BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0368.0013.p
         (246 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KL36.1 B3KL36_9BACI Putative uncharacterized protein                189   1e-46
B1DDQ3.1 B1DDQ3_9BACL Putative uncharacterized protein                116   2e-24

>B3KL36.1 B3KL36_9BACI Putative uncharacterized protein
          Length = 246

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/244 (41%), Positives = 141/244 (57%)

Query: 1   MKSWKWLIWAVMLSVMLPLGXXXXXXXXXXXXXXXXXXXXXXXXXFFYNRRHFEEELRLQ 60
           MKSWKW+     L+ ++P+                           +  R+  E   +  
Sbjct: 1   MKSWKWIAAVAGLTSVIPVAWVVWKPSLAAGAVLTAWAVAASACGAWLVRKSDERRQQAI 60

Query: 61  EKTLQQAANRTLNHHRHDWMNDLQVLYGYIQLGKPDKSLECVGRIKERIALDSRIAKLGI 120
            + ++Q A + LNHHRHDWMN+LQ+LYGYIQLGK DK++  V RIK+R+A +SRI+KLGI
Sbjct: 61  IRNMEQTAIQMLNHHRHDWMNELQILYGYIQLGKLDKTVGSVERIKDRMATESRISKLGI 120

Query: 121 PSLVFYLQSFRTFRSSXXXXXXXXXXXXXXNKLSPDTGEELTQVIMQTVRAYQYSGLAPE 180
           PSLVFYL S+RT+ S+              +K+SP T E  T+ I+QTVRA+Q SG A  
Sbjct: 121 PSLVFYLHSYRTYSSNLQLCVEVVDQVQLEDKVSPQTAESFTEAIIQTVRAFQLSGTASW 180

Query: 181 GDTRKLLLGFAQDGGDILISFESEGDHGDPELLQGQIYNIVQGKIIKAEQSGRGKPNVEL 240
           GDTR+L L F Q   ++++    EG  GDPE L+ QI   V+G+ I+ EQ+  G+ +  L
Sbjct: 181 GDTRQLTLTFMQQEQELIVWALGEGSFGDPEGLKLQIEQSVKGEGIRVEQTEPGETSYRL 240

Query: 241 RLPL 244
            LP 
Sbjct: 241 YLPF 244


>B1DDQ3.1 B1DDQ3_9BACL Putative uncharacterized protein
          Length = 245

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 105/180 (58%), Gaps = 4/180 (2%)

Query: 46  FFYNRRHFEEELRLQEKT--LQQAANRTLNHHRHDWMNDLQVLYGYIQLGKPDKSLECVG 103
           F+      E+E RL      LQ A+ +TLNHHRHDWMNDLQVL+GYI++ K DK++E V 
Sbjct: 45  FWIRTERKEQEHRLARTVYMLQTASVKTLNHHRHDWMNDLQVLFGYIRMNKLDKTVEYVE 104

Query: 104 RIKERIALDSRIAKLGIPSLVFYLQSFRTFRSSXXXXXXXXXXXXXXNKLSPDTGEELTQ 163
           +I+ R+  +S+IAKLG+PSL+ Y+QSFRT  ++              N+L  D G+ + +
Sbjct: 105 KIRARMTEESQIAKLGVPSLISYIQSFRTL-TNAMQLQVKLDEGIYLNELD-DGGKTIAE 162

Query: 164 VIMQTVRAYQYSGLAPEGDTRKLLLGFAQDGGDILISFESEGDHGDPELLQGQIYNIVQG 223
            ++  + AY++S     GD   L +  +++   ++++   EGD    + L  +I   ++G
Sbjct: 163 TLISLINAYRFSVKTGYGDPAVLTVQLSREEEMLIVAIYYEGDLTSEQQLADKIKQQLEG 222


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,263,034,859
Number of extensions: 44579042
Number of successful extensions: 96986
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 96984
Number of HSP's successfully gapped: 2
Length of query: 246
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 114
Effective length of database: 1,817,122,223
Effective search space: 207151933422
Effective search space used: 207151933422
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)