BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0352.0020.p (393 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBM7.1 B3KBM7_9BACI Putative uncharacterized protein 254 7e-66 B1DDY7.1 B1DDY7_9BACL YheC 216 3e-54 A9U6Q3.1 A9U6Q3_PHYPA Predicted protein 189 3e-46 C0Z7V3.1 C0Z7V3_BREBN Putative uncharacterized protein 186 4e-45 C0ZCK7.1 C0ZCK7_BREBN Putative uncharacterized protein 148 7e-34 >B3KBM7.1 B3KBM7_9BACI Putative uncharacterized protein Length = 378 Score = 254 bits (650), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 200/368 (54%), Gaps = 14/368 (3%) Query: 1 MTETAMGFLGIMISRGHGNPPIAEREFCSQLCRAAPLYNLQVIVFCPD------GVAGDG 54 M+ +G LG+M R G PP AE++F +L + +QV VFCPD G Sbjct: 1 MSSKIIGTLGVMACRKPGFPPFAEKQFLRELSLKSEGLGMQVFVFCPDDASPASGADSAA 60 Query: 55 RTVSGYAWENGE-WKPARASAPDVLYNRCLNTGPQEKKXXXXXXXXXXX--XXPWSRGLP 111 + GY + E W PD++Y+RCL+ +E WSRGLP Sbjct: 61 DRIKGYRFNPEEGWSTGNFPLPDIVYDRCLHRNGEETAAAGELLNRMSQLGVKLWSRGLP 120 Query: 112 DKWRVYEILRRSRRAAGLLPETRLYKNSRELGTMLAERDAGVFLKPRAGSHGKRTLHAVR 171 K +V+++L+RS LP T Y + L L +F+KP GS G+ TL+ Sbjct: 121 GKQKVHQLLKRSSAIKPYLPATLSYTGAESLSRALLAFGGRLFMKPSGGSQGRHTLYLAL 180 Query: 172 LPRSQGGGINLRGRDGANHPFHHVFGTVDEGLGWIHDFIGLRRYIIQPYLQLTDSRGQPF 231 + + + L+GRD +N F H V E W+ F G RR+IIQP+L+L + G P+ Sbjct: 181 TDQQR---VRLQGRDRSNRMFLHTI-PVHEMNEWVRGFTGRRRFIIQPFLKLRNGNGHPY 236 Query: 232 DVRVLMQKNGRGVWMLTGMAVRLGSRGSLTSNLHGGGTAVAPLPFLLAXXXXXXXXXXXX 291 D+R L+QKN RG+W +TG+AVR G+ LTSNLHGGGTA LP+L Sbjct: 237 DIRSLVQKNDRGIWSVTGIAVRQGADQGLTSNLHGGGTAFPALPYLTTDFGEEKATGIMR 296 Query: 292 XXXXXXXXSP-LLEEACGRLGELGLDFGLDSAGRIFLLEANSKPGRTVFRLTGDRRAARL 350 P LLEE GRLGELG+DFG+D++GR+++LE NSKPGR F LTGD AARL Sbjct: 297 TIRDLSAQLPALLEEGFGRLGELGIDFGVDTSGRVWILEVNSKPGRRAFTLTGDGHAARL 356 Query: 351 AAENPLRY 358 + E+P++Y Sbjct: 357 SVEHPIQY 364 >B1DDY7.1 B1DDY7_9BACL YheC Length = 413 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 133/345 (38%), Positives = 171/345 (49%), Gaps = 6/345 (1%) Query: 22 IAEREFCSQLCRAAPLYNLQVIVFCPDGVAGDGRTVSGYAWENGEWKPARASAPDVLYNR 81 + E F L AA + + VF P ++ + +G W PD+LY+R Sbjct: 34 LPEPAFAQMLSEAAGRLAIDLYVFSPAEYEEKTGQLTAFRLRHGSWVKEPCPLPDILYDR 93 Query: 82 CLNTGPQEKKXXXXXXXXXXXXXPWSR---GLPDKWRVYEILRRSRRAAGLLPETRLYKN 138 C +E+ P + LP KW VY LR+ A LLP T Sbjct: 94 CFYRTAEERMLCKAVLAAIREQKPVTTLNGSLPGKWEVYSTLRQDSLLAPLLPSTTRLDR 153 Query: 139 SRELGTMLAERDAGVFLKPRAGSHGKRTLHAVRLPRSQGGGINLRGRDGANHPFHHVFGT 198 L +L +FLKP AG GK +H + P ++ GR G+N PF H F Sbjct: 154 PDTLLRLLKSNGEELFLKPSAGMQGKGAIHLKQFPLTREWIAA--GRTGSNLPFRHRFKH 211 Query: 199 VDEGLGWIHDFIGLRRYIIQPYLQLTDSRGQPFDVRVLMQKNGRGVWMLTGMAVRLGSRG 258 WI F+G YI QPYLQLTD G PFD+RVL+QKNG+G W +TG AVR GS G Sbjct: 212 YSSLSIWISRFMGNASYIAQPYLQLTDPDGNPFDLRVLVQKNGKGRWGVTGAAVRAGSSG 271 Query: 259 SLTSNLHGGGTAVAPLPFLLAXX-XXXXXXXXXXXXXXXXXXSPLLEEACGRLGELGLDF 317 ++TSNLHGGGTA P +L + LE GRL ELG+DF Sbjct: 272 TVTSNLHGGGTASPPSHYLSRLFGEAKAERIMNKIIDASLQAAEKLENNYGRLAELGIDF 331 Query: 318 GLDSAGRIFLLEANSKPGRTVFRLTGDRRAARLAAENPLRYTRHL 362 G++ GRI+LLE NS+PGR+ FR +GD +A R + E PLRY R L Sbjct: 332 GIEPDGRIWLLEVNSRPGRSSFRQSGDNQAERRSVELPLRYARLL 376 >A9U6Q3.1 A9U6Q3_PHYPA Predicted protein Length = 360 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 132/336 (39%), Positives = 167/336 (49%), Gaps = 19/336 (5%) Query: 38 YNLQVIVFCPDGVAGDGRTVS-GYAWENGEWKPARASAPDVLYNRCLNTGPQEKKXXXXX 96 Y+LQVIV P V D + GYA++ G+WK A D++ +RCL P+ + Sbjct: 3 YDLQVIVI-PISVDADPYPLQRGYAYDQGKWKVVPIPALDLIMDRCLRPLPRSVRQQIEK 61 Query: 97 XXXXXXXXP---WSRGLPDKWRVYEILRRSRRA-AGLLPETRLYKNSRELGTMLAERDAG 152 WS LP KW V+ +L R+ A L P TR+ + T L G Sbjct: 62 KVSANGAYKHRYWSASLPGKWEVHRVLSRNAELRARLAPTTRIGLHI-PWETWLEHWPMG 120 Query: 153 VFLKPRAGSHGKRTLHAVRLPRSQGGGIN----LRGRDGANHPFHHVFGTVDEGLGWIHD 208 +F KP +G+HGK T RL R G I + GR+ N F+ F W+ Sbjct: 121 LFFKPLSGTHGKNTF---RLSR---GAIPSTWIVEGRNANNEHFYLTFNHTQAVSSWLEL 174 Query: 209 FIGLRRYIIQPYLQLTDSRGQPFDVRVLMQKNGRGVWMLTGMAVRLGSRGSLTSNLHGGG 268 R+ I+QPYL L+ G+ FD+R LMQKNG+G W LTG VR G GSLTSNLHGGG Sbjct: 175 HQSERKMIVQPYLDLSH-HGRAFDIRALMQKNGQGRWTLTGCMVREGPEGSLTSNLHGGG 233 Query: 269 TAVAPLPFLLAXXXXXXXXXXXXXXXXXXXXSP-LLEEACGRLGELGLDFGLDSAGRIFL 327 A +LL P LLE GRL ELGLDFG D+ G+++L Sbjct: 234 RAYPAEAYLLQRYGTVRTEALLKSLQQTAALIPTLLESRFGRLAELGLDFGADAEGQLWL 293 Query: 328 LEANSKPGRTVFRLTGDRRAARLAAENPLRYTRHLL 363 +E NSKPGRT F GDR L PL Y R+LL Sbjct: 294 IEVNSKPGRTSFAEAGDRHMHALTYTRPLAYARYLL 329 >C0Z7V3.1 C0Z7V3_BREBN Putative uncharacterized protein Length = 362 Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 125/364 (34%), Positives = 178/364 (48%), Gaps = 12/364 (3%) Query: 9 LGIMISRGHGNPPIAEREFCSQLCRAAPLYNLQVIVFCPDGVAGDGRTVSGYAWENGEWK 68 LGIM +R G+ ++ + +L + ++V VF P V R V G+ + NG W Sbjct: 8 LGIM-ARCQGSH-FVDKGYYKKLTLYGRKHGIRVFVFSPRQVNFSTRMVKGFEYRNGSWH 65 Query: 69 PARASAPDVLYNRCLNTGPQEK--KXXXXXXXXXXXXXPWSRGLPDKWRVYEILRRSRRA 126 P +Y+RC GP + K GL KW+V+++L +S Sbjct: 66 AKEFPIPAFIYDRCF-VGPSYRHYKPFVEKLQNDRNITFLGHGLSGKWQVHQMLAKSPLL 124 Query: 127 AGLLPETRLYKNSRELGTMLAERDAGVFLKPRAGSHGKRTLHAVRLPRSQGGGINLRGRD 186 A LLP T ++ T+ E+ +KP AG+HG + VR+ + G GR+ Sbjct: 125 APLLPPTEIFSYPVLQATL--EKYGAAIIKPMAGTHG---IGVVRIKEVRSG-YEASGRN 178 Query: 187 GANHPFHHVFGTVDEGLGWIHDFIGLRRYIIQPYLQLTDSRGQPFDVRVLMQKNGRGVWM 246 N PF ++ F R++++QPYL+L G PFDVRVL+QKNG G W Sbjct: 179 RDNQPFTRRIRDTAGLKSFVSVFTAGRKFLVQPYLELHTPDGTPFDVRVLVQKNGLGKWA 238 Query: 247 LTGMAVRLGSRGSLTSNLHGGGTAVAPLPFLLAXXXXXXXXXXXXXXXXXXXXSP-LLEE 305 TG AVRLG + S+TSNLHGGG A FL P LEE Sbjct: 239 TTGKAVRLGDKRSITSNLHGGGKATPLASFLPLHFKSAKAARIEQSINRVAEELPRFLEE 298 Query: 306 ACGRLGELGLDFGLDSAGRIFLLEANSKPGRTVFRLTGDRRAARLAAENPLRYTRHLLLT 365 + GRL ELG+D G+D+AG ++++E NS+PGRTVFR+ D A + P+RY +L+ Sbjct: 299 SHGRLVELGIDIGIDTAGNVWIIEVNSRPGRTVFRMIDDPTAQLHSITQPVRYAHYLMKE 358 Query: 366 SAAG 369 G Sbjct: 359 RVGG 362 >C0ZCK7.1 C0ZCK7_BREBN Putative uncharacterized protein Length = 364 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 109/347 (31%), Positives = 157/347 (45%), Gaps = 9/347 (2%) Query: 22 IAEREFCSQLCRAAPLYNLQVIVFCPDGVAGDGRTVSGYA-WENGEWKPARASAPDVLYN 80 AE+ + +L +A +F P+ V G G+ V GY NG W+ PD +++ Sbjct: 9 FAEQTYFRRLLKAGQELGCTAFLFSPNDVLGSGKQVRGYVPGSNGGWQARIFDRPDAVFD 68 Query: 81 RCLNTGPQEKKXXXXXXXXXXXXXPWSRGLPDKWRVYEILRRSRRAAGLLPETRLYKNSR 140 R T Q K +R L +KWRV+E+L R R LPET LY N + Sbjct: 69 RYRYTPTQAFKNYVAFRRTSNFLYANNR-LANKWRVHEVLHRDPRMHRWLPETHLY-NRQ 126 Query: 141 ELGTMLAERDAGVFLKPRAGSHGKRTLHAVRLPRSQGGGINLRGRDGANHPFHHVFGTVD 200 L ML + +++KP G+ G+ L + +G + L GR+ V Sbjct: 127 SLVNMLGKHPL-LYVKPLNGTGGRNILSIEK----RGDELRLLGRNKQRAKVSTVVRDKA 181 Query: 201 EGLGWIHDFIGLRRYIIQPYLQLTDSRGQPFDVRVLMQKNGRGVWMLTGMAVRLGSRGSL 260 W+ + +YI+Q L+L + D+R+L+QKNG G W +TG +R+G S Sbjct: 182 AAQRWVDRWTRQEKYIVQQGLRLQLVPSRAVDMRLLIQKNGEGEWSITGHGIRVGPERSA 241 Query: 261 TSNLHGGGTAVAPLPFLLAXX-XXXXXXXXXXXXXXXXXXSPLLEEACGRLGELGLDFGL 319 TSNLHGGG A+ FL + LE+ GR+ E GLD G+ Sbjct: 242 TSNLHGGGRAIPVSVFLRPRFGEERTAQIVHDCEQLAFQTAETLEDHFGRMVEFGLDIGI 301 Query: 320 DSAGRIFLLEANSKPGRTVFRLTGDRRAARLAAENPLRYTRHLLLTS 366 D GR +L+E N KP R +FR G + A PL Y +L T Sbjct: 302 DVDGRAWLIEVNPKPAREIFREMGATGQYKNAITRPLEYAIYLAKTQ 348 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.140 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,346,093,668 Number of extensions: 96846997 Number of successful extensions: 175032 Number of sequences better than 1.0e-05: 195 Number of HSP's gapped: 174596 Number of HSP's successfully gapped: 199 Length of query: 393 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 255 Effective length of database: 1,760,596,133 Effective search space: 448952013915 Effective search space used: 448952013915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)