BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0352.0023.p
         (114 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBN0.1 B3KBN0_9BACI Putative uncharacterized protein                151   2e-35
O87558.1 YLRP_BACPF UPF0342 protein in lrpR 3'region                   99   9e-20
Q5WHV1.1 Y1519_BACSK UPF0342 protein ABC1519                           90   6e-17
A7GLN2.1 Y695_BACCN UPF0342 protein Bcer98_0695                        77   3e-13
B4AFQ1.1 B4AFQ1_BACPU Putative uncharacterized protein                 74   3e-12

>B3KBN0.1 B3KBN0_9BACI Putative uncharacterized protein
          Length = 115

 Score =  151 bits (381), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 91/114 (79%)

Query: 1   MNVIDKAHELARAIKDSSEVADITSAMRVIEADQESKRMLDNFRQSQIELQQRMMNGXXX 60
           MN+ DKAH+LA+A+K+S EV +ITSAM++++AD ES+RMLD+FRQ Q+ELQQRMM+G   
Sbjct: 1   MNIYDKAHDLAKAMKESQEVEEITSAMKLVDADPESRRMLDDFRQRQMELQQRMMSGDMP 60

Query: 61  XXXXXXXXXXLFEVLNLNLGIRRLFDAERRLSVVIEDVNKIITDSLSQMYGGAQ 114
                      FEVL+LNL IRRLFDAERRLSV+IEDVNKII+DSL  +YG AQ
Sbjct: 61  AQEEMEKMEKQFEVLSLNLNIRRLFDAERRLSVIIEDVNKIISDSLQHLYGQAQ 114


>O87558.1 YLRP_BACPF UPF0342 protein in lrpR 3'region
          Length = 118

 Score = 99.4 bits (246), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 72/113 (63%)

Query: 2   NVIDKAHELARAIKDSSEVADITSAMRVIEADQESKRMLDNFRQSQIELQQRMMNGXXXX 61
           NV DKAHEL +AI +S E + + S    IEAD+ +K+ML+NFR  Q+ELQQ+ M G    
Sbjct: 3   NVYDKAHELKKAIAESEEFSALKSMHEEIEADEIAKKMLENFRNLQLELQQKQMQGIQIT 62

Query: 62  XXXXXXXXXLFEVLNLNLGIRRLFDAERRLSVVIEDVNKIITDSLSQMYGGAQ 114
                     FE++  +  I +L +AE+RLSV+I D+NKIIT+ L ++YG  +
Sbjct: 63  EEEAQKAQQQFELVQQHELISKLMEAEQRLSVIIGDINKIITEPLEEIYGNPE 115


>Q5WHV1.1 Y1519_BACSK UPF0342 protein ABC1519
          Length = 118

 Score = 90.1 bits (222), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 69/110 (62%)

Query: 2   NVIDKAHELARAIKDSSEVADITSAMRVIEADQESKRMLDNFRQSQIELQQRMMNGXXXX 61
           N  DKAHEL  A+ ++ E   +    R I+AD  +K+ML+NFR+ Q++LQQ+ M G    
Sbjct: 3   NAYDKAHELKEALAETQEFKSLYDLHRQIDADDIAKKMLENFRKLQLDLQQKQMQGVQIS 62

Query: 62  XXXXXXXXXLFEVLNLNLGIRRLFDAERRLSVVIEDVNKIITDSLSQMYG 111
                     FE+++ +  I +L DAE+RLSV+I D+NKIIT+ L ++YG
Sbjct: 63  EEEAQQAQQQFELVSQHELISKLMDAEQRLSVIITDLNKIITEPLERIYG 112


>A7GLN2.1 Y695_BACCN UPF0342 protein Bcer98_0695
          Length = 117

 Score = 77.4 bits (189), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 65/113 (57%)

Query: 2   NVIDKAHELARAIKDSSEVADITSAMRVIEADQESKRMLDNFRQSQIELQQRMMNGXXXX 61
           N+ D A+ L +AI D ++   +  +   ++ D +SK++ D FR  Q+E+QQ+MM G    
Sbjct: 4   NIHDVAYGLQKAIADHTDFKTLKESYAKVQGDADSKQLFDTFRNMQLEIQQKMMQGQEIT 63

Query: 62  XXXXXXXXXLFEVLNLNLGIRRLFDAERRLSVVIEDVNKIITDSLSQMYGGAQ 114
                    + +++  N  I++L +AE+RL+VVI D+NKII   L ++Y   Q
Sbjct: 64  EEDNKKAQEVIDLIQQNEHIKKLMEAEQRLNVVIGDINKIIMKPLEELYSAYQ 116


>B4AFQ1.1 B4AFQ1_BACPU Putative uncharacterized protein
          Length = 118

 Score = 74.3 bits (181), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 65/114 (57%)

Query: 1   MNVIDKAHELARAIKDSSEVADITSAMRVIEADQESKRMLDNFRQSQIELQQRMMNGXXX 60
           +NV D A++L +A++ S E + + +    + AD+ SKRM DNFR  Q+ LQQ+ M G   
Sbjct: 3   VNVYDVAYDLEKALRHSEEYSTLKNLYDEVNADESSKRMFDNFRDIQVNLQQKQMTGQEI 62

Query: 61  XXXXXXXXXXLFEVLNLNLGIRRLFDAERRLSVVIEDVNKIITDSLSQMYGGAQ 114
                        ++  +  I +L +AE+R+SV+I ++NK+I   L ++YG  +
Sbjct: 63  TQEEVEQAQKTVALVQQHDKISQLMEAEQRVSVLIGELNKVIMKPLEELYGNPE 116


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.133    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 442,844,187
Number of extensions: 11046315
Number of successful extensions: 44065
Number of sequences better than 1.0e-05: 161
Number of HSP's gapped: 43996
Number of HSP's successfully gapped: 161
Length of query: 114
Length of database: 3,060,696,203
Length adjustment: 81
Effective length of query: 33
Effective length of database: 2,297,593,988
Effective search space: 75820601604
Effective search space used: 75820601604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)