BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0368.0010.p
         (223 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KL39.1 B3KL39_9BACI Putative uncharacterized protein                 67   9e-10

>B3KL39.1 B3KL39_9BACI Putative uncharacterized protein
          Length = 260

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 3/219 (1%)

Query: 1   VVMLGFADSVFRTV--VSMIALLIAETAVYAYSLFWLRTAGTAKRTPPVLLSGALIMAVY 58
           +++ G+   +F+    +S IA+  AE AV  +    +     A    P  ++  +I+ +Y
Sbjct: 31  ILLFGWIGGMFQPSSWISGIAVGCAEAAVLLFIGVVIGRGKAASSGTPFYIASGIIIGIY 90

Query: 59  TAVVFFSTIVLDWMLALQPYWYAGEQLIVLILSAIALGAVGLYGWNAGVQEQRTADASRS 118
           T  V    I+L ++  L    Y    LI      + LG V L    AG QE++ +D    
Sbjct: 91  TVSVVLEVILLGYLFKLPVSSYFMIHLITFSGFFVVLGLVFLAAKYAGAQERKESDHLAV 150

Query: 119 LRLHLMEITEIAATARTWSNPGAEELNQLLKDLEEQFKYSDPVSDPAMYETEAVISQQIS 178
            R  +  I EI              L + + +LEE  +YSDP+S  ++YE E +I Q+I+
Sbjct: 151 KRETVAWIGEIRRKLSELPGENMPSLERQIAELEETLRYSDPISHTSLYEEEQLIQQKIA 210

Query: 179 XXXXXXXXXXXXQ-DPPADWKKETETLTESIASTLQRRN 216
                       Q +   +  ++T  +   I  T+Q RN
Sbjct: 211 MLEDQVTLIGEAQAEQRKELAEQTVPIIRDILRTVQDRN 249


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,112,884,457
Number of extensions: 38059391
Number of successful extensions: 128194
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 128195
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 3,060,696,203
Length adjustment: 131
Effective length of query: 92
Effective length of database: 1,826,543,238
Effective search space: 168041977896
Effective search space used: 168041977896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)