BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0359.0017.p (182 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3I6P5.1 A3I6P5_9BACI Putative uncharacterized protein 196 7e-49 B1HYZ7.1 B1HYZ7_LYSSC HTH-type transcriptional regulator 195 2e-48 Q65M01.1 NSRR_BACLD HTH-type transcriptional regulator nsrR 193 5e-48 A8FBG0.1 A8FBG0_BACP2 Possible transcriptional regulator 185 1e-45 B4AFT3.1 B4AFT3_BACPU HTH-type transcriptional regulator NsrR 184 4e-45 >A3I6P5.1 A3I6P5_9BACI Putative uncharacterized protein Length = 145 Score = 196 bits (498), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 95/142 (66%), Positives = 110/142 (77%) Query: 19 MRLTLYTDFSLRVLMYLGTKEQSELSTIQDISNAYHISKNHLMKVSHELGQAGYIETVRG 78 MRLTLYTD+SLR L+YLG KE +LSTIQ+IS+AY+ISKNHLMKV+H+LG GYIET+RG Sbjct: 1 MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISDAYNISKNHLMKVTHQLGLLGYIETIRG 60 Query: 79 RGGGIRLAKAPELINIGEVVRRMEDDFHLVECFDPSGNNCPISPACGLKGVLGRALAAYL 138 RGGGIRLA P+ I IGE+VR E+DFHLVECFD N C I+P C LKGVL AL AYL Sbjct: 61 RGGGIRLAIDPKTITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120 Query: 139 QVLSEYTLQDLLLNKHDLQAIF 160 VL YTL D L +K L A+ Sbjct: 121 TVLDRYTLDDFLHSKEKLMALL 142 >B1HYZ7.1 B1HYZ7_LYSSC HTH-type transcriptional regulator Length = 145 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 95/142 (66%), Positives = 109/142 (76%) Query: 19 MRLTLYTDFSLRVLMYLGTKEQSELSTIQDISNAYHISKNHLMKVSHELGQAGYIETVRG 78 MRLTLYTD+SLR L+YLG KE +LSTIQ+IS AY+ISKNHLMKV+H+LG GYIET+RG Sbjct: 1 MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISEAYNISKNHLMKVTHQLGLLGYIETIRG 60 Query: 79 RGGGIRLAKAPELINIGEVVRRMEDDFHLVECFDPSGNNCPISPACGLKGVLGRALAAYL 138 RGGGIRLA P+ I IGE+VR E+DFHLVECFD N C I+P C LKGVL AL AYL Sbjct: 61 RGGGIRLAIDPKSITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120 Query: 139 QVLSEYTLQDLLLNKHDLQAIF 160 VL YTL D L +K L A+ Sbjct: 121 TVLDRYTLDDFLHSKEKLMALL 142 >Q65M01.1 NSRR_BACLD HTH-type transcriptional regulator nsrR Length = 143 Score = 193 bits (491), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 88/142 (61%), Positives = 116/142 (81%) Query: 19 MRLTLYTDFSLRVLMYLGTKEQSELSTIQDISNAYHISKNHLMKVSHELGQAGYIETVRG 78 M+LT YTD+SLRVL++L TK +EL I+DI+++Y ISKNHLMKV +ELG+ GY+ET+RG Sbjct: 1 MKLTNYTDYSLRVLIFLATKNSNELVNIKDIADSYSISKNHLMKVIYELGKLGYVETIRG 60 Query: 79 RGGGIRLAKAPELINIGEVVRRMEDDFHLVECFDPSGNNCPISPACGLKGVLGRALAAYL 138 R GGIRL KAPELINIGEV+R EDDF+LVECF+ N+C +SP CGLK VL +AL+AYL Sbjct: 61 RNGGIRLGKAPELINIGEVIRHTEDDFNLVECFNGEKNHCILSPICGLKHVLNKALSAYL 120 Query: 139 QVLSEYTLQDLLLNKHDLQAIF 160 VL +YTLQD+++N+ ++ + Sbjct: 121 DVLDQYTLQDIIMNQDHIRKLL 142 >A8FBG0.1 A8FBG0_BACP2 Possible transcriptional regulator Length = 143 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 89/142 (62%), Positives = 109/142 (76%) Query: 19 MRLTLYTDFSLRVLMYLGTKEQSELSTIQDISNAYHISKNHLMKVSHELGQAGYIETVRG 78 M+LT YTDFSLRVL+YL ++E +ELS IQ I++ Y ISKNHL KV + LG+ GY+ET+RG Sbjct: 1 MKLTNYTDFSLRVLIYLASRENNELSNIQQIADVYDISKNHLTKVIYHLGKRGYVETIRG 60 Query: 79 RGGGIRLAKAPELINIGEVVRRMEDDFHLVECFDPSGNNCPISPACGLKGVLGRALAAYL 138 R GGIRL K+PE INIGEVVR EDD +VECFDP N+C ISP C LK VL AL+AYL Sbjct: 61 RNGGIRLGKSPESINIGEVVRYTEDDLVMVECFDPRKNSCIISPICSLKHVLHEALSAYL 120 Query: 139 QVLSEYTLQDLLLNKHDLQAIF 160 +VL +YTL+DL NK L+ + Sbjct: 121 RVLDQYTLKDLTQNKDALRELL 142 >B4AFT3.1 B4AFT3_BACPU HTH-type transcriptional regulator NsrR Length = 143 Score = 184 bits (466), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 89/142 (62%), Positives = 108/142 (76%) Query: 19 MRLTLYTDFSLRVLMYLGTKEQSELSTIQDISNAYHISKNHLMKVSHELGQAGYIETVRG 78 M+LT YTDFSLRVL+YL ++E +ELS IQ I++ Y ISKNHL KV + LG+ GY+ET+RG Sbjct: 1 MKLTNYTDFSLRVLIYLASRENNELSNIQQIADVYGISKNHLTKVIYHLGKRGYVETIRG 60 Query: 79 RGGGIRLAKAPELINIGEVVRRMEDDFHLVECFDPSGNNCPISPACGLKGVLGRALAAYL 138 R GGIRL K+PE INIGEVVR EDD +VECFDP N+C ISP C LK VL AL AYL Sbjct: 61 RNGGIRLGKSPESINIGEVVRYTEDDLVMVECFDPRKNSCIISPICSLKHVLHEALTAYL 120 Query: 139 QVLSEYTLQDLLLNKHDLQAIF 160 +VL +YTL+DL NK L+ + Sbjct: 121 RVLDKYTLKDLTQNKDALRELL 142 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 942,727,505 Number of extensions: 35938251 Number of successful extensions: 84296 Number of sequences better than 1.0e-05: 955 Number of HSP's gapped: 83671 Number of HSP's successfully gapped: 955 Length of query: 182 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 55 Effective length of database: 1,864,227,298 Effective search space: 102532501390 Effective search space used: 102532501390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)