BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0359.0022.p (315 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D9A0.1 B1D9A0_9BACL Helix-turn-helix type 11 domain protein 461 e-128 B3K8F0.1 B3K8F0_9BACI Helix-turn-helix type 11 domain protein 413 e-113 C0ZKB1.1 C0ZKB1_BREBN Putative transcriptional regulator 329 2e-88 C3B093.1 C3B093_BACMY Putative uncharacterized protein 266 2e-69 C3AII6.1 C3AII6_BACMY Putative uncharacterized protein 266 2e-69 >B1D9A0.1 B1D9A0_9BACL Helix-turn-helix type 11 domain protein Length = 315 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 225/315 (71%), Positives = 258/315 (81%) Query: 1 MNKTERQLAITLELQRSKMHRAEDLAAQFETSVRTIYRDIQALSEAGVPIIGAPGQGYSL 60 MNKT+RQLAI LELQRSK+ RAEDLA+ +ETSVRTIYRDIQALSE GVPI GAPG GYSL Sbjct: 1 MNKTDRQLAIMLELQRSKVIRAEDLASLYETSVRTIYRDIQALSEMGVPIFGAPGHGYSL 60 Query: 61 MEGYFLPPVGFTAEEAVALLMGTDFIEQRLDAEYGSVSKSARRKIEAVLPEPVRAESARV 120 MEGYFLPP+GF+AEEAVALLMG DFIEQRLD +Y V+K+A+ KIEA+LPE VR ES RV Sbjct: 61 MEGYFLPPIGFSAEEAVALLMGADFIEQRLDGDYARVAKAAKSKIEAILPETVREESTRV 120 Query: 121 RDTMRLLHAGEPVTGRKEKDYLGQIRRAILERHRLSFTYLKKMPEADGSRKSSREADPYG 180 R+TMRLL+AGEP TG +EKD LGQ+RRAILER ++SF+Y KK PEADG+R S+RE PYG Sbjct: 121 RETMRLLNAGEPRTGLREKDILGQVRRAILERRKISFSYKKKTPEADGNRNSTREVAPYG 180 Query: 181 LALVQGNWTLVARCGLRQDIRHFRLSRMTELAVLEERFSIPAGFNLSRYRPPDDXXXXXX 240 LA QGNW L+ CGLRQDIRHFRLSRMTELAVL+ F++P GFNL+RYRP DD Sbjct: 181 LAFAQGNWMLIGHCGLRQDIRHFRLSRMTELAVLDTPFAMPHGFNLNRYRPQDDRKEHIW 240 Query: 241 XXXXXXIADKMIETVNYYLETTEEREDGLLVTFRIRQLEELLPYILSWGGEAEVLEPVSL 300 IADK+ ET N+Y+E+ EER DGL V FR+R EE+LP ILSWGG+ EV+EP SL Sbjct: 241 IRANPEIADKIAETGNFYIESAEERTDGLWVHFRVRAPEEILPLILSWGGDVEVMEPESL 300 Query: 301 RRRVREEAEKMFKRY 315 R RVREEAEKM KRY Sbjct: 301 RCRVREEAEKMLKRY 315 >B3K8F0.1 B3K8F0_9BACI Helix-turn-helix type 11 domain protein Length = 315 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 201/315 (63%), Positives = 248/315 (78%) Query: 1 MNKTERQLAITLELQRSKMHRAEDLAAQFETSVRTIYRDIQALSEAGVPIIGAPGQGYSL 60 MNKT+R LAI LELQ+ K+ RAEDLA+ FETSVRTIYRDIQALSEAGVP+IGAPGQGYSL Sbjct: 1 MNKTDRLLAILLELQQRKVMRAEDLASLFETSVRTIYRDIQALSEAGVPVIGAPGQGYSL 60 Query: 61 MEGYFLPPVGFTAEEAVALLMGTDFIEQRLDAEYGSVSKSARRKIEAVLPEPVRAESARV 120 MEGYFLPP+ FTAEEAVALL+GTDF+EQR DA+YG ++++R+KIE++LP+ VRA++ARV Sbjct: 61 MEGYFLPPIMFTAEEAVALLIGTDFVEQRFDADYGEKARASRKKIESILPDRVRADAARV 120 Query: 121 RDTMRLLHAGEPVTGRKEKDYLGQIRRAILERHRLSFTYLKKMPEADGSRKSSREADPYG 180 R TMRLL G +E+DYL +RRAILE +L F Y+K MP++ G+RKS R A PYG Sbjct: 121 RKTMRLLAPGSKAALGEERDYLELVRRAILEERKLEFHYVKNMPDSKGNRKSFRSAAPYG 180 Query: 181 LALVQGNWTLVARCGLRQDIRHFRLSRMTELAVLEERFSIPAGFNLSRYRPPDDXXXXXX 240 LA +QG+WTL+A C LRQ IRHFRLSRM +L +LEERF +P F+L YRPPDD Sbjct: 181 LAFLQGSWTLIAWCDLRQGIRHFRLSRMKDLTILEERFEMPPDFHLENYRPPDDRNLLVR 240 Query: 241 XXXXXXIADKMIETVNYYLETTEEREDGLLVTFRIRQLEELLPYILSWGGEAEVLEPVSL 300 IAD++ E NYY+ET EE E+GLLV+FR+R+ EE+L ++L WG + VLEP S Sbjct: 241 ILAIHGIADRVKEAGNYYIETLEECEEGLLVSFRVRRPEEILHWVLGWGSDVVVLEPQSF 300 Query: 301 RRRVREEAEKMFKRY 315 R R+R+EAEKMFKRY Sbjct: 301 RDRIRDEAEKMFKRY 315 >C0ZKB1.1 C0ZKB1_BREBN Putative transcriptional regulator Length = 315 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 164/315 (52%), Positives = 217/315 (68%) Query: 1 MNKTERQLAITLELQRSKMHRAEDLAAQFETSVRTIYRDIQALSEAGVPIIGAPGQGYSL 60 MNKT+R LAI LELQR RAEDLAA FETSVRTIYRD+QALSEAGVPI+GAPGQGYSL Sbjct: 1 MNKTDRLLAIVLELQRKGTLRAEDLAATFETSVRTIYRDMQALSEAGVPIVGAPGQGYSL 60 Query: 61 MEGYFLPPVGFTAEEAVALLMGTDFIEQRLDAEYGSVSKSARRKIEAVLPEPVRAESARV 120 MEGYFLPPV F+ EEAVALL+G D +EQ D +G+ +++ +RK+EA+L V ++ R+ Sbjct: 61 MEGYFLPPVSFSVEEAVALLIGADLVEQAFDQNFGNSARAVQRKVEAILSADVGEQARRI 120 Query: 121 RDTMRLLHAGEPVTGRKEKDYLGQIRRAILERHRLSFTYLKKMPEADGSRKSSREADPYG 180 R T RL+ +EK + + AI+ ++ F Y + P R++ R+ PYG Sbjct: 121 RSTFRLVSPRANNLREQEKAHAQLLHDAIISERKVRFRYRRGTPGEGDDRETVRDVAPYG 180 Query: 181 LALVQGNWTLVARCGLRQDIRHFRLSRMTELAVLEERFSIPAGFNLSRYRPPDDXXXXXX 240 L LV+G+WTL+A C LRQDIR FRLSRM+ L VLEERF +P F+ + Y+P DD Sbjct: 181 LVLVRGSWTLLAHCDLRQDIRRFRLSRMSGLIVLEERFILPDDFHFADYKPLDDRYLEVQ 240 Query: 241 XXXXXXIADKMIETVNYYLETTEEREDGLLVTFRIRQLEELLPYILSWGGEAEVLEPVSL 300 IAD++ E+ N+++E E DG LV R+RQ+EE+L ++L G +A VL P SL Sbjct: 241 IVISPTIADRVKESGNFFIEEITEHPDGFLVRLRVRQIEEILSWVLGLGADAVVLTPESL 300 Query: 301 RRRVREEAEKMFKRY 315 R R+RE+A+K+F+RY Sbjct: 301 RSRIREDAQKLFERY 315 >C3B093.1 C3B093_BACMY Putative uncharacterized protein Length = 313 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 134/316 (42%), Positives = 200/316 (63%), Gaps = 7/316 (2%) Query: 1 MNKTERQLAITLELQRSKMHRAEDLAAQFETSVRTIYRDIQALSEAGVPIIGAPGQGYSL 60 MN+T+R L+I +ELQR ++ A+ LA +FET RTIYRD+QALSE+GVPI PGQGYSL Sbjct: 1 MNRTDRLLSILIELQRKQIVTAQSLAGKFETCKRTIYRDMQALSESGVPIFSMPGQGYSL 60 Query: 61 MEGYFLPPVGFTAEEAVALLMGTDFIEQRLDAEYGSVSKSARRKIEAVLPEPVRAESARV 120 M+GYFLPP+ F EEAV LL+G+D++EQ LD+ + + +KSA+ K+EA+LP + + + Sbjct: 61 MDGYFLPPIQFKPEEAVTLLLGSDYVEQNLDSAFSTHAKSAKEKLEAILPSEQQKKVKEL 120 Query: 121 RDTMRLL---HAGEPVTGRKEKDYLGQIRRAILERHRLSFTYLKKMPEADGSRKSSREAD 177 R T R L + + + + L ++ AI E+ +SF+Y K + S ++ R + Sbjct: 121 RGTFRFLSGTFSHQTFAQEQLEKQLLLLQEAIQEQQCVSFSYRK----PNQSEQNKRTVN 176 Query: 178 PYGLALVQGNWTLVARCGLRQDIRHFRLSRMTELAVLEERFSIPAGFNLSRYRPPDDXXX 237 PYGL + G W +VA C LRQ IRHFRL RM L + F P F L Y+P ++ Sbjct: 177 PYGLVNISGIWYIVAHCLLRQQIRHFRLDRMDNLQQEQTFFIKPENFYLPDYQPENNRTI 236 Query: 238 XXXXXXXXXIADKMIETVNYYLETTEEREDGLLVTFRIRQLEELLPYILSWGGEAEVLEP 297 IA K+IE+ +++++ E+++DG V R ++E+ P++LSWG + +VLEP Sbjct: 237 IIHLLFPSHIAHKIIESRYFFIDSYEQKDDGFHVLLTSRSIDEVFPWVLSWGSQVKVLEP 296 Query: 298 VSLRRRVREEAEKMFK 313 L ++REEA+KM + Sbjct: 297 TILSEKLREEAKKMLQ 312 >C3AII6.1 C3AII6_BACMY Putative uncharacterized protein Length = 313 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 134/316 (42%), Positives = 200/316 (63%), Gaps = 7/316 (2%) Query: 1 MNKTERQLAITLELQRSKMHRAEDLAAQFETSVRTIYRDIQALSEAGVPIIGAPGQGYSL 60 MN+T+R L+I +ELQR ++ A+ LA +FET RTIYRD+QALSE+GVPI PGQGYSL Sbjct: 1 MNRTDRLLSILIELQRKQIVTAQSLAGKFETCKRTIYRDMQALSESGVPIFSMPGQGYSL 60 Query: 61 MEGYFLPPVGFTAEEAVALLMGTDFIEQRLDAEYGSVSKSARRKIEAVLPEPVRAESARV 120 M+GYFLPP+ F EEAV LL+G+D++EQ LD+ + + +KSA+ K+EA+LP + + + Sbjct: 61 MDGYFLPPIQFKPEEAVTLLLGSDYVEQNLDSAFSTHAKSAKEKLEAILPSEQQKKVKEL 120 Query: 121 RDTMRLL---HAGEPVTGRKEKDYLGQIRRAILERHRLSFTYLKKMPEADGSRKSSREAD 177 R T R L + + + + L ++ AI E+ +SF+Y K + S ++ R + Sbjct: 121 RGTFRFLSGTFSHQTFAQEQLEKQLLLLQEAIQEQQCVSFSYRK----PNQSEQNKRTVN 176 Query: 178 PYGLALVQGNWTLVARCGLRQDIRHFRLSRMTELAVLEERFSIPAGFNLSRYRPPDDXXX 237 PYGL + G W +VA C LRQ IRHFRL RM L + F P F L Y+P ++ Sbjct: 177 PYGLVNISGIWYIVAHCLLRQQIRHFRLDRMDNLQQEQTFFIKPENFYLPDYQPENNRTI 236 Query: 238 XXXXXXXXXIADKMIETVNYYLETTEEREDGLLVTFRIRQLEELLPYILSWGGEAEVLEP 297 IA K+IE+ +++++ E+++DG V R ++E+ P++LSWG + +VLEP Sbjct: 237 IIHLLFPSHIAHKIIESRYFFIDSYEQKDDGFHVLLTSRSIDEVFPWVLSWGSQVKVLEP 296 Query: 298 VSLRRRVREEAEKMFK 313 L ++REEA+KM + Sbjct: 297 TILSEKLREEAKKMLQ 312 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,688,940,270 Number of extensions: 64981605 Number of successful extensions: 175089 Number of sequences better than 1.0e-05: 1067 Number of HSP's gapped: 173745 Number of HSP's successfully gapped: 1071 Length of query: 315 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 180 Effective length of database: 1,788,859,178 Effective search space: 321994652040 Effective search space used: 321994652040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)