BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0359.0007.p
         (35 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q5WK45.1 Q5WK45_BACSK Two-component response regulator of nitrat...    69   1e-10
B3KJ67.1 B3KJ67_9BACI Response regulator receiver                      66   1e-09
Q7WZY4.1 NREC_STACT Oxygen regulatory protein nreC                     64   4e-09
C2LWN9.1 C2LWN9_STAHO Transcriptional regulatory protein DegU          63   9e-09
Q4L8Q6.1 NREC_STAHJ Oxygen regulatory protein nreC                     61   3e-08

>Q5WK45.1 Q5WK45_BACSK Two-component response regulator of nitrate reduction
          Length = 215

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/35 (97%), Positives = 35/35 (100%)

Query: 1   VKTVEAHKSKIMEKLNLKSRPELVEYALKKKLLDF 35
           VKTVEAHK+KIMEKLNLKSRPELVEYALKKKLLDF
Sbjct: 181 VKTVEAHKAKIMEKLNLKSRPELVEYALKKKLLDF 215


>B3KJ67.1 B3KJ67_9BACI Response regulator receiver
          Length = 215

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/35 (94%), Positives = 34/35 (97%)

Query: 1   VKTVEAHKSKIMEKLNLKSRPELVEYALKKKLLDF 35
           VKTVEAHK+KIMEKL LKSRPELVEYALKKKLLDF
Sbjct: 181 VKTVEAHKAKIMEKLKLKSRPELVEYALKKKLLDF 215


>Q7WZY4.1 NREC_STACT Oxygen regulatory protein nreC
          Length = 217

 Score = 64.3 bits (155), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/35 (88%), Positives = 34/35 (97%)

Query: 1   VKTVEAHKSKIMEKLNLKSRPELVEYALKKKLLDF 35
           VKTVEAHK+ IM+KLNLKS+PELVEYALKKKLLDF
Sbjct: 183 VKTVEAHKTHIMQKLNLKSKPELVEYALKKKLLDF 217


>C2LWN9.1 C2LWN9_STAHO Transcriptional regulatory protein DegU
          Length = 217

 Score = 62.8 bits (151), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/35 (88%), Positives = 33/35 (94%)

Query: 1   VKTVEAHKSKIMEKLNLKSRPELVEYALKKKLLDF 35
           VKTVEAHK+ IM KLNLKS+PELVEYALKKKLLDF
Sbjct: 183 VKTVEAHKTHIMTKLNLKSKPELVEYALKKKLLDF 217


>Q4L8Q6.1 NREC_STAHJ Oxygen regulatory protein nreC
          Length = 217

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/35 (85%), Positives = 33/35 (94%)

Query: 1   VKTVEAHKSKIMEKLNLKSRPELVEYALKKKLLDF 35
           VKTVEAHK+ IM KL+LKS+PELVEYALKKKLLDF
Sbjct: 183 VKTVEAHKTHIMTKLDLKSKPELVEYALKKKLLDF 217


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.130    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 160,104,169
Number of extensions: 2580861
Number of successful extensions: 11434
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 11434
Number of HSP's successfully gapped: 27
Length of query: 35
Length of database: 3,060,696,203
Length adjustment: 9
Effective length of query: 26
Effective length of database: 2,975,907,068
Effective search space: 77373583768
Effective search space used: 77373583768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)