BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0359.0013.p (149 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9E9D4.1 B9E9D4_MACCJ Respiratory nitrate reductase delta chain 184 2e-45 Q5WK49.1 Q5WK49_BACSK Respiratory nitrate reductase delta chain ... 171 1e-41 Q8NV26.1 Q8NV26_STAAW MW2317 protein 164 3e-39 Q5HDG1.1 Q5HDG1_STAAC Respiratory nitrate reductase, delta subunit 163 4e-39 Q2FVM3.1 Q2FVM3_STAA8 Respiratory nitrate reductase, delta subun... 163 4e-39 >B9E9D4.1 B9E9D4_MACCJ Respiratory nitrate reductase delta chain Length = 225 Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 84/140 (60%), Positives = 108/140 (77%) Query: 1 VIDLSKLHNFKQSFGYFAPQLMYPEKLDFHPAFLEEAFEAGHPAYPHVHAYWSLMQTFSL 60 VIDL+KL+++K++FG+F+ QL+YPEKL+FHP + F HPAY V+ YW+ M SL Sbjct: 34 VIDLNKLYDYKRAFGFFSHQLVYPEKLNFHPREFDGVFAEDHPAYEAVNQYWNNMHEISL 93 Query: 61 DEIQENYAATFDFQRDCALYMTYFKFEDAKERGQILAKLKILYEMYGLEMPEGELPDYLP 120 EIQE Y +TFDF++ LYMTY KFED KERGQ+LA+LK+LYEM+GLEMP EL D+LP Sbjct: 94 SEIQEVYTSTFDFEKKTTLYMTYVKFEDKKERGQMLARLKVLYEMFGLEMPSSELSDFLP 153 Query: 121 LMCEFLYAAEWLNDPAAPEN 140 LMCEF+YAA+W D A E+ Sbjct: 154 LMCEFIYAADWRGDERAEES 173 >Q5WK49.1 Q5WK49_BACSK Respiratory nitrate reductase delta chain EC=1.7.99.4 Length = 230 Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 79/131 (60%), Positives = 97/131 (74%) Query: 1 VIDLSKLHNFKQSFGYFAPQLMYPEKLDFHPAFLEEAFEAGHPAYPHVHAYWSLMQTFSL 60 VIDL KLH K F +FA QLMYPEKLDFHP EA AGHPA+P + YW LMQ +S Sbjct: 42 VIDLEKLHEQKSRFAFFARQLMYPEKLDFHPDVWTEALTAGHPAHPSLQKYWHLMQNYSF 101 Query: 61 DEIQENYAATFDFQRDCALYMTYFKFEDAKERGQILAKLKILYEMYGLEMPEGELPDYLP 120 ++I+E Y TFDFQ+D LYMT++K+ED++ERG +L +LK YE++GL + EL DYLP Sbjct: 102 EQIEEMYVQTFDFQKDTTLYMTFYKYEDSRERGALLVRLKQAYELFGLAIEGTELSDYLP 161 Query: 121 LMCEFLYAAEW 131 LMCEFLYAA W Sbjct: 162 LMCEFLYAAPW 172 >Q8NV26.1 Q8NV26_STAAW MW2317 protein Length = 196 Score = 164 bits (415), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 79/140 (56%), Positives = 96/140 (68%) Query: 1 VIDLSKLHNFKQSFGYFAPQLMYPEKLDFHPAFLEEAFEAGHPAYPHVHAYWSLMQTFSL 60 VI+ +++SFGY A QL +PEKL FHP EE HPAY + A+ ++M TFSL Sbjct: 6 VINFDNFKKYQESFGYMAQQLCFPEKLTFHPKTFEETISTDHPAYEDLVAFRNVMMTFSL 65 Query: 61 DEIQENYAATFDFQRDCALYMTYFKFEDAKERGQILAKLKILYEMYGLEMPEGELPDYLP 120 EI+ Y TFDF + LYMTY KF+ KERGQ+LAKLK+LYEM+GLEM + EL DYLP Sbjct: 66 SEIKAIYTDTFDFTKKAPLYMTYNKFDTQKERGQMLAKLKVLYEMFGLEMVDNELSDYLP 125 Query: 121 LMCEFLYAAEWLNDPAAPEN 140 LM +FL AEW NDP A EN Sbjct: 126 LMLQFLQVAEWRNDPIAEEN 145 >Q5HDG1.1 Q5HDG1_STAAC Respiratory nitrate reductase, delta subunit Length = 196 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 79/140 (56%), Positives = 96/140 (68%) Query: 1 VIDLSKLHNFKQSFGYFAPQLMYPEKLDFHPAFLEEAFEAGHPAYPHVHAYWSLMQTFSL 60 VI+ +++SFGY A QL +PEKL FHP EE HPAY + A+ ++M TFSL Sbjct: 6 VINFDNFKKYQESFGYMAQQLCFPEKLTFHPKTFEETISKDHPAYEDLVAFRNVMMTFSL 65 Query: 61 DEIQENYAATFDFQRDCALYMTYFKFEDAKERGQILAKLKILYEMYGLEMPEGELPDYLP 120 EI+ Y TFDF + LYMTY KF+ KERGQ+LAKLK+LYEM+GLEM + EL DYLP Sbjct: 66 SEIKAIYTDTFDFTKKAPLYMTYNKFDTQKERGQMLAKLKVLYEMFGLEMVDNELSDYLP 125 Query: 121 LMCEFLYAAEWLNDPAAPEN 140 LM +FL AEW NDP A EN Sbjct: 126 LMLQFLQVAEWRNDPRAEEN 145 >Q2FVM3.1 Q2FVM3_STAA8 Respiratory nitrate reductase, delta subunit, putative Length = 196 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 79/140 (56%), Positives = 96/140 (68%) Query: 1 VIDLSKLHNFKQSFGYFAPQLMYPEKLDFHPAFLEEAFEAGHPAYPHVHAYWSLMQTFSL 60 VI+ +++SFGY A QL +PEKL FHP EE HPAY + A+ ++M TFSL Sbjct: 6 VINFDNFKKYQESFGYMAQQLCFPEKLTFHPKTFEETISKDHPAYEDLVAFRNVMMTFSL 65 Query: 61 DEIQENYAATFDFQRDCALYMTYFKFEDAKERGQILAKLKILYEMYGLEMPEGELPDYLP 120 EI+ Y TFDF + LYMTY KF+ KERGQ+LAKLK+LYEM+GLEM + EL DYLP Sbjct: 66 SEIKAIYTDTFDFTKKAPLYMTYNKFDTQKERGQMLAKLKVLYEMFGLEMVDNELSDYLP 125 Query: 121 LMCEFLYAAEWLNDPAAPEN 140 LM +FL AEW NDP A EN Sbjct: 126 LMLQFLQVAEWRNDPRAEEN 145 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.140 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 946,373,158 Number of extensions: 37061800 Number of successful extensions: 66890 Number of sequences better than 1.0e-05: 236 Number of HSP's gapped: 66892 Number of HSP's successfully gapped: 236 Length of query: 149 Length of database: 3,060,696,203 Length adjustment: 111 Effective length of query: 38 Effective length of database: 2,014,963,538 Effective search space: 76568614444 Effective search space used: 76568614444 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 126 (53.1 bits)