BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0352.0025.p
         (112 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBN1.1 B3KBN1_9BACI Putative uncharacterized protein                 76   9e-13
B1DDY5.1 B1DDY5_9BACL Putative uncharacterized protein                 55   2e-06

>B3KBN1.1 B3KBN1_9BACI Putative uncharacterized protein
          Length = 95

 Score = 76.3 bits (186), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 25 PHLSFQNGPGWVLGFGVVWCVFAFLVIAAHLHFIIGVDEEKHKQLEAVRRHKLEQWQGKW 84
          P +SF  G  WV  FG VW  FA LVI +HL+++IGVDE K K L+A+R+ KL QW+ KW
Sbjct: 26 PSISFSGGFSWVSLFGAVWAGFALLVIGSHLYYLIGVDEAKQKALDAIRKEKLSQWELKW 85


>B1DDY5.1 B1DDY5_9BACL Putative uncharacterized protein
          Length = 96

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%)

Query: 4  RNKFKHVIXXXXXXXXXXXXXPHLSFQNGPGWVLGFGVVWCVFAFLVIAAHLHFIIGVDE 63
          R K +H+I             P L        V  FGVVW +FA LVIAAHL+ ++ ++E
Sbjct: 2  RGKARHIIYLAVALAMLFYGVPKLDLTGPWNAVTIFGVVWTLFALLVIAAHLNALLWMNE 61

Query: 64 EKHKQLEAVRRHKLEQWQ 81
          +K K+L+ ++R K   W+
Sbjct: 62 QKKKELDRIKRMKRNTWE 79


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.328    0.142    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 632,134,581
Number of extensions: 22474215
Number of successful extensions: 44442
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 44442
Number of HSP's successfully gapped: 2
Length of query: 112
Length of database: 3,060,696,203
Length adjustment: 79
Effective length of query: 33
Effective length of database: 2,316,436,018
Effective search space: 76442388594
Effective search space used: 76442388594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)