BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0359.0018.p (400 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3I6P4.1 A3I6P4_9BACI Flavohemoprotein 434 e-120 B1HYZ6.1 B1HYZ6_LYSSC Flavohemoprotein (Hemoglobin-like protein)... 432 e-119 C1P7M0.1 C1P7M0_BACCO Oxidoreductase FAD-binding domain protein 422 e-116 Q2BDR4.1 Q2BDR4_9BACI Nitric oxide dioxygenase 418 e-115 B1D559.1 B1D559_9BACL Oxidoreductase FAD/NAD(P)-binding domain p... 405 e-111 >A3I6P4.1 A3I6P4_9BACI Flavohemoprotein Length = 392 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/381 (55%), Positives = 270/381 (70%), Gaps = 4/381 (1%) Query: 17 VKSTAPVLAEHGTAITSVFYRNLFAAHPELLNVFNHANQAQGRQQXXXXXXXXXXXVHID 76 +K+T PVL HG IT FY+N+F AHPELLN+FNH NQ +GRQQ VHI+ Sbjct: 14 IKATVPVLEVHGVEITKTFYKNMFQAHPELLNIFNHTNQEKGRQQTALANTVYAAAVHIE 73 Query: 77 NLENILPAVVQIAHKHVSLGIKPEQYPIVGEFLLKAIKEVLGDAATDDILKAWEEAYGVI 136 NLE ILPAV+ IAHKH SLGI PE YPIVGE LLKAIKEVLGDAATDDI+ AW EAYGVI Sbjct: 74 NLEAILPAVMLIAHKHRSLGILPEHYPIVGENLLKAIKEVLGDAATDDIINAWAEAYGVI 133 Query: 137 ADAFIGVEAQMYKEAREQENGWNFFKPFTVVRKEQESESITSFYLKPADGSGVPAFKPGQ 196 AD FI VE ++Y++A E GW F+ V +K ES+ +TS Y DGS +PA++PGQ Sbjct: 134 ADIFIQVEEELYQKA-ENNGGWRLFRSLKVAKKVVESDLVTSVYFVNEDGSSLPAYEPGQ 192 Query: 197 YISVRVLIPGEQYTMIRQYSLSQASKPDEFRISVKREADNDPNGVVSVYLHTQVNEGDTV 256 YIS+RV +PGE+Y M RQY+LSQAS D +RISVKRE+D+ PNG VS ++H + GD V Sbjct: 193 YISIRVKVPGEEYLMNRQYTLSQASAEDGYRISVKRESDHTPNGKVSNFIHDDLQVGDLV 252 Query: 257 EVSPPAGEFLLDTAKTTPVAFISGGVGITPMMSMLETVAVSTPDRPTVFLHAARNESLAA 316 +VS PAG F+L+ T P+ F+SGG+G+TP+ SML+++ + ++ F+ ARNE + A Sbjct: 253 DVSVPAGLFVLEET-TAPITFVSGGIGVTPLNSMLQSLKEDSTNKVN-FIQCARNEKVVA 310 Query: 317 FGEDIEKHALNMSNIQYKTYFSDGPDGQITREALEAYVDPTGDAYVCGPVPFMEAMIRNL 376 F +DI+ + N Y +SD D QIT+E L V D YVCGPV FMEA+I+NL Sbjct: 311 FSDDIQGKVNALPNASYTALYSD-EDKQITKELLAERVADNADVYVCGPVGFMEAVIKNL 369 Query: 377 LAMGMKEEQIHYEFFGPALQL 397 +G+K+E+IHYEFFGPA+QL Sbjct: 370 QEIGVKDEKIHYEFFGPAMQL 390 >B1HYZ6.1 B1HYZ6_LYSSC Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) EC=1.14.12.17 Length = 392 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 211/381 (55%), Positives = 268/381 (70%), Gaps = 4/381 (1%) Query: 17 VKSTAPVLAEHGTAITSVFYRNLFAAHPELLNVFNHANQAQGRQQXXXXXXXXXXXVHID 76 +K+T PVL HG IT FY+N+F AHPELLN+FNH NQ +GRQQ VHI+ Sbjct: 14 IKATVPVLEVHGVEITKTFYKNMFQAHPELLNIFNHTNQEKGRQQTALANTVYAAAVHIE 73 Query: 77 NLENILPAVVQIAHKHVSLGIKPEQYPIVGEFLLKAIKEVLGDAATDDILKAWEEAYGVI 136 NLE ILPAV+ IAHKH SLGI PE YPIVGE LLKAIKEVLGDAATDDI+ AW EAYGVI Sbjct: 74 NLEAILPAVMLIAHKHRSLGILPEHYPIVGENLLKAIKEVLGDAATDDIINAWAEAYGVI 133 Query: 137 ADAFIGVEAQMYKEAREQENGWNFFKPFTVVRKEQESESITSFYLKPADGSGVPAFKPGQ 196 AD FI VE ++Y++A E GW F+P V +K ES+ +TS Y DGS +PA++PGQ Sbjct: 134 ADVFIQVEEELYQKA-ENNGGWRLFRPLKVAKKVVESDLVTSVYFVNEDGSALPAYEPGQ 192 Query: 197 YISVRVLIPGEQYTMIRQYSLSQASKPDEFRISVKREADNDPNGVVSVYLHTQVNEGDTV 256 YIS+RV +PG +Y M RQY+LSQAS D +RISVKRE+D PNG VS ++H + GD V Sbjct: 193 YISIRVKVPGVEYLMNRQYTLSQASAEDGYRISVKRESDQTPNGKVSNFIHDDLQVGDLV 252 Query: 257 EVSPPAGEFLLDTAKTTPVAFISGGVGITPMMSMLETVAVSTPDRPTVFLHAARNESLAA 316 +VS PAG F+L+ T P+ F+SGG+G+TP+ SML+++ ++ F+ ARNE + A Sbjct: 253 DVSVPAGLFVLEET-TAPITFVSGGIGVTPLNSMLQSLKDDATNKVN-FIQCARNEKVVA 310 Query: 317 FGEDIEKHALNMSNIQYKTYFSDGPDGQITREALEAYVDPTGDAYVCGPVPFMEAMIRNL 376 F +DI+ + N Y +SD + QIT+E L V D YVCGPV FMEA+I+NL Sbjct: 311 FSDDIQGKVNALPNASYTALYSD-ENKQITKELLAERVADNADVYVCGPVGFMEAVIKNL 369 Query: 377 LAMGMKEEQIHYEFFGPALQL 397 +G+K+E+IHYEFFGPA+QL Sbjct: 370 QEIGVKDEKIHYEFFGPAMQL 390 >C1P7M0.1 C1P7M0_BACCO Oxidoreductase FAD-binding domain protein Length = 403 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 214/389 (55%), Positives = 265/389 (68%), Gaps = 9/389 (2%) Query: 17 VKSTAPVLAEHGTAITSVFYRNLFAAHPELLNVFNHANQAQGRQQXXXXXXXXXXXVHID 76 VKST PVL GT IT+ FY+ +FAAHPELLN+FN NQ+QGRQQ +ID Sbjct: 10 VKSTVPVLKTQGTDITTYFYKTMFAAHPELLNIFNQTNQSQGRQQTALANAVLAAASYID 69 Query: 77 NLENILPAVVQIAHKHVSLGIKPEQYPIVGEFLLKAIKEVLGDAATDDILKAWEEAYGVI 136 +LE ILP V QIAHKH LGI+PE YPIVGEFLLKAIKEVLGDAAT+++L+AW EAYG I Sbjct: 70 HLETILPVVEQIAHKHRGLGIQPEHYPIVGEFLLKAIKEVLGDAATEEVLQAWAEAYGSI 129 Query: 137 ADAFIGVEAQMYKEAREQENGWNFFKPFTVVRKEQESESITSFYLKPADGSGVPAFKPGQ 196 AD FI VE +MY+EA + GW FKPFTVV+K +ES +ITSFYLKPADG VP++ PGQ Sbjct: 130 ADVFIEVEKKMYREAETKRGGWEGFKPFTVVKKVKESNAITSFYLKPADGGPVPSYLPGQ 189 Query: 197 YISVRVLIPGEQYTMIRQYSLSQASKPDEFRISVKREADNDPNGVVSVYLHTQVNEGDTV 256 Y+++RV IPGE Y RQYSLS + FRISVKREAD++PNG VS YLH V GD + Sbjct: 190 YLTLRVKIPGETYLFNRQYSLSCGPGHEYFRISVKREADHEPNGKVSTYLHDHVKTGDEL 249 Query: 257 EVSPPAGEFLLDTAKTTPVAFISGGVGITPMMSMLETVAVSTPDRPTVFLHAARNESLAA 316 E+S PAG F L + PVA ISGGVG+TP+MSMLE +A + R F+HAARNE A Sbjct: 250 EISAPAGAFTL-ADEPAPVALISGGVGLTPLMSMLEALADAGSKREIHFIHAARNEDFHA 308 Query: 317 FGEDIEKHALNMSNIQY------KTYFSDGPD--GQITREALEAYVDPTGDAYVCGPVPF 368 F + + H + N Y Y + G D G +++ L V Y+CGPVPF Sbjct: 309 FKAEAKHHIEKLENGHYYFGYGHPLYENSGCDFTGHLSKAFLGKVVTAQTVCYICGPVPF 368 Query: 369 MEAMIRNLLAMGMKEEQIHYEFFGPALQL 397 ++ ++ L +G+ +E I YEFFGPA++L Sbjct: 369 LKNTVQILTELGVAKENIRYEFFGPAIEL 397 >Q2BDR4.1 Q2BDR4_9BACI Nitric oxide dioxygenase Length = 388 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 214/383 (55%), Positives = 265/383 (69%), Gaps = 12/383 (3%) Query: 28 GTAITSVFYRNLFAAHPELLNVFNHANQAQGRQQXXXXXXXXXXXVHIDNLENILPAVVQ 87 GT IT+VFYRNLF++HPELLN+FNHANQ +GRQQ V+IDNLE I+PAV Q Sbjct: 5 GTEITTVFYRNLFSSHPELLNIFNHANQQKGRQQTALANTILAAAVYIDNLEAIIPAVKQ 64 Query: 88 IAHKHVSLGIKPEQYPIVGEFLLKAIKEVLGDAATDDILKAWEEAYGVIADAFIGVEAQM 147 IAHKH SLG+KPE YPIVGE LL AIKEVLG+AATD+I+ AW +AYGVIADAFIG+E +M Sbjct: 65 IAHKHRSLGVKPEHYPIVGEHLLGAIKEVLGNAATDEIIGAWADAYGVIADAFIGIEKEM 124 Query: 148 YKEAREQENGWNFFKPFTVVRKEQESESITSFYLKPADGSGVPAFKPGQYISVRVLIPGE 207 Y+EA Q GW FK FTV K +ES+ ITSFYLKP+DGS VPAF PGQYI+VR+ IPGE Sbjct: 125 YEEAASQPAGWEDFKEFTVTDKVKESDVITSFYLKPSDGSTVPAFLPGQYITVRIGIPGE 184 Query: 208 QYTMIRQYSLSQASKPDEFRISVKREA-DNDPNGVVSVYLHTQVNEGDTVEVSPPAGEFL 266 +Y M RQYSLS A D FRISVKRE+ +N P G VS YLH V G +EV+ PAG+F+ Sbjct: 185 EYLMNRQYSLSAAPGKDYFRISVKRESEENTPEGKVSNYLHDAVEAGSIIEVTVPAGDFV 244 Query: 267 LDTAKTTPVAFISGGVGITPMMSMLETVAVSTPDRPTVFLHAARNESLAAFGEDIE--KH 324 L PV F+SGGVGITP MSM+ ++A P R F++A+R+ S F E++ + Sbjct: 245 LAADADEPVVFLSGGVGITPFMSMINSIAEQNPGRKVEFINASRSSSHQPFKEELSSLEA 304 Query: 325 ALNMSNIQYKTYFSDGPDGQITREALEAYVDPT---------GDAYVCGPVPFMEAMIRN 375 L S + Y + D Q R A E Y+D D YVCGPVPF+ A+++ Sbjct: 305 ELENSKLLYVYEKAKETDRQDARFAKEGYIDADFLREILIDGADYYVCGPVPFLRAIVKG 364 Query: 376 LLAMGMKEEQIHYEFFGPALQLE 398 L + ++E +IH+EFFGP+L LE Sbjct: 365 LKELHVEESKIHFEFFGPSLNLE 387 >B1D559.1 B1D559_9BACL Oxidoreductase FAD/NAD(P)-binding domain protein Length = 412 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 212/397 (53%), Positives = 259/397 (65%), Gaps = 14/397 (3%) Query: 17 VKSTAPVLAEHGTAITSVFYRNLFAAHPELLNVFNHANQAQGRQQXXXXXXXXXXXVHID 76 +KST PVL HGTAIT FY+ LF +HPEL+NVFNHANQ QG+QQ ++ID Sbjct: 10 IKSTVPVLEVHGTAITKRFYQLLFTSHPELMNVFNHANQRQGKQQTALANTVYAAALYID 69 Query: 77 NLENILPAVVQIAHKHVSLGIKPEQYPIVGEFLLKAIKEVLGDAATDDILKAWEEAYGVI 136 LE ILPAV QIAHKH SLGI +QYPIVG+ LL+AIKEVLGDAAT++IL AW EAYGVI Sbjct: 70 KLETILPAVKQIAHKHRSLGITADQYPIVGQNLLQAIKEVLGDAATEEILNAWAEAYGVI 129 Query: 137 ADAFIGVEAQMYKEAREQENGWNFFKPFTVVRKEQESESITSFYLKPADGSGVPAFKPGQ 196 A+ FI VEA+MYKEA EQ+ GW ++ F + RK QES ITSFYL P DG + F+PGQ Sbjct: 130 ANVFISVEAEMYKEAEEQQGGWAGYRAFRIQRKVQESNVITSFYLVPEDGGAIATFEPGQ 189 Query: 197 YISVRVLIPGEQYTMIRQYSLSQASKPDEFRISVKRE---ADNDPNGVVSVYLHTQVNEG 253 Y+SV++ IP ++ T IRQYSLS A +RISVKRE D D GVVSVYLH QV EG Sbjct: 190 YVSVKMSIPNQKNTHIRQYSLSDAPGKPYYRISVKREDSQQDKDA-GVVSVYLHEQVKEG 248 Query: 254 DTVEVSPPAGEFLLDTAKTTPVAFISGGVGITPMMSMLETVAVSTPDRPTVFLHAARNES 313 D + +S PAG+F LD T PV ISGGVG+TPM+SML T+ + DRP F+HAA+N Sbjct: 249 DVLWLSAPAGDFTLDLKDTRPVVLISGGVGLTPMVSMLNTLVDANTDRPITFIHAAQNGR 308 Query: 314 LAAFGEDIEKHALNMSNIQYKTYFSDGPDGQITREALEAYVD--------PTGDA--YVC 363 A + +E+ + + ++ + E YVD P+ DA Y C Sbjct: 309 FHALKQQVEEKVDQAAQAKAYWCYAQPTEQDTGSYHKEGYVDLPWLQEIIPSKDAAFYFC 368 Query: 364 GPVPFMEAMIRNLLAMGMKEEQIHYEFFGPALQLEHA 400 GP PFM + R LL G+ E IHYEFFGP L+ A Sbjct: 369 GPTPFMAHINRQLLEWGVPAEDIHYEFFGPKGSLDEA 405 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,318,606,060 Number of extensions: 94698421 Number of successful extensions: 233634 Number of sequences better than 1.0e-05: 2856 Number of HSP's gapped: 228865 Number of HSP's successfully gapped: 2862 Length of query: 400 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 262 Effective length of database: 1,760,596,133 Effective search space: 461276186846 Effective search space used: 461276186846 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)