BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0368.0015.p
         (73 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KL35.1 B3KL35_9BACI Ribosomal protein L27                           109   9e-23
B1DDQ4.1 B1DDQ4_9BACL Ribosomal protein L27                           100   6e-20
B0TBW5.1 RL27_HELMI 50S ribosomal protein L27                          98   3e-19
C0GEU9.1 C0GEU9_9FIRM Ribosomal protein L27                            95   2e-18
Q8RBA7.1 RL27_THETN 50S ribosomal protein L27                          93   6e-18

>B3KL35.1 B3KL35_9BACI Ribosomal protein L27
          Length = 103

 Score =  109 bits (272), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 54/56 (96%), Positives = 55/56 (98%)

Query: 1  VKRADGQAVTGGNILVRQRGTKIHPGTNVGIGKDDTLFALVDGVVKFERWGRDRKK 56
          VKRADGQAVTGG+ILVRQRGTKIHPGTNVGIGKDDTLFA VDGVVKFERWGRDRKK
Sbjct: 31 VKRADGQAVTGGSILVRQRGTKIHPGTNVGIGKDDTLFAKVDGVVKFERWGRDRKK 86


>B1DDQ4.1 B1DDQ4_9BACL Ribosomal protein L27
          Length = 103

 Score = 99.8 bits (247), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 48/55 (87%), Positives = 51/55 (92%)

Query: 2  KRADGQAVTGGNILVRQRGTKIHPGTNVGIGKDDTLFALVDGVVKFERWGRDRKK 56
          KRADGQ V+ G+IL RQRGTKIHPGTNVGIGKDDTLFALV+GVVKFER GRDRKK
Sbjct: 32 KRADGQVVSAGSILFRQRGTKIHPGTNVGIGKDDTLFALVEGVVKFERLGRDRKK 86


>B0TBW5.1 RL27_HELMI 50S ribosomal protein L27
          Length = 92

 Score = 97.8 bits (242), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query: 1  VKRADGQAVTGGNILVRQRGTKIHPGTNVGIGKDDTLFALVDGVVKFERWGRDRKK 56
          VKR+DGQAV  GNILVRQRGTKIHPG NVG+G DDTLFAL+DGVVKFER GRD+K+
Sbjct: 31 VKRSDGQAVLSGNILVRQRGTKIHPGNNVGLGSDDTLFALIDGVVKFERKGRDKKQ 86


>C0GEU9.1 C0GEU9_9FIRM Ribosomal protein L27
          Length = 95

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query: 1  VKRADGQAVTGGNILVRQRGTKIHPGTNVGIGKDDTLFALVDGVVKFERWGRDRKK 56
          VKRADGQ V+ G+ILVRQRGTKIHPG+NVG GKDDTLFALVDGVV FER GRD+K+
Sbjct: 30 VKRADGQEVSAGSILVRQRGTKIHPGSNVGRGKDDTLFALVDGVVSFERKGRDKKQ 85


>Q8RBA7.1 RL27_THETN 50S ribosomal protein L27
          Length = 95

 Score = 93.2 bits (230), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/56 (80%), Positives = 49/56 (87%)

Query: 1  VKRADGQAVTGGNILVRQRGTKIHPGTNVGIGKDDTLFALVDGVVKFERWGRDRKK 56
          VKR+DGQ V  GNILVRQRGTKIHPG NVGIGKDDTLFAL+DG V FER GRD+K+
Sbjct: 28 VKRSDGQFVLAGNILVRQRGTKIHPGANVGIGKDDTLFALIDGYVVFERKGRDKKQ 83


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 364,039,209
Number of extensions: 11234141
Number of successful extensions: 26208
Number of sequences better than 1.0e-05: 1560
Number of HSP's gapped: 26209
Number of HSP's successfully gapped: 1560
Length of query: 73
Length of database: 3,060,696,203
Length adjustment: 44
Effective length of query: 29
Effective length of database: 2,646,171,543
Effective search space: 76738974747
Effective search space used: 76738974747
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)