BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0368.0016.p
         (111 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KL34.1 B3KL34_9BACI Putative uncharacterized protein                135   2e-30
B1DDQ5.1 B1DDQ5_9BACL Putative uncharacterized protein                125   1e-27
B4BQ92.1 B4BQ92_9BACI Putative uncharacterized protein                 94   5e-18
A4IRD0.1 A4IRD0_GEOTN Hypothetical ribosome-associated protein         94   5e-18
B7GIQ9.1 B7GIQ9_ANOFW Predicted ribosomal protein                      93   9e-18

>B3KL34.1 B3KL34_9BACI Putative uncharacterized protein
          Length = 110

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 82/109 (75%), Gaps = 1/109 (0%)

Query: 1   MINVRITRASAQGAIVGFAVKGHAKYAEIGRDIVCAGVSAVTVGTVNSIESLTGVVLDTS 60
           MI V++ R    G I  F V GHA YA+ G DIVCAGVS++TVGTVNSIE+LTG V++T 
Sbjct: 1   MITVQVLRGE-DGRIHSFKVTGHAGYADPGEDIVCAGVSSITVGTVNSIEALTGTVMETR 59

Query: 61  MKDGFLSGTLVPVDDPEVSAKVQLLLESMVLMLGDIADSYGKYIKIQEV 109
           MK GFLS  L P  D  VS +VQLLLESMV+ML  IADSYGKYI+IQE+
Sbjct: 60  MKGGFLSANLPPTADDSVSGQVQLLLESMVVMLQGIADSYGKYIRIQEL 108


>B1DDQ5.1 B1DDQ5_9BACL Putative uncharacterized protein
          Length = 111

 Score =  125 bits (314), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 82/111 (73%)

Query: 1   MINVRITRASAQGAIVGFAVKGHAKYAEIGRDIVCAGVSAVTVGTVNSIESLTGVVLDTS 60
           MI+V + R +A   IV FA+ GHAKYA+ G+DI+CAGVSAV+VGTVN+IE+L  V L   
Sbjct: 1   MISVTVKRRAADRRIVSFAISGHAKYADRGKDIICAGVSAVSVGTVNAIEALATVELPAV 60

Query: 61  MKDGFLSGTLVPVDDPEVSAKVQLLLESMVLMLGDIADSYGKYIKIQEVII 111
           MK+G+LS  +    D E+  KVQLLLESMV+MLG IA +YGKY+ I E ++
Sbjct: 61  MKNGWLSSDIPEQPDKEIDDKVQLLLESMVVMLGTIAKTYGKYVVIHEQLL 111


>B4BQ92.1 B4BQ92_9BACI Putative uncharacterized protein
          Length = 110

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 72/111 (64%), Gaps = 3/111 (2%)

Query: 1   MINVRITRASAQGAIVGFAVKGHAKYAEIGRDIVCAGVSAVTVGTVNSIESLTGVVLDTS 60
           MI V I R  A G I  F + GHA++A+ G+DIVCAG SAV+ GT+N+IE+LTGV    S
Sbjct: 1   MIRVTIER-EADGRIRAFTMDGHAEFAKRGQDIVCAGASAVSFGTINAIEALTGVRPHVS 59

Query: 61  MKD--GFLSGTLVPVDDPEVSAKVQLLLESMVLMLGDIADSYGKYIKIQEV 109
           +    G+L   L  +++   + KVQLLLE+MV+ L  I   YGK+I++  +
Sbjct: 60  LGQDGGYLRCELPELEEAATAEKVQLLLEAMVVSLKTIERDYGKFIRVTSI 110


>A4IRD0.1 A4IRD0_GEOTN Hypothetical ribosome-associated protein
          Length = 110

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 72/111 (64%), Gaps = 3/111 (2%)

Query: 1   MINVRITRASAQGAIVGFAVKGHAKYAEIGRDIVCAGVSAVTVGTVNSIESLTGVVLDTS 60
           MI V I R  A G I  F + GHA++A+ G+DIVCAG SAV+ GT+N+IE+LTGV    S
Sbjct: 1   MIRVTIER-EADGRIRAFTMDGHAEFAKRGQDIVCAGASAVSFGTINAIEALTGVRPHVS 59

Query: 61  MKD--GFLSGTLVPVDDPEVSAKVQLLLESMVLMLGDIADSYGKYIKIQEV 109
           +    G+L   L  +++   + KVQLLLE+MV+ L  I   YGK+I++  +
Sbjct: 60  LGQDGGYLRCELPKLEEAATAEKVQLLLEAMVVSLKTIERDYGKFIRVTSI 110


>B7GIQ9.1 B7GIQ9_ANOFW Predicted ribosomal protein
          Length = 111

 Score = 92.8 bits (229), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 2/107 (1%)

Query: 1   MINVRITRASAQGAIVGFAVKGHAKYAEIGRDIVCAGVSAVTVGTVNSIESLTGV-VLDT 59
           MI + I R S +G I  F + GHA++A+ G+DIVCAGVSA++ G VN+I +LT V  +  
Sbjct: 1   MIRITINRTS-EGTIRSFTISGHAQFAKRGQDIVCAGVSAISFGAVNAIIALTNVKPIIQ 59

Query: 60  SMKDGFLSGTLVPVDDPEVSAKVQLLLESMVLMLGDIADSYGKYIKI 106
             KDG+L   L  ++D +V A VQLLLE M++ L  I   YGKY+ I
Sbjct: 60  QGKDGYLHCELPTIEDAKVLADVQLLLEGMIVSLQTIERDYGKYVNI 106


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.136    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 543,634,047
Number of extensions: 17563753
Number of successful extensions: 54047
Number of sequences better than 1.0e-05: 268
Number of HSP's gapped: 53939
Number of HSP's successfully gapped: 268
Length of query: 111
Length of database: 3,060,696,203
Length adjustment: 78
Effective length of query: 33
Effective length of database: 2,325,857,033
Effective search space: 76753282089
Effective search space used: 76753282089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)