BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0004.p (290 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL46.1 B3KL46_9BACI Prephenate dehydratase EC=4.2.1.51 418 e-115 B1DDP8.1 B1DDP8_9BACL Prephenate dehydratase EC=4.2.1.51 347 6e-94 C0ZAM5.1 C0ZAM5_BREBN Prephenate dehydratase EC=4.2.1.51 264 6e-69 B7GIR4.1 B7GIR4_ANOFW Prephenate dehydratase 234 5e-60 Q8EPQ1.1 Q8EPQ1_OCEIH Prephenate dehydratase EC=4.2.1.51 221 7e-56 >B3KL46.1 B3KL46_9BACI Prephenate dehydratase EC=4.2.1.51 Length = 295 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 200/290 (68%), Positives = 233/290 (80%) Query: 1 VLPQGSVSHEALLHLFGDEPVNIEHHKLISNVFLATANGATDYSVIPIENTIEGSVSLHI 60 +LP GSVSHEA+L+L EPV HHKLIS+VF++T G +DYSVIPIENTIEGSVSLH+ Sbjct: 6 LLPSGSVSHEAILYLLNGEPVEFVHHKLISDVFMSTVEGKSDYSVIPIENTIEGSVSLHM 65 Query: 61 DWLINEVNLPMQAEWIFPSIQNLISNPQEFVDAEGHKDYSKVVKILSHPVAMAQCLQFIR 120 DWL+NEV+LPMQ EW++PSIQNLI N EF ++G DYS++ KI SH VA AQC QF+ Sbjct: 66 DWLVNEVDLPMQVEWVYPSIQNLIGNAAEFRSSDGTMDYSQIKKIWSHQVATAQCRQFLA 125 Query: 121 DHAPWAELESVGSTSEAVEIVSNNPGKGWAAIGTALGAATHGLEVVERQVTDHNNNYTRF 180 AP AELE VGSTSE V+IV NPG+GWAAIGT+LGAATH L V+ ++TDH+NNYTRF Sbjct: 126 KAAPQAELEQVGSTSEGVKIVKENPGRGWAAIGTSLGAATHELNVLAERITDHDNNYTRF 185 Query: 181 VLVGHQKLELPRKSSGDKTSILVTLPEDFPGALHQVLAAFAWRRLNLSRIESRPTKKKLG 240 VL+G + + + R KTSILVTLPED PGALHQVL+AFAWRRLNLSRIESRPTKKKLG Sbjct: 186 VLIGREPILVNRSPEHIKTSILVTLPEDVPGALHQVLSAFAWRRLNLSRIESRPTKKKLG 245 Query: 241 TYYFYIDVMEPIESVLLPAAIEEINALGCQVRILGSYPTYTYEEEKAEVQ 290 YYFYIDVM +SVLL AA+ EI ALGC VR+LGSYP Y YE EK EV+ Sbjct: 246 NYYFYIDVMAAADSVLLVAAMGEIEALGCLVRVLGSYPGYAYESEKMEVK 295 >B1DDP8.1 B1DDP8_9BACL Prephenate dehydratase EC=4.2.1.51 Length = 293 Score = 347 bits (891), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 159/256 (62%), Positives = 206/256 (80%), Gaps = 1/256 (0%) Query: 1 VLPQGSVSHEALLHLFGDEPVNIEHHKLISNVFLATANGATDYSVIPIENTIEGSVSLHI 60 VLP GSVS EA+ LF E +N +HH+LI++VF++T NG +DYSV+PIENTIEGSV+LH+ Sbjct: 6 VLPAGSVSDEAVKRLFAGESMNWKHHRLIADVFMSTVNGVSDYSVVPIENTIEGSVNLHV 65 Query: 61 DWLINEVNLPMQAEWIFPSIQNLISNPQEFVDAEGHKDYSKVVKILSHPVAMAQCLQFIR 120 DWL++EV+LP+QAEW++PSIQNLI E G D+S++ K++SHPVA+AQCLQF+R Sbjct: 66 DWLVHEVDLPIQAEWVYPSIQNLIGRSSEAAGEGGTVDFSQIRKVISHPVAIAQCLQFLR 125 Query: 121 DHAPWAELESVGSTSEAVEIVSNNPGKGWAAIGTALGAATHGLEVVERQVTDHNNNYTRF 180 P AE+E+ GSTSE V+IV NPG+GWAAIGT A +GL+V+ R +TDH+NN+TRF Sbjct: 126 SELPHAEIETAGSTSEGVKIVKENPGQGWAAIGTMTAAGNNGLDVLSRGITDHDNNFTRF 185 Query: 181 VLVGHQKLELPRKSSGDKTSILVTLPEDFPGALHQVLAAFAWRRLNLSRIESRPTKKKLG 240 +LVG + R+S KTSIL+TLPED+PGALHQVLAAFAWR++NLS+IESRPTKKKLG Sbjct: 186 LLVGSKPFT-ARQSDKQKTSILITLPEDYPGALHQVLAAFAWRKINLSKIESRPTKKKLG 244 Query: 241 TYYFYIDVMEPIESVL 256 YYFYID+ +++VL Sbjct: 245 NYYFYIDIDMALDTVL 260 >C0ZAM5.1 C0ZAM5_BREBN Prephenate dehydratase EC=4.2.1.51 Length = 287 Score = 264 bits (675), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 136/281 (48%), Positives = 188/281 (66%), Gaps = 6/281 (2%) Query: 3 PQGSVSHEALLHLFGDEPVNIEHHKLISNVFLATANGATDYSVIPIENTIEGSVSLHIDW 62 P+G+ + EA L + ++ + I V + Y V+P+EN+IEG+V+ +DW Sbjct: 10 PRGTFTEEAARILSLGQNLSFVPYPGIIEVLDGVSKEEVAYGVVPMENSIEGTVNSTLDW 69 Query: 63 LINEVNLPMQAEWIFPSIQNLISNPQEFVDAEGHKDYSKVVKILSHPVAMAQCLQFIRDH 122 LI+EV LP+ AE P QNL+ E S + ++LSHP A+AQ F+R++ Sbjct: 70 LIHEVELPILAELALPITQNLL-----VAKREHPLPLSAITRVLSHPQAIAQSHNFLREN 124 Query: 123 APWAELESVGSTSEAVEIVSNNPGKGWAAIGTALGAATHGLEVVERQVTDHNNNYTRFVL 182 P A +E+V ST+ A ++VS +P + WAA+GT L + LE Q+ D++NNYTRFVL Sbjct: 125 LPEAAIETVNSTALAAKMVSEHPEEPWAAVGTRLNVEIYPLEFAREQIQDYSNNYTRFVL 184 Query: 183 VGHQKLELPRKSSGDKTSILVTLPEDFPGALHQVLAAFAWRRLNLSRIESRPTKKKLGTY 242 VG + L+LP S +KT+ILVTLPEDFPGAL+QVLAAFAWR++NLSRIESRPTKK LG+Y Sbjct: 185 VGRESLDLP-VSRKEKTTILVTLPEDFPGALYQVLAAFAWRKVNLSRIESRPTKKALGSY 243 Query: 243 YFYIDVMEPIESVLLPAAIEEINALGCQVRILGSYPTYTYE 283 YF ID+ + ++ VLLP A EI A+GCQVR LG+YP Y ++ Sbjct: 244 YFVIDIEQKMDDVLLPGAFAEIEAIGCQVRQLGTYPFYMHQ 284 >B7GIR4.1 B7GIR4_ANOFW Prephenate dehydratase Length = 287 Score = 234 bits (598), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 122/284 (42%), Positives = 183/284 (64%), Gaps = 10/284 (3%) Query: 3 PQGSVSHEALLHLFGDEPVNIEHHKLISNVFLATANGATDYSVIPIENTIEGSVSLHIDW 62 P+G+ +H A+ +F P N+ +H I A +G + +V+P+EN +EGSV+L ID+ Sbjct: 8 PKGTFTHAAVEAVFPHIP-NVPYHT-IPQCMDAVRDGEVELAVVPLENALEGSVNLTIDY 65 Query: 63 LINEVNLPMQAEWIFPSIQNLISNPQEFVDAEGHKDYSKVVKILSHPVAMAQCLQFIRDH 122 LI+E NLP+ E I P Q+L+ +P + D+ + +I SH A+AQC +F+ H Sbjct: 66 LIHECNLPIVGEIIAPIEQHLLVHPSQL------DDWKHIKRIYSHSHAIAQCHKFLHRH 119 Query: 123 APWAELESVGSTSEAVEIVSNNPGKGWAAIGTALGAATHGLEVVERQVTDHNNNYTRFVL 182 A E V STS A + VS +P + AAIG L A +GL + + + D++ N+TRF++ Sbjct: 120 LKHATYEYVTSTSAAAKYVSEHPKENIAAIGNRLAAKQYGLAIAKENIHDYDYNHTRFIV 179 Query: 183 VGHQKLELPRKSSGD--KTSILVTLPEDFPGALHQVLAAFAWRRLNLSRIESRPTKKKLG 240 + ++ LP K D KT+++V LP+D GALHQVL+AFAWR+LNL++IESRP K LG Sbjct: 180 LHRERCLLPVKHQEDGFKTTLMVMLPKDQAGALHQVLSAFAWRKLNLTKIESRPAKTGLG 239 Query: 241 TYYFYIDVMEPIESVLLPAAIEEINALGCQVRILGSYPTYTYEE 284 Y+F ID+ + ++ VL+P AI E+ ALGC V++LGSYP YT ++ Sbjct: 240 NYFFIIDIDQKMDDVLIPGAIAELEALGCTVQLLGSYPYYTVKK 283 >Q8EPQ1.1 Q8EPQ1_OCEIH Prephenate dehydratase EC=4.2.1.51 Length = 284 Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 122/280 (43%), Positives = 172/280 (61%), Gaps = 11/280 (3%) Query: 3 PQGSVSHEALLHLFGDEPVNIEHHKLISNVFLATANGATDYSVIPIENTIEGSVSLHIDW 62 P+G+ + A+ +F E N ++ I A G D V+PIEN IEG+V L ID+ Sbjct: 9 PKGTFTKMAVDSVFNGEMKN--GYRTIPECIDAVDKGEVDIGVVPIENAIEGTVQLTIDY 66 Query: 63 LINEVNLPMQAEWIFPSIQNLISNPQEFVDAEGHKDYSKVVKILSHPVAMAQCLQFIRDH 122 LI++V LP+ E + P Q+L+ V E + S + ++ SH A+AQC Q++ H Sbjct: 67 LIHQVRLPVVGEIVVPIQQHLL------VRKEVTNNLSDIQEVYSHSHAIAQCHQYLHRH 120 Query: 123 APWAELESVGSTSEAVEIVSNNPGKGWAAIGTALGAATHGLEVVERQVTDHNNNYTRF-V 181 A + ST +A EIVSN+ + AAIG L A +GL + + + D+ NN+TRF V Sbjct: 121 LHAATTKHTSSTGKAAEIVSNS-NEPIAAIGNRLAAEEYGLHIFQENIHDYPNNHTRFLV 179 Query: 182 LVGH-QKLELPRKSSGDKTSILVTLPEDFPGALHQVLAAFAWRRLNLSRIESRPTKKKLG 240 L H +K+ + K +KT++L+TLP D GALHQ+L+AF+WR+LNLS+IESRPTK LG Sbjct: 180 LSNHPEKVHIKHKKDSEKTTMLITLPNDQSGALHQILSAFSWRKLNLSKIESRPTKTGLG 239 Query: 241 TYYFYIDVMEPIESVLLPAAIEEINALGCQVRILGSYPTY 280 Y+F IDV +P + VL P E+ ALGCQV ILG+YP Y Sbjct: 240 NYFFIIDVDQPYDDVLFPGVKSELEALGCQVTILGTYPVY 279 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,763,747,957 Number of extensions: 70116617 Number of successful extensions: 195650 Number of sequences better than 1.0e-05: 1462 Number of HSP's gapped: 191982 Number of HSP's successfully gapped: 1464 Length of query: 290 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 156 Effective length of database: 1,798,280,193 Effective search space: 280531710108 Effective search space used: 280531710108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)