BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0359.0003.p (345 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2VSZ6.1 C2VSZ6_BACCE Molybdenum cofactor biosynthesis protein A 443 e-122 Q81RB7.1 Q81RB7_BACAN Molybdenum cofactor biosynthesis protein A 443 e-122 C3P883.1 C3P883_BACAA Molybdenum cofactor biosynthesis protein A 443 e-122 B1UN37.1 B1UN37_BACAN Molybdenum cofactor biosynthesis protein A 443 e-122 B1GGY8.1 B1GGY8_BACAN Molybdenum cofactor biosynthesis protein A 443 e-122 >C2VSZ6.1 C2VSZ6_BACCE Molybdenum cofactor biosynthesis protein A Length = 333 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 204/333 (61%), Positives = 264/333 (79%) Query: 13 IQDQLKRPIRDLRLSLTDRCNFRCSYCMPKEIFGEDYAFLPARELLSFAEILRLTRLFVS 72 ++D LKRP++DLR+S+ DRCNFRC+YCMP E+FG DYAFL LL+F EI RL RLF+S Sbjct: 1 MKDSLKRPLQDLRISVIDRCNFRCTYCMPAEVFGPDYAFLQEECLLTFDEIERLARLFIS 60 Query: 73 LGVVKIRLTGGEPLLRKDLPELVAGIRSLNGVEDIGLTTNGVLLGQQAKGLYAAGLRRLN 132 +GV KIRLTGGEPLLRKDLP+L+A + L G++DIGLTTNG+ L +QAK L AGL+R+N Sbjct: 61 MGVNKIRLTGGEPLLRKDLPKLIARLAKLEGLKDIGLTTNGIHLAKQAKALKEAGLKRVN 120 Query: 133 ISLDALHPEIFGTMNGRGLKPSLILKHIDQAREMGYEIKVNMVVQKGVNESEILPMAAYF 192 ISLDA+ +F +NGR + +LK I+ A+E G E+KVNMVV+KG+N+S+ILPMA YF Sbjct: 121 ISLDAIEDRVFQKINGRHVSTKPVLKGIEAAKEAGLEVKVNMVVKKGMNDSQILPMAQYF 180 Query: 193 KERKITLRFIEFMDAGNDNGWSLAKVVTKKEILQSLREVYELEALEQDFYGEVAQRYRYK 252 KE++I LRFIEFMD G+ NGW+ +VVTK+++++ + VY +E ++ ++GEVA+ YRY Sbjct: 181 KEQEIQLRFIEFMDVGSTNGWNFEQVVTKEQLIEKINRVYPIEPVKPRYFGEVAKLYRYV 240 Query: 253 DSDAEIGFITSVSESFCSSCTRARLSSDGKFYTCLFASGGTDLRSLLRSGADDSSLLNVI 312 SDAE+GFITSVSESFCSSCTRAR+S+DGKFYTCLF GTDLR+LLR D+SLL ++ Sbjct: 241 GSDAEVGFITSVSESFCSSCTRARISADGKFYTCLFGEKGTDLRTLLRENISDASLLKIL 300 Query: 313 KDVWEKRTDRYSDERQEHTAAGRKKISMSYIGG 345 + WE RTDRYSDER + R+K+ MSYIGG Sbjct: 301 QHTWEYRTDRYSDERTAESTNKRQKVEMSYIGG 333 >Q81RB7.1 Q81RB7_BACAN Molybdenum cofactor biosynthesis protein A Length = 337 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 204/334 (61%), Positives = 265/334 (79%) Query: 12 SIQDQLKRPIRDLRLSLTDRCNFRCSYCMPKEIFGEDYAFLPARELLSFAEILRLTRLFV 71 +++D LKRP++DLR+S+ DRCNFRC+YCMP E+FG DYAFL LL+F EI RL RLF+ Sbjct: 4 NMKDSLKRPLQDLRISVIDRCNFRCTYCMPAEVFGPDYAFLQEECLLTFDEIERLARLFI 63 Query: 72 SLGVVKIRLTGGEPLLRKDLPELVAGIRSLNGVEDIGLTTNGVLLGQQAKGLYAAGLRRL 131 S+GV KIRLTGGEPLLRKDLP+L+A + L G++DIGLTTNG+ L +QAK L AGL+R+ Sbjct: 64 SMGVNKIRLTGGEPLLRKDLPKLIARLAKLEGLKDIGLTTNGIHLAKQAKALKEAGLKRV 123 Query: 132 NISLDALHPEIFGTMNGRGLKPSLILKHIDQAREMGYEIKVNMVVQKGVNESEILPMAAY 191 NISLDA+ +F +NGR + +LK I+ A+E G E+KVNMVV+KG+N+S+ILPMA Y Sbjct: 124 NISLDAIEDRVFQKINGRHVSTKPVLKGIEAAKEAGLEVKVNMVVKKGMNDSQILPMAQY 183 Query: 192 FKERKITLRFIEFMDAGNDNGWSLAKVVTKKEILQSLREVYELEALEQDFYGEVAQRYRY 251 FKE++I LRFIEFMD G+ NGW+ +VVTK+++++ + VY +E ++ ++GEVA+ YRY Sbjct: 184 FKEQEIQLRFIEFMDVGSTNGWNFEQVVTKEQLIEKINRVYPIEPVKPRYFGEVAKLYRY 243 Query: 252 KDSDAEIGFITSVSESFCSSCTRARLSSDGKFYTCLFASGGTDLRSLLRSGADDSSLLNV 311 +DAE+GFITSVSESFCSSCTRAR+S+DGKFYTCLF GTDLRSLLR D+SLL + Sbjct: 244 VGNDAEVGFITSVSESFCSSCTRARISADGKFYTCLFGEKGTDLRSLLRENISDASLLKI 303 Query: 312 IKDVWEKRTDRYSDERQEHTAAGRKKISMSYIGG 345 ++ WE RTDRYSDER + R+K+ MSYIGG Sbjct: 304 LQHTWEFRTDRYSDERTAESTNKRQKVEMSYIGG 337 >C3P883.1 C3P883_BACAA Molybdenum cofactor biosynthesis protein A Length = 337 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 204/334 (61%), Positives = 265/334 (79%) Query: 12 SIQDQLKRPIRDLRLSLTDRCNFRCSYCMPKEIFGEDYAFLPARELLSFAEILRLTRLFV 71 +++D LKRP++DLR+S+ DRCNFRC+YCMP E+FG DYAFL LL+F EI RL RLF+ Sbjct: 4 NMKDSLKRPLQDLRISVIDRCNFRCTYCMPAEVFGPDYAFLQEECLLTFDEIERLARLFI 63 Query: 72 SLGVVKIRLTGGEPLLRKDLPELVAGIRSLNGVEDIGLTTNGVLLGQQAKGLYAAGLRRL 131 S+GV KIRLTGGEPLLRKDLP+L+A + L G++DIGLTTNG+ L +QAK L AGL+R+ Sbjct: 64 SMGVNKIRLTGGEPLLRKDLPKLIARLAKLEGLKDIGLTTNGIHLAKQAKALKEAGLKRV 123 Query: 132 NISLDALHPEIFGTMNGRGLKPSLILKHIDQAREMGYEIKVNMVVQKGVNESEILPMAAY 191 NISLDA+ +F +NGR + +LK I+ A+E G E+KVNMVV+KG+N+S+ILPMA Y Sbjct: 124 NISLDAIEDRVFQKINGRHVSTKPVLKGIEAAKEAGLEVKVNMVVKKGMNDSQILPMAQY 183 Query: 192 FKERKITLRFIEFMDAGNDNGWSLAKVVTKKEILQSLREVYELEALEQDFYGEVAQRYRY 251 FKE++I LRFIEFMD G+ NGW+ +VVTK+++++ + VY +E ++ ++GEVA+ YRY Sbjct: 184 FKEQEIQLRFIEFMDVGSTNGWNFEQVVTKEQLIEKINRVYPIEPVKPRYFGEVAKLYRY 243 Query: 252 KDSDAEIGFITSVSESFCSSCTRARLSSDGKFYTCLFASGGTDLRSLLRSGADDSSLLNV 311 +DAE+GFITSVSESFCSSCTRAR+S+DGKFYTCLF GTDLRSLLR D+SLL + Sbjct: 244 VGNDAEVGFITSVSESFCSSCTRARISADGKFYTCLFGEKGTDLRSLLRENISDASLLKI 303 Query: 312 IKDVWEKRTDRYSDERQEHTAAGRKKISMSYIGG 345 ++ WE RTDRYSDER + R+K+ MSYIGG Sbjct: 304 LQHTWEFRTDRYSDERTAESTNKRQKVEMSYIGG 337 >B1UN37.1 B1UN37_BACAN Molybdenum cofactor biosynthesis protein A Length = 337 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 204/334 (61%), Positives = 265/334 (79%) Query: 12 SIQDQLKRPIRDLRLSLTDRCNFRCSYCMPKEIFGEDYAFLPARELLSFAEILRLTRLFV 71 +++D LKRP++DLR+S+ DRCNFRC+YCMP E+FG DYAFL LL+F EI RL RLF+ Sbjct: 4 NMKDSLKRPLQDLRISVIDRCNFRCTYCMPAEVFGPDYAFLQEECLLTFDEIERLARLFI 63 Query: 72 SLGVVKIRLTGGEPLLRKDLPELVAGIRSLNGVEDIGLTTNGVLLGQQAKGLYAAGLRRL 131 S+GV KIRLTGGEPLLRKDLP+L+A + L G++DIGLTTNG+ L +QAK L AGL+R+ Sbjct: 64 SMGVNKIRLTGGEPLLRKDLPKLIARLAKLEGLKDIGLTTNGIHLAKQAKALKEAGLKRV 123 Query: 132 NISLDALHPEIFGTMNGRGLKPSLILKHIDQAREMGYEIKVNMVVQKGVNESEILPMAAY 191 NISLDA+ +F +NGR + +LK I+ A+E G E+KVNMVV+KG+N+S+ILPMA Y Sbjct: 124 NISLDAIEDRVFQKINGRHVSTKPVLKGIEAAKEAGLEVKVNMVVKKGMNDSQILPMAQY 183 Query: 192 FKERKITLRFIEFMDAGNDNGWSLAKVVTKKEILQSLREVYELEALEQDFYGEVAQRYRY 251 FKE++I LRFIEFMD G+ NGW+ +VVTK+++++ + VY +E ++ ++GEVA+ YRY Sbjct: 184 FKEQEIQLRFIEFMDVGSTNGWNFEQVVTKEQLIEKINRVYPIEPVKPRYFGEVAKLYRY 243 Query: 252 KDSDAEIGFITSVSESFCSSCTRARLSSDGKFYTCLFASGGTDLRSLLRSGADDSSLLNV 311 +DAE+GFITSVSESFCSSCTRAR+S+DGKFYTCLF GTDLRSLLR D+SLL + Sbjct: 244 VGNDAEVGFITSVSESFCSSCTRARISADGKFYTCLFGEKGTDLRSLLRENISDASLLKI 303 Query: 312 IKDVWEKRTDRYSDERQEHTAAGRKKISMSYIGG 345 ++ WE RTDRYSDER + R+K+ MSYIGG Sbjct: 304 LQHTWEFRTDRYSDERTAESTNKRQKVEMSYIGG 337 >B1GGY8.1 B1GGY8_BACAN Molybdenum cofactor biosynthesis protein A Length = 337 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 204/334 (61%), Positives = 265/334 (79%) Query: 12 SIQDQLKRPIRDLRLSLTDRCNFRCSYCMPKEIFGEDYAFLPARELLSFAEILRLTRLFV 71 +++D LKRP++DLR+S+ DRCNFRC+YCMP E+FG DYAFL LL+F EI RL RLF+ Sbjct: 4 NMKDSLKRPLQDLRISVIDRCNFRCTYCMPAEVFGPDYAFLQEECLLTFDEIERLARLFI 63 Query: 72 SLGVVKIRLTGGEPLLRKDLPELVAGIRSLNGVEDIGLTTNGVLLGQQAKGLYAAGLRRL 131 S+GV KIRLTGGEPLLRKDLP+L+A + L G++DIGLTTNG+ L +QAK L AGL+R+ Sbjct: 64 SMGVNKIRLTGGEPLLRKDLPKLIARLAKLEGLKDIGLTTNGIHLAKQAKALKEAGLKRV 123 Query: 132 NISLDALHPEIFGTMNGRGLKPSLILKHIDQAREMGYEIKVNMVVQKGVNESEILPMAAY 191 NISLDA+ +F +NGR + +LK I+ A+E G E+KVNMVV+KG+N+S+ILPMA Y Sbjct: 124 NISLDAIEDRVFQKINGRHVSTKPVLKGIEAAKEAGLEVKVNMVVKKGMNDSQILPMAQY 183 Query: 192 FKERKITLRFIEFMDAGNDNGWSLAKVVTKKEILQSLREVYELEALEQDFYGEVAQRYRY 251 FKE++I LRFIEFMD G+ NGW+ +VVTK+++++ + VY +E ++ ++GEVA+ YRY Sbjct: 184 FKEQEIQLRFIEFMDVGSTNGWNFEQVVTKEQLIEKINRVYPIEPVKPRYFGEVAKLYRY 243 Query: 252 KDSDAEIGFITSVSESFCSSCTRARLSSDGKFYTCLFASGGTDLRSLLRSGADDSSLLNV 311 +DAE+GFITSVSESFCSSCTRAR+S+DGKFYTCLF GTDLRSLLR D+SLL + Sbjct: 244 VGNDAEVGFITSVSESFCSSCTRARISADGKFYTCLFGEKGTDLRSLLRENISDASLLKI 303 Query: 312 IKDVWEKRTDRYSDERQEHTAAGRKKISMSYIGG 345 ++ WE RTDRYSDER + R+K+ MSYIGG Sbjct: 304 LQHTWEFRTDRYSDERTAESTNKRQKVEMSYIGG 337 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,959,690,906 Number of extensions: 80232283 Number of successful extensions: 217566 Number of sequences better than 1.0e-05: 1735 Number of HSP's gapped: 214044 Number of HSP's successfully gapped: 1737 Length of query: 345 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 209 Effective length of database: 1,779,438,163 Effective search space: 371902576067 Effective search space used: 371902576067 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)