BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0002.p (256 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL48.1 B3KL48_9BACI Peptidoglycan-binding LysM 163 1e-38 B1DDP7.1 B1DDP7_9BACL Peptidoglycan-binding LysM 126 2e-27 Q5KX83.1 Q5KX83_GEOKA Spore peptidoglycan hydrolase (N-acetylglu... 85 8e-15 C3J0S3.1 C3J0S3_9BACI Peptidoglycan-binding LysM 84 9e-15 B7YCE0.1 B7YCE0_9BACI Peptidoglycan-binding LysM 84 9e-15 >B3KL48.1 B3KL48_9BACI Peptidoglycan-binding LysM Length = 580 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/176 (53%), Positives = 119/176 (67%), Gaps = 12/176 (6%) Query: 1 MVKSGDTLYALSQKYGVPLQKIIEANPQISNPDVLAVGDKVKIPTATVPVPENNE-VYYK 59 +VK GDTLY LS+KY VPL KII+ANPQ+ +P+ L VG K+K+PT V VP+ ++ + +K Sbjct: 5 IVKEGDTLYELSKKYDVPLAKIIDANPQLVDPNKLDVGAKIKVPTEPVQVPDGSQPIIHK 64 Query: 60 HTVKQGDTLWKLSKAWGIKLKDMIDANTHLKNPNALLVGETVNIPKKGDPV------AVE 113 HTVKQGD+LWKLSKAWG+ LK++I+AN LKNPNALLVGE VNIP G + V Sbjct: 65 HTVKQGDSLWKLSKAWGVTLKEIINANPQLKNPNALLVGEVVNIPSSGGSMESGVDDGVS 124 Query: 114 PQSAANAIIDKTKLGAKDYTGVKEQ--PPAEVSPVTTNLPAPAP---NKEPEVAPI 164 S + A K K G+KDYTGVKE+ P E PV + P P K PE++P Sbjct: 125 MSSGSGAAAGKKKPGSKDYTGVKEEITAPIEQPPVVPEVKEPEPPILPKLPEISPF 180 >B1DDP7.1 B1DDP7_9BACL Peptidoglycan-binding LysM Length = 747 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/122 (53%), Positives = 82/122 (67%), Gaps = 16/122 (13%) Query: 1 MVKSGDTLYALSQKYGVPLQKIIEANPQISNPDVLAVGDKVKIPTATVPVPENNEV---- 56 +VK GDTLY ++QK+ V ++ I++ NP I+NPD+L VG K+K+P+A NEV Sbjct: 5 VVKKGDTLYFIAQKHNVSIEDILKLNPSITNPDMLDVGMKLKVPSA-------NEVGGGT 57 Query: 57 -----YYKHTVKQGDTLWKLSKAWGIKLKDMIDANTHLKNPNALLVGETVNIPKKGDPVA 111 ++H VKQGDTLWKLSKAWG+ L DMI AN LKNPN LL GE VNIPK P Sbjct: 58 GGLDIMHQHVVKQGDTLWKLSKAWGVPLADMIKANPQLKNPNVLLTGEIVNIPKTATPTE 117 Query: 112 VE 113 V+ Sbjct: 118 VQ 119 >Q5KX83.1 Q5KX83_GEOKA Spore peptidoglycan hydrolase (N-acetylglucosaminidase) Length = 470 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 72/106 (67%), Gaps = 12/106 (11%) Query: 1 MVKSGDTLYALSQKYGVPLQKIIEANPQISNPDVLAVGDKVKIPTATVPVPENNEVYYKH 60 +VK G+TL+ L+Q+YGVPL++I+ AN ++S+P+ LAVG + +PVP Y H Sbjct: 5 VVKRGETLWQLAQRYGVPLERIVAAN-ELSDPNRLAVGQAL-----VIPVP-----YRYH 53 Query: 61 TVKQGDTLWKLSKAWGIKLKDMIDANTHLKNPNALLVGETVNIPKK 106 TV+ G+TLW++++ +G+ ++ +I AN + NP+ L G T+ IP + Sbjct: 54 TVRTGETLWQIARQYGVAVEAIIQAN-RITNPSLLYPGTTLFIPAR 98 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 63/103 (61%), Gaps = 14/103 (13%) Query: 2 VKSGDTLYALSQKYGVPLQKIIEANPQISNPDVLAVGDKVKIPTATVPVPENNEVYYKHT 61 V++G+TL+ ++++YGV ++ II+AN +I+NP +L G + IP HT Sbjct: 55 VRTGETLWQIARQYGVAVEAIIQAN-RITNPSLLYPGTTLFIPARI------------HT 101 Query: 62 VKQGDTLWKLSKAWGIKLKDMIDANTHLKNPNALLVGETVNIP 104 V+ G+TL +++ +G+ ++ +I+ N + +PN + G+ + IP Sbjct: 102 VRSGETLAQIASFYGVTVQQLIEVND-ITDPNRIAPGQRLIIP 143 >C3J0S3.1 C3J0S3_9BACI Peptidoglycan-binding LysM Length = 504 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 72/106 (67%), Gaps = 12/106 (11%) Query: 1 MVKSGDTLYALSQKYGVPLQKIIEANPQISNPDVLAVGDKVKIPTATVPVPENNEVYYKH 60 +VK G+TL+ L+Q+YGVPL++I+ AN ++S+P+ LAVG + +PVP Y H Sbjct: 39 VVKRGETLWQLAQRYGVPLERIVAAN-ELSDPNRLAVGQAL-----VIPVP-----YRYH 87 Query: 61 TVKQGDTLWKLSKAWGIKLKDMIDANTHLKNPNALLVGETVNIPKK 106 TV+ G+TLW++++ +G+ ++ +I AN + NP+ L G T+ IP + Sbjct: 88 TVRTGETLWQIARQYGVAVEAIIQAN-RITNPSLLYPGTTLFIPAR 132 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 64/103 (62%), Gaps = 14/103 (13%) Query: 2 VKSGDTLYALSQKYGVPLQKIIEANPQISNPDVLAVGDKVKIPTATVPVPENNEVYYKHT 61 V++G+TL+ ++++YGV ++ II+AN +I+NP +L G + IP HT Sbjct: 89 VRTGETLWQIARQYGVAVEAIIQAN-RITNPSLLYPGTTLFIPARI------------HT 135 Query: 62 VKQGDTLWKLSKAWGIKLKDMIDANTHLKNPNALLVGETVNIP 104 V+ G+TL +++ +G+ ++ +I+ N + +PN ++ G+ + IP Sbjct: 136 VRSGETLAQIASFYGVTVQQLIEVND-ITDPNRIVPGQRLIIP 177 >B7YCE0.1 B7YCE0_9BACI Peptidoglycan-binding LysM Length = 504 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 72/106 (67%), Gaps = 12/106 (11%) Query: 1 MVKSGDTLYALSQKYGVPLQKIIEANPQISNPDVLAVGDKVKIPTATVPVPENNEVYYKH 60 +VK G+TL+ L+Q+YGVPL++I+ AN ++S+P+ LAVG + +PVP Y H Sbjct: 39 VVKRGETLWQLAQRYGVPLERIVAAN-ELSDPNRLAVGQAL-----VIPVP-----YRYH 87 Query: 61 TVKQGDTLWKLSKAWGIKLKDMIDANTHLKNPNALLVGETVNIPKK 106 TV+ G+TLW++++ +G+ ++ +I AN + NP+ L G T+ IP + Sbjct: 88 TVRTGETLWQIARQYGVAVEAIIQAN-RITNPSLLYPGTTLFIPAR 132 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 64/103 (62%), Gaps = 14/103 (13%) Query: 2 VKSGDTLYALSQKYGVPLQKIIEANPQISNPDVLAVGDKVKIPTATVPVPENNEVYYKHT 61 V++G+TL+ ++++YGV ++ II+AN +I+NP +L G + IP HT Sbjct: 89 VRTGETLWQIARQYGVAVEAIIQAN-RITNPSLLYPGTTLFIPARI------------HT 135 Query: 62 VKQGDTLWKLSKAWGIKLKDMIDANTHLKNPNALLVGETVNIP 104 V+ G+TL +++ +G+ ++ +I+ N + +PN ++ G+ + IP Sbjct: 136 VRSGETLAQIASFYGVTVQQLIEVND-ITDPNRIVPGQRLIIP 177 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.308 0.128 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,256,092,068 Number of extensions: 67026148 Number of successful extensions: 152938 Number of sequences better than 1.0e-05: 225 Number of HSP's gapped: 153530 Number of HSP's successfully gapped: 281 Length of query: 256 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 123 Effective length of database: 1,807,701,208 Effective search space: 222347248584 Effective search space used: 222347248584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 130 (54.7 bits)