BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0012.p (436 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL37.1 B3KL37_9BACI GTP-binding protein Obg/CgtA 687 0.0 B1DDQ2.1 B1DDQ2_9BACL GTP-binding protein Obg/CgtA 593 e-167 A9U7P9.1 A9U7P9_PHYPA Predicted protein (Fragment) 550 e-154 B7GIR2.1 B7GIR2_ANOFW Spo0B-associated GTPase Obg 522 e-146 Q65GM7.1 Q65GM7_BACLD Obg 518 e-145 >B3KL37.1 B3KL37_9BACI GTP-binding protein Obg/CgtA Length = 436 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/436 (76%), Positives = 368/436 (84%) Query: 1 MFVDKAKIYVKGGDGGDGLVAFRREKYVPEXXXXXXXXXXXXDVIFRVDEGLRTLMDFRY 60 MFVDKAK+YVKGGDGGDGL+AFRREKYVPE DVIFRVDEGLRTLMDFRY Sbjct: 1 MFVDKAKVYVKGGDGGDGLIAFRREKYVPEGGPAGGDGGKGGDVIFRVDEGLRTLMDFRY 60 Query: 61 QRHFKADRGVKGRNKSQHGANAEHMIVRIPPGTVLIDDDTKEVIADMTRHXXXXXXXXXX 120 Q+HFKA RG KGRNKSQHGANAE MIVRIPPGT+L DDDT EVI D+TRH Sbjct: 61 QKHFKAKRGEKGRNKSQHGANAESMIVRIPPGTILTDDDTGEVIGDLTRHGQQVVVARGG 120 Query: 121 XXXXXNIRFATAANPAPELAENGEEGQERYIVMELKVMADVGLVGFPSVGKSTLLSVVSA 180 NIRFAT NPAPELAENGEEG+ERY+ MELKVMADVGLVGFPSVGKSTLLSVVSA Sbjct: 121 RGGRGNIRFATPNNPAPELAENGEEGEERYVTMELKVMADVGLVGFPSVGKSTLLSVVSA 180 Query: 181 AQPKIGAYHFTTITPNLGVVDVGDGRSFVMADLPGLIEGASEGVGLGHEFLRHVERTRII 240 AQPKIGAYHFTTITPNLG+V+VGDGR+FVMADLPGLIEGA EGVGLGHEFLRHVERTR+I Sbjct: 181 AQPKIGAYHFTTITPNLGMVEVGDGRNFVMADLPGLIEGAHEGVGLGHEFLRHVERTRVI 240 Query: 241 IHVVDMSGSEGRDPFEDWVKINDELRQYNAGLMDRPQIVAANKMDMPESEANLAAFREQV 300 IHVVDM+G+EGRDPFEDW KINDE+R YN L++RPQIVAANKMDMPE+E LAAF+E+V Sbjct: 241 IHVVDMAGTEGRDPFEDWQKINDEIRLYNPVLIERPQIVAANKMDMPEAEEYLAAFKEKV 300 Query: 301 SELRPDLEIIPISSLTRQGVQELLYRATDLLDSIXXXXXXXXXXXTKERKVYKLEAEEDN 360 E+RPD+E++PISSLTRQG+QELLYR D+L+SI ERKVYK +A+ DN Sbjct: 301 KEIRPDIEVMPISSLTRQGIQELLYRTIDVLESIPDEPAIEEVSEVSERKVYKFKAQNDN 360 Query: 361 SFTITRDNDAFVVSSPRIERMLKRMQLSTHDAILKLARTLRHMGVDAELRKRGAVEGTIV 420 SFT+TRDN+ +VV S RIERMLKRMQ+++HDAILKLART+RHMG+D ELRKRGA EGTIV Sbjct: 361 SFTVTRDNEMYVVHSERIERMLKRMQMNSHDAILKLARTMRHMGIDEELRKRGATEGTIV 420 Query: 421 RIADFEFEFVENSSYY 436 RI DFEFEFVE SSYY Sbjct: 421 RIGDFEFEFVEGSSYY 436 >B1DDQ2.1 B1DDQ2_9BACL GTP-binding protein Obg/CgtA Length = 439 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 289/437 (66%), Positives = 345/437 (78%), Gaps = 2/437 (0%) Query: 1 MFVDKAKIYVKGGDGGDGLVAFRREKYVPEXXXXXXXXXXXXDVIFRVDEGLRTLMDFRY 60 MFVDKAKI+VKGG+GG+G+V++RREKYVPE DVIFRVDEGLRTLMDFRY Sbjct: 1 MFVDKAKIFVKGGNGGNGIVSYRREKYVPEGGPAGGDGGNGGDVIFRVDEGLRTLMDFRY 60 Query: 61 QRHFKADRGVKGRNKSQHGANAEHMIVRIPPGTVLIDDDTKEVIADMTRHXXXXXXXXXX 120 Q+HFK G +G+ KS HGA+A+ MI+RIPPGTV++DDDT+E+IADMTRH Sbjct: 61 QKHFKGPAGERGKVKSMHGASADDMIIRIPPGTVIVDDDTQEIIADMTRHGQEVVVARGG 120 Query: 121 XXXXXNIRFATAANPAPELAENGEEGQERYIVMELKVMADVGLVGFPSVGKSTLLSVVSA 180 NIRFAT NPAP++ ENGEEGQER++ +ELKVMADVGLVGFPSVGKSTLLSVVS Sbjct: 121 RGGRGNIRFATINNPAPDICENGEEGQERWVTLELKVMADVGLVGFPSVGKSTLLSVVSG 180 Query: 181 AQPKIGAYHFTTITPNLGVVDVGDGRSFVMADLPGLIEGASEGVGLGHEFLRHVERTRII 240 A+PKIGAYHFTTITPNLGVVDVGDGRSFVMADLPGLIEGA EGVGLGHEFLRHVERTR+I Sbjct: 181 AKPKIGAYHFTTITPNLGVVDVGDGRSFVMADLPGLIEGAHEGVGLGHEFLRHVERTRVI 240 Query: 241 IHVVDMSGSEGRDPFEDWVKINDELRQYNAGLMDRPQIVAANKMDMPESEANLAAFREQV 300 +HV+DM+G+EGRDPFEDWVKIN+EL +YN L +RPQI+AANKMDMPE+ NL F++Q+ Sbjct: 241 VHVLDMAGTEGRDPFEDWVKINEELVKYNEKLSERPQIIAANKMDMPEAADNLELFKQQL 300 Query: 301 SELRPDLE--IIPISSLTRQGVQELLYRATDLLDSIXXXXXXXXXXXTKERKVYKLEAEE 358 E+R D E I+PISSLT+QGVQELLY+A D LDS+ ERKV+ E E Sbjct: 301 DEVRGDREYLIVPISSLTKQGVQELLYKAADTLDSVPEEVSVEEVKDVAERKVFTFEKRE 360 Query: 359 DNSFTITRDNDAFVVSSPRIERMLKRMQLSTHDAILKLARTLRHMGVDAELRKRGAVEGT 418 D+SFTI R+++ FVV RIE LKRM ++++DAI++ A+ +R MGVDA LR+ GA +G Sbjct: 361 DDSFTIHREDEIFVVQGARIENYLKRMNMNSYDAIMRFAQMMRKMGVDAALRREGARDGD 420 Query: 419 IVRIADFEFEFVENSSY 435 V+IADF FEF E S Y Sbjct: 421 TVQIADFTFEFFEGSDY 437 >A9U7P9.1 A9U7P9_PHYPA Predicted protein (Fragment) Length = 333 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 270/333 (81%), Positives = 289/333 (86%) Query: 1 MFVDKAKIYVKGGDGGDGLVAFRREKYVPEXXXXXXXXXXXXDVIFRVDEGLRTLMDFRY 60 MFVDKAK+YVKGGDGGDGLVAFRREKYVPE DVIFRVDEGLRTLMDFRY Sbjct: 1 MFVDKAKVYVKGGDGGDGLVAFRREKYVPEGGPAGGDGGRGGDVIFRVDEGLRTLMDFRY 60 Query: 61 QRHFKADRGVKGRNKSQHGANAEHMIVRIPPGTVLIDDDTKEVIADMTRHXXXXXXXXXX 120 QRHFKA RG KGRNKSQHGA AE MIVRIPPGTVLIDDDT EVIAD+TRH Sbjct: 61 QRHFKAKRGEKGRNKSQHGAGAEDMIVRIPPGTVLIDDDTGEVIADLTRHGQQVVVAKGG 120 Query: 121 XXXXXNIRFATAANPAPELAENGEEGQERYIVMELKVMADVGLVGFPSVGKSTLLSVVSA 180 NIRFAT NPAPELAE+GEEGQERY+VMELKVMADVGLVGFPSVGKSTLLSVVS Sbjct: 121 RGGRGNIRFATPNNPAPELAEHGEEGQERYVVMELKVMADVGLVGFPSVGKSTLLSVVSG 180 Query: 181 AQPKIGAYHFTTITPNLGVVDVGDGRSFVMADLPGLIEGASEGVGLGHEFLRHVERTRII 240 A+PKIGAYHFTTITPNLGVV+V +GRSFVMADLPGLIEGA EGVGLGHEFLRHVERTR+I Sbjct: 181 ARPKIGAYHFTTITPNLGVVEVAEGRSFVMADLPGLIEGAHEGVGLGHEFLRHVERTRVI 240 Query: 241 IHVVDMSGSEGRDPFEDWVKINDELRQYNAGLMDRPQIVAANKMDMPESEANLAAFREQV 300 IHVVDM+GSEGRDP+EDWVKINDEL+QYNA L +RPQIVAANKMDMP++E NLA FRE+V Sbjct: 241 IHVVDMAGSEGRDPYEDWVKINDELKQYNANLAERPQIVAANKMDMPQAEDNLAEFREKV 300 Query: 301 SELRPDLEIIPISSLTRQGVQELLYRATDLLDS 333 ++ RP+LEI+PISSLTRQGVQELLYRA DLLD Sbjct: 301 AKDRPELEIMPISSLTRQGVQELLYRAADLLDQ 333 >B7GIR2.1 B7GIR2_ANOFW Spo0B-associated GTPase Obg Length = 428 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 260/432 (60%), Positives = 326/432 (75%), Gaps = 5/432 (1%) Query: 1 MFVDKAKIYVKGGDGGDGLVAFRREKYVPEXXXXXXXXXXXXDVIFRVDEGLRTLMDFRY 60 MFVD+ KIYVKGGDGG+G+VAFRREKYVP+ DV+F VDEGLRTLMDFRY Sbjct: 1 MFVDQVKIYVKGGDGGNGMVAFRREKYVPKGGPAGGDGGKGGDVVFVVDEGLRTLMDFRY 60 Query: 61 QRHFKADRGVKGRNKSQHGANAEHMIVRIPPGTVLIDDDTKEVIADMTRHXXXXXXXXXX 120 QRHFKA RG G +K+QHG NAE +IV++PPGTV+IDD+TKEVIAD+T H Sbjct: 61 QRHFKAPRGEHGMSKNQHGKNAEDLIVKVPPGTVVIDDETKEVIADLTEHGQRFVVAKGG 120 Query: 121 XXXXXNIRFATAANPAPELAENGEEGQERYIVMELKVMADVGLVGFPSVGKSTLLSVVSA 180 N RFATA+NPAPE+AENGE GQERY+ +ELK++ADVGLVGFPSVGKSTLLSVVSA Sbjct: 121 RGGRGNTRFATASNPAPEIAENGEPGQERYVTLELKLLADVGLVGFPSVGKSTLLSVVSA 180 Query: 181 AQPKIGAYHFTTITPNLGVVDVGDGRSFVMADLPGLIEGASEGVGLGHEFLRHVERTRII 240 A+PKI YHFTTI PNLGVV+ DGRSFVMADLPGLIEGA +GVGLGH+FLRH+ERTR+I Sbjct: 181 AKPKIADYHFTTIVPNLGVVETEDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVI 240 Query: 241 IHVVDMSGSEGRDPFEDWVKINDELRQYNAGLMDRPQIVAANKMDMPESEANLAAFREQV 300 +HV+DM+ EGRDP+ED+V IN+EL+QYN L +RPQI+ ANKMDMP +E +L F++++ Sbjct: 241 VHVIDMAAIEGRDPYEDYVVINEELKQYNLRLTERPQIIVANKMDMPNAEEHLQQFKQKL 300 Query: 301 SELRPDLEIIPISSLTRQGVQELLYRATDLLDSIXXXXXXXXXXXTKERKVYKLEAEEDN 360 +E D+ I PIS++TRQG++ELL+ DLL++ R VYKLE EE Sbjct: 301 NE---DVPIFPISAVTRQGIRELLFAIADLLETTPEFPLYPQEEEAIHRVVYKLEKEE-A 356 Query: 361 SFTITRDNDA-FVVSSPRIERMLKRMQLSTHDAILKLARTLRHMGVDAELRKRGAVEGTI 419 F ITRD+D F++S +IE++ K S +++ + AR LR +GVD LR RGA +G I Sbjct: 357 PFHITRDDDGTFILSGEKIEKLFKMTDFSREESVRRFARQLRSLGVDDALRARGAKDGDI 416 Query: 420 VRIADFEFEFVE 431 V++ ++EFEFV+ Sbjct: 417 VKLLNYEFEFVD 428 >Q65GM7.1 Q65GM7_BACLD Obg Length = 428 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 258/432 (59%), Positives = 324/432 (75%), Gaps = 5/432 (1%) Query: 1 MFVDKAKIYVKGGDGGDGLVAFRREKYVPEXXXXXXXXXXXXDVIFRVDEGLRTLMDFRY 60 MFVD+ KIYVKGGDGG+G+VAFRREKYVP+ DV+F+VDEGL TLMDFRY Sbjct: 1 MFVDQVKIYVKGGDGGNGMVAFRREKYVPKGGPAGGDGGKGGDVVFKVDEGLSTLMDFRY 60 Query: 61 QRHFKADRGVKGRNKSQHGANAEHMIVRIPPGTVLIDDDTKEVIADMTRHXXXXXXXXXX 120 QRHFKA RG G +K+QHG NAE M+V++PPGTV+IDDDTK+VIAD+T H Sbjct: 61 QRHFKAARGEHGMSKNQHGRNAEDMVVKVPPGTVVIDDDTKQVIADLTEHGQEAVIAKGG 120 Query: 121 XXXXXNIRFATAANPAPELAENGEEGQERYIVMELKVMADVGLVGFPSVGKSTLLSVVSA 180 N RFAT ANPAP+L+ENGE G+ERYIV+ELKV+ADVGLVGFPSVGKSTLLSVVS+ Sbjct: 121 RGGRGNTRFATPANPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSS 180 Query: 181 AQPKIGAYHFTTITPNLGVVDVGDGRSFVMADLPGLIEGASEGVGLGHEFLRHVERTRII 240 A+PKI YHFTT+ PNLG+V+ DGRSFVMADLPGLIEGA EGVGLGH+FLRH+ERTR+I Sbjct: 181 AKPKIADYHFTTLNPNLGMVETEDGRSFVMADLPGLIEGAHEGVGLGHQFLRHIERTRVI 240 Query: 241 IHVVDMSGSEGRDPFEDWVKINDELRQYNAGLMDRPQIVAANKMDMPESEANLAAFREQV 300 +HV+DMSG EGRDP+ED+V IN EL QYN L +RPQI+ ANKMDMP++E NL AF+E++ Sbjct: 241 VHVIDMSGLEGRDPYEDYVTINKELEQYNLRLTERPQIIVANKMDMPDAEENLKAFKEKL 300 Query: 301 SELRPDLEIIPISSLTRQGVQELLYRATDLLDSIXXXXXXXXXXXTKERKVYKLEAEEDN 360 ++ D + PIS++TRQG+++LL+ D L++ + R +YKLE EE Sbjct: 301 TD---DYPVFPISAVTRQGLRDLLFEIADRLETTPEFPLYDEEDMAENRVMYKLEDEE-A 356 Query: 361 SFTITRDNDA-FVVSSPRIERMLKRMQLSTHDAILKLARTLRHMGVDAELRKRGAVEGTI 419 F I+RD D FV+S ++ER+ K S +++ + AR LR MGVD LR RGA +G Sbjct: 357 PFEISRDPDGTFVLSGAKLERLFKMTDFSRDESVKRFARQLRGMGVDDALRARGAKDGDT 416 Query: 420 VRIADFEFEFVE 431 +R+ +FEFEF++ Sbjct: 417 IRLLEFEFEFID 428 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,298,742,345 Number of extensions: 88681700 Number of successful extensions: 279874 Number of sequences better than 1.0e-05: 3948 Number of HSP's gapped: 274624 Number of HSP's successfully gapped: 3986 Length of query: 436 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 297 Effective length of database: 1,751,175,118 Effective search space: 520099010046 Effective search space used: 520099010046 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)