BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0359.0023.p
         (177 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2GY94.1 C2GY94_BIFLO Endo-beta-N-acetylglucosaminidase family p...    89   2e-16

>C2GY94.1 C2GY94_BIFLO Endo-beta-N-acetylglucosaminidase family protein
          Length = 1096

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 96/184 (52%), Gaps = 16/184 (8%)

Query: 6   DGKFDVSWSNTGSTAGGVTVRVQSVN--WITTAEPVQQQMVVPAGSTSAEFTGMPVNGDD 63
           DG   VSW+N    +G  TV V+S N  W   A+P  Q + V A  + A     PV+G  
Sbjct: 727 DGNVKVSWTNP-QVSGEKTVTVKSDNGSWRYAAQPYSQTVKVSADKSEATIPNAPVDGSR 785

Query: 64  YIVTVTAGPADPVSVSGHFIDTIAEPY-AEAWSWNQDILNLPMPNTRDWRYLYVYE---- 118
           Y+VTV        + +G F D   EPY A + +WN D + L  P T+DWRYLY+ E    
Sbjct: 786 YVVTVDNAGGTTATATGVFADATIEPYPACSVTWNGDRVTLVRPETQDWRYLYMTEKWTD 845

Query: 119 ---DGVAKSFAT--TYSSGNKPM--IVRGRTTKASLSFR-STANVVYVVMEDYAGNRSEP 170
              +   K      TYS    P+  I+RGRTT +S +    + + ++V +EDY GN++EP
Sbjct: 846 ENGEKQEKQLGANYTYSQSTPPITGIIRGRTTPSSYTKSIPSGHELWVQVEDYNGNKTEP 905

Query: 171 VYLK 174
           V ++
Sbjct: 906 VKIQ 909


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.128    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,129,687,372
Number of extensions: 45681795
Number of successful extensions: 80433
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 80431
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 50
Effective length of database: 1,864,227,298
Effective search space: 93211364900
Effective search space used: 93211364900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)