAIVVTSGKGGVGKTTTSANLGTALALLGKKVCMVDTDIGLRNLDVVMGLENRIIYDL 60 Query: 61 VDVAEGRCRLNQALVKDKRFDELYMLPAAQTKDKTSVTPEQVKDIILELKKEYEYILIDC 120 +DVAEGRCRLNQAL+KDKRF+ELYMLPAAQTKDK V+PEQV+D++LELKK+++Y++IDC Sbjct: 61 IDVAEGRCRLNQALIKDKRFEELYMLPAAQTKDKQDVSPEQVRDMVLELKKDFDYVIIDC 120 Query: 121 PAGIEHGFRNAIAGADKAIVVTTPEHAAVRDADRIIGLLEQSHVESPKLVVNRIRPGLIK 180 PAGIEHGFRNAIAGAD+AIVVTTPE+AAVRDADR+IGLLE+ + S K+++NRIR ++K Sbjct: 121 PAGIEHGFRNAIAGADRAIVVTTPENAAVRDADRVIGLLEKEQIPS-KIIINRIRQNMVK 179 Query: 181 TGDMLDIEDILQVLNIDLIGIVPDDELVIKAANNGEPTVMNPDSXXXXXXXXXXXXXLGD 240 G+MLDI++I QVL +DL+GIVPDDE VIKAAN+GEPTVM+P S LGD Sbjct: 180 NGEMLDIDEICQVLAVDLLGIVPDDEKVIKAANSGEPTVMDPSSRAAIAYRNIARRILGD 239 Query: 241 AVPLMQLD 248 VPLM LD Sbjct: 240 MVPLMLLD 247 >Q9K8H9.1 Q9K8H9_BACHD Septum site-determining protein Length = 264 Score = 330 bits (846), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 163/248 (65%), Positives = 196/248 (79%) Query: 1 MGEAIXXXXXXXXXXXXXXXANIGTALALQGKKVCLVDTDIGLRNLDVVMGLENRIIYDL 60 MGEAI ANIGTALAL GKKVCLVDTDIGLRNLDVVMGLENRIIYDL Sbjct: 1 MGEAIVITSGKGGVGKTTTSANIGTALALSGKKVCLVDTDIGLRNLDVVMGLENRIIYDL 60 Query: 61 VDVAEGRCRLNQALVKDKRFDELYMLPAAQTKDKTSVTPEQVKDIILELKKEYEYILIDC 120 VDV EGRCRL QAL+KDKRF+ L +LPAAQTKDK++VTPEQ+K+I+ ELK+EY+Y+LIDC Sbjct: 61 VDVVEGRCRLKQALIKDKRFECLNLLPAAQTKDKSAVTPEQMKEIVEELKQEYDYVLIDC 120 Query: 121 PAGIEHGFRNAIAGADKAIVVTTPEHAAVRDADRIIGLLEQSHVESPKLVVNRIRPGLIK 180 PAGIE GF+NA+AGADKAIVVTTPE ++VRDADRIIGLLE+ VE+P+LVVNRIR ++K Sbjct: 121 PAGIEQGFKNAVAGADKAIVVTTPEISSVRDADRIIGLLEKEEVEAPRLVVNRIRGHMMK 180 Query: 181 TGDMLDIEDILQVLNIDLIGIVPDDELVIKAANNGEPTVMNPDSXXXXXXXXXXXXXLGD 240 G+MLD+++I+ +L I+L+GIV DDE VIK +N GEP ++PDS LG+ Sbjct: 181 NGEMLDVDEIVSILAIELLGIVVDDENVIKFSNKGEPIALHPDSKASVAYRNIARRILGE 240 Query: 241 AVPLMQLD 248 VPLM + Sbjct: 241 TVPLMSFE 248 >C0ZAK6.1 C0ZAK6_BREBN Septum site-determining protein MinD Length = 264 Score = 327 bits (838), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 159/228 (69%), Positives = 192/228 (84%) Query: 21 ANIGTALALQGKKVCLVDTDIGLRNLDVVMGLENRIIYDLVDVAEGRCRLNQALVKDKRF 80 AN+GTALAL G+KVC+VDTDIGLRNLDVVMGLENRIIYDLVDVAEG CRL QAL+KDKRF Sbjct: 21 ANLGTALALLGQKVCMVDTDIGLRNLDVVMGLENRIIYDLVDVAEGACRLPQALIKDKRF 80 Query: 81 DELYMLPAAQTKDKTSVTPEQVKDIILELKKEYEYILIDCPAGIEHGFRNAIAGADKAIV 140 + L +LPAAQTKDK++VTPEQ+++II +LK+EY+Y++IDCPAGIE GFRNA+AGAD+AIV Sbjct: 81 ENLALLPAAQTKDKSAVTPEQMEEIITQLKREYDYVIIDCPAGIEQGFRNAVAGADQAIV 140 Query: 141 VTTPEHAAVRDADRIIGLLEQSHVESPKLVVNRIRPGLIKTGDMLDIEDILQVLNIDLIG 200 VTTPE AAVRDADRIIGLLE+ + PKLV+NR+R ++K GDMLD+EDIL +L IDLIG Sbjct: 141 VTTPEKAAVRDADRIIGLLEREKIGMPKLVINRVRSHMVKNGDMLDVEDILDLLAIDLIG 200 Query: 201 IVPDDELVIKAANNGEPTVMNPDSXXXXXXXXXXXXXLGDAVPLMQLD 248 +VPDD+ +IK+AN GEP VMN +S LG+AVPL L+ Sbjct: 201 VVPDDDHIIKSANQGEPAVMNHESRGSIAYRNVARRLLGEAVPLQPLE 248 >Q5WER5.1 Q5WER5_BACSK Septum site-determining protein MinD Length = 264 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 160/248 (64%), Positives = 192/248 (77%) Query: 1 MGEAIXXXXXXXXXXXXXXXANIGTALALQGKKVCLVDTDIGLRNLDVVMGLENRIIYDL 60 MGEAI ANIGTALAL GKKVCL+D DIGLRNLDVVMGLENRIIYDL Sbjct: 1 MGEAIVVTSGKGGVGKTTTSANIGTALALSGKKVCLIDADIGLRNLDVVMGLENRIIYDL 60 Query: 61 VDVAEGRCRLNQALVKDKRFDELYMLPAAQTKDKTSVTPEQVKDIILELKKEYEYILIDC 120 VDV EGRC+L QAL+KDKRFD LY+LPAAQTKDKT V PEQ+K ++ ELK++Y+Y++IDC Sbjct: 61 VDVVEGRCKLKQALIKDKRFDHLYLLPAAQTKDKTDVLPEQLKSLVNELKEDYDYVIIDC 120 Query: 121 PAGIEHGFRNAIAGADKAIVVTTPEHAAVRDADRIIGLLEQSHVESPKLVVNRIRPGLIK 180 PAGIEHGFRNA+AGADKAIVVTTPE +AVRDADRIIGLLEQ ++E P+L+VNRIR L+K Sbjct: 121 PAGIEHGFRNAVAGADKAIVVTTPEVSAVRDADRIIGLLEQENIERPRLIVNRIRNHLVK 180 Query: 181 TGDMLDIEDILQVLNIDLIGIVPDDELVIKAANNGEPTVMNPDSXXXXXXXXXXXXXLGD 240 G+MLD+++I +L IDL+GIV DD+ VIK +N GEP ++ S LG+ Sbjct: 181 NGEMLDVDEITSILAIDLLGIVVDDDQVIKHSNKGEPIALHTSSKASIAYRNIGRRILGE 240 Query: 241 AVPLMQLD 248 VPLM ++ Sbjct: 241 TVPLMAIE 248 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.140 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,294,681,947 Number of extensions: 53219591 Number of successful extensions: 155164 Number of sequences better than 1.0e-05: 1327 Number of HSP's gapped: 154374 Number of HSP's successfully gapped: 1327 Length of query: 264 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 131 Effective length of database: 1,807,701,208 Effective search space: 236808858248 Effective search space used: 236808858248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)