BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0368.0017.p
         (103 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KL33.1 B3KL33_9BACI 50S ribosomal protein L21                       158   2e-37
B1DDQ6.1 B1DDQ6_9BACL 50S ribosomal protein L21                       146   7e-34
B4BAQ9.1 B4BAQ9_CLOTM 50S ribosomal protein L21                       139   1e-31
A3DBS2.1 RL21_CLOTH 50S ribosomal protein L21                         139   1e-31
B8I176.1 RL21_CLOCE 50S ribosomal protein L21                         133   5e-30

>B3KL33.1 B3KL33_9BACI 50S ribosomal protein L21
          Length = 103

 Score =  158 bits (399), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 86/103 (83%)

Query: 1   MYAIIETGGKQYKVQEGDVLFIEKLDAEDGASVTFDRVLAVSNDGGLTAGTPLVSGASVT 60
           MYAIIETGGKQYKVQEGDVLFIEKL A DG SVTFDRVLAVS + GL AGTP+VSGA+VT
Sbjct: 1   MYAIIETGGKQYKVQEGDVLFIEKLTAGDGESVTFDRVLAVSKEDGLVAGTPVVSGATVT 60

Query: 61  AKVEKHGKGQKVVVFXXXXXXXXXXXQGHRQPYTKVTIEKIQA 103
           AKVEKHGKG+KVVV+           QGHRQPYTKVTIEKIQA
Sbjct: 61  AKVEKHGKGRKVVVYKYKPKKNYHKKQGHRQPYTKVTIEKIQA 103


>B1DDQ6.1 B1DDQ6_9BACL 50S ribosomal protein L21
          Length = 103

 Score =  146 bits (368), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 83/103 (80%)

Query: 1   MYAIIETGGKQYKVQEGDVLFIEKLDAEDGASVTFDRVLAVSNDGGLTAGTPLVSGASVT 60
           M+AIIETGGKQYKVQEGDV++IEKL+  +G SVTFDRVLAVSN  GL  GTP+VSGA+V+
Sbjct: 1   MFAIIETGGKQYKVQEGDVIYIEKLNVTEGESVTFDRVLAVSNGEGLVTGTPVVSGATVS 60

Query: 61  AKVEKHGKGQKVVVFXXXXXXXXXXXQGHRQPYTKVTIEKIQA 103
            KVEK GKGQK++V+           QGHRQP+TKVTIEKIQA
Sbjct: 61  GKVEKQGKGQKIIVYKYKAKKNYRRKQGHRQPFTKVTIEKIQA 103


>B4BAQ9.1 B4BAQ9_CLOTM 50S ribosomal protein L21
          Length = 103

 Score =  139 bits (349), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/103 (66%), Positives = 80/103 (77%)

Query: 1   MYAIIETGGKQYKVQEGDVLFIEKLDAEDGASVTFDRVLAVSNDGGLTAGTPLVSGASVT 60
           MYA+IETGGKQYKVQEGDVLFIEKL  E+G++VTFD+V+AVS D  ++ GTP VS ASVT
Sbjct: 1   MYAVIETGGKQYKVQEGDVLFIEKLANEEGSTVTFDKVVAVSKDDKVSFGTPFVSNASVT 60

Query: 61  AKVEKHGKGQKVVVFXXXXXXXXXXXQGHRQPYTKVTIEKIQA 103
           AKV  HGKG+K++VF           QGHRQPYTK+ IEKI A
Sbjct: 61  AKVLCHGKGKKIIVFKYKPKKGYRRKQGHRQPYTKIQIEKINA 103


>A3DBS2.1 RL21_CLOTH 50S ribosomal protein L21
          Length = 103

 Score =  139 bits (349), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/103 (66%), Positives = 80/103 (77%)

Query: 1   MYAIIETGGKQYKVQEGDVLFIEKLDAEDGASVTFDRVLAVSNDGGLTAGTPLVSGASVT 60
           MYA+IETGGKQYKVQEGDVLFIEKL  E+G++VTFD+V+AVS D  ++ GTP VS ASVT
Sbjct: 1   MYAVIETGGKQYKVQEGDVLFIEKLANEEGSTVTFDKVVAVSKDDKVSFGTPFVSNASVT 60

Query: 61  AKVEKHGKGQKVVVFXXXXXXXXXXXQGHRQPYTKVTIEKIQA 103
           AKV  HGKG+K++VF           QGHRQPYTK+ IEKI A
Sbjct: 61  AKVLCHGKGKKIIVFKYKPKKGYRRKQGHRQPYTKIQIEKINA 103


>B8I176.1 RL21_CLOCE 50S ribosomal protein L21
          Length = 103

 Score =  133 bits (335), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 79/103 (76%)

Query: 1   MYAIIETGGKQYKVQEGDVLFIEKLDAEDGASVTFDRVLAVSNDGGLTAGTPLVSGASVT 60
           MYAII TGGKQYKVQEGDV+F+EKL AE+G+SVTFD+VLAVS +G L+ G P++  ASV+
Sbjct: 1   MYAIIMTGGKQYKVQEGDVVFLEKLAAEEGSSVTFDKVLAVSKEGNLSFGAPVLESASVS 60

Query: 61  AKVEKHGKGQKVVVFXXXXXXXXXXXQGHRQPYTKVTIEKIQA 103
            KV  HGKG+K++VF           +GHRQPYTKV IEKI A
Sbjct: 61  GKVLNHGKGEKIIVFKYKAKKNIRKKKGHRQPYTKVQIEKINA 103


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 535,804,517
Number of extensions: 17736507
Number of successful extensions: 40487
Number of sequences better than 1.0e-05: 1484
Number of HSP's gapped: 39769
Number of HSP's successfully gapped: 1484
Length of query: 103
Length of database: 3,060,696,203
Length adjustment: 71
Effective length of query: 32
Effective length of database: 2,391,804,138
Effective search space: 76537732416
Effective search space used: 76537732416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)