BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0358.0005.p (212 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DD37.1 B1DD37_9BACL Transcriptional regulator, TetR family 290 4e-77 C0ZJV9.1 C0ZJV9_BREBN Probable transcriptional regulator 203 7e-51 Q9KBG3.1 Q9KBG3_BACHD Transcriptional regulator (TetR/AcrR family) 191 3e-47 C2X0G9.1 C2X0G9_BACCE Transcription regulator (TetR/AcrR family) 151 3e-35 C2VDW4.1 C2VDW4_BACCE Transcription regulator (TetR/AcrR family) 151 3e-35 >B1DD37.1 B1DD37_9BACL Transcriptional regulator, TetR family Length = 192 Score = 290 bits (743), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 134/188 (71%), Positives = 160/188 (85%) Query: 24 LDTKAKLMHAAIDLMAEKGYKGVSTKEIAATAGVSEMTLFRNFGSKKNLLDKAVDHYHYS 83 LD K KLM AAIDLMAEKGYKGVSTKEIA AGVSEMTLFRNF +K NLLDKAV+H+HYS Sbjct: 4 LDNKVKLMQAAIDLMAEKGYKGVSTKEIATVAGVSEMTLFRNFANKLNLLDKAVEHFHYS 63 Query: 84 IEMTRIFSEKVTWDLRSDLFMISQMYHELMERNRKLYLIVLSDNELTEIRERAQKHPRKL 143 IEM RIF E+V WD+R+DL ++S+MYHELMERNRKL+LIVL+DN+L +IR++AQKHPR L Sbjct: 64 IEMNRIFQEEVVWDIRADLLLVSEMYHELMERNRKLFLIVLADNDLADIRQKAQKHPRIL 123 Query: 144 LELLTNYFIDMQKKSKLVSSDAEMQAITFMWMNYGAFISQLFVKSEITTKPKEDFMRSSV 203 LELL NYF +MQ++ K++ +DAE QAITFMWMNYGAFIS+L+ +T +E F SSV Sbjct: 124 LELLMNYFTEMQRQHKMIDTDAETQAITFMWMNYGAFISRLYTAEAVTKVTREMFAESSV 183 Query: 204 DLFVRALN 211 DLFVRAL+ Sbjct: 184 DLFVRALS 191 >C0ZJV9.1 C0ZJV9_BREBN Probable transcriptional regulator Length = 200 Score = 203 bits (517), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 96/185 (51%), Positives = 134/185 (72%), Gaps = 1/185 (0%) Query: 29 KLMHAAIDLMAEKGYKGVSTKEIAATAGVSEMTLFRNFGSKKNLLDKAVDHYHYSIEMTR 88 KLM AAIDL+AE+GY GV+T+EIA AG+SE TLFR+FGSK+NLL+ A D +HY+ +T+ Sbjct: 16 KLMIAAIDLIAERGYNGVTTQEIATMAGLSEKTLFRHFGSKRNLLESAFDRFHYTEGLTK 75 Query: 89 IFSEKVTWDLRSDLFMISQMYHELMERNRKLYLIVLSDN-ELTEIRERAQKHPRKLLELL 147 +F+EK+TW+LR DL +IS+ YHE+M RNRK+ LI + D L RER QKHP++L+ L Sbjct: 76 LFAEKLTWNLREDLLLISRTYHEMMNRNRKMILISIKDEAHLPGFRERTQKHPQQLMVLF 135 Query: 148 TNYFIDMQKKSKLVSSDAEMQAITFMWMNYGAFISQLFVKSEITTKPKEDFMRSSVDLFV 207 T+YF +M KK K++ ++ E QA FM MN+GAF++ L S + + F+ SV++F Sbjct: 136 TDYFKEMGKKGKMIQTNPEAQATAFMVMNFGAFLNDLDGTSNFSGVSLDAFIEESVEVFA 195 Query: 208 RALNP 212 R L P Sbjct: 196 RGLTP 200 >Q9KBG3.1 Q9KBG3_BACHD Transcriptional regulator (TetR/AcrR family) Length = 196 Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 96/191 (50%), Positives = 128/191 (67%), Gaps = 2/191 (1%) Query: 24 LDTKAKLMHAAIDLMAEKGYKGVSTKEIAATAGVSEMTLFRNFGSKKNLLDKAVDHYHYS 83 T KLM AAIDL++E+GY GV+T EIAA AG SE TLFR+FGSK+NLL++A D +HY Sbjct: 6 FGTSEKLMIAAIDLISERGYNGVTTLEIAAAAGFSEKTLFRHFGSKQNLLEQAFDRFHYG 65 Query: 84 IEMTRIFSEKVTWDLRSDLFMISQMYHELMERNRKLYLIVLSDNE-LTEIRERAQKHPRK 142 EM +F EK+ WDL DL MISQ YH +M RNRK+ I + + + L RER +HP++ Sbjct: 66 EEMKGLFKEKLVWDLHEDLLMISQTYHTIMNRNRKMIQIAIKEGKNLPGFRERTHRHPQQ 125 Query: 143 LLELLTNYFIDMQKKSKLVSSDAEMQAITFMWMNYGAFISQLFV-KSEITTKPKEDFMRS 201 L E LT YF +M KK K++ E A++FM +N+GAFI++L K T E+F+ + Sbjct: 126 LKEFLTTYFSEMIKKRKMIDVHPEHTAVSFMLLNFGAFINELDSDKKRFTNVSLEEFITN 185 Query: 202 SVDLFVRALNP 212 SV +F R L P Sbjct: 186 SVRVFTRGLTP 196 >C2X0G9.1 C2X0G9_BACCE Transcription regulator (TetR/AcrR family) Length = 194 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 72/189 (38%), Positives = 123/189 (65%), Gaps = 1/189 (0%) Query: 25 DTKAKLMHAAIDLMAEKGYKGVSTKEIAATAGVSEMTLFRNFGSKKNLLDKAVDHYHYSI 84 +T +++ A ++L GYKG +T+ I+ AGV+E+T+FRNFGSKKN+++KAV+ + + Sbjct: 6 NTSERIIEAFLELFRTHGYKGTTTRSISELAGVNEVTIFRNFGSKKNIMEKAVESLSHDM 65 Query: 85 EMTRIFSEKVTWDLRSDLFMISQMYHELMERNRKLYLIVLSDNEL-TEIRERAQKHPRKL 143 E+ ++ ++TW+L DL I++ Y +E+ + L LI + E+ E++E+ P++L Sbjct: 66 ELNKLMPGEMTWNLEDDLLSIAEGYLAYIEKLKDLILISFQEAEMFPELKEKIALIPKQL 125 Query: 144 LELLTNYFIDMQKKSKLVSSDAEMQAITFMWMNYGAFISQLFVKSEITTKPKEDFMRSSV 203 + L +YFI+M++K KL+ +D E QA+ F+WMN+G F+S + + KE F++ SV Sbjct: 126 KDNLVSYFIEMREKGKLIETDMEAQAMNFIWMNFGYFLSNSRFGDNLFSNSKETFLKHSV 185 Query: 204 DLFVRALNP 212 LF R L P Sbjct: 186 QLFSRGLTP 194 >C2VDW4.1 C2VDW4_BACCE Transcription regulator (TetR/AcrR family) Length = 194 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 72/189 (38%), Positives = 123/189 (65%), Gaps = 1/189 (0%) Query: 25 DTKAKLMHAAIDLMAEKGYKGVSTKEIAATAGVSEMTLFRNFGSKKNLLDKAVDHYHYSI 84 +T +++ A ++L GYKG +T+ I+ AGV+E+T+FRNFGSKKN+++KAV+ + + Sbjct: 6 NTSERIIEAFLELFRTHGYKGTTTRSISELAGVNEVTIFRNFGSKKNIMEKAVESLSHDM 65 Query: 85 EMTRIFSEKVTWDLRSDLFMISQMYHELMERNRKLYLIVLSDNEL-TEIRERAQKHPRKL 143 E+ ++ ++TW+L DL I++ Y +E+ + L LI + E+ E++E+ P++L Sbjct: 66 ELNKLMPGEMTWNLEDDLLSIAEGYLAYIEKLKDLILISFQEAEMFPELKEKIALIPKQL 125 Query: 144 LELLTNYFIDMQKKSKLVSSDAEMQAITFMWMNYGAFISQLFVKSEITTKPKEDFMRSSV 203 + L +YFI+M++K KL+ +D E QA+ F+WMN+G F+S + + KE F++ SV Sbjct: 126 KDNLVSYFIEMREKGKLIETDMEAQAMNFIWMNFGYFLSNSRFGDNLFSNSKETFLKHSV 185 Query: 204 DLFVRALNP 212 LF R L P Sbjct: 186 QLFSRGLTP 194 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,033,646,820 Number of extensions: 36050086 Number of successful extensions: 139930 Number of sequences better than 1.0e-05: 152 Number of HSP's gapped: 140234 Number of HSP's successfully gapped: 152 Length of query: 212 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 82 Effective length of database: 1,835,964,253 Effective search space: 150549068746 Effective search space used: 150549068746 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)