BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0352.0018.p (359 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBM5.1 B3KBM5_9BACI Putative uncharacterized protein 457 e-127 A9U6Q2.1 A9U6Q2_PHYPA Predicted protein 452 e-125 B1DDY9.1 B1DDY9_9BACL YheD 417 e-115 C0Z7V1.1 C0Z7V1_BREBN Putative uncharacterized protein 280 1e-73 C1PY99.1 C1PY99_ALIAC Putative uncharacterized protein 198 6e-49 >B3KBM5.1 B3KBM5_9BACI Putative uncharacterized protein Length = 368 Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/358 (61%), Positives = 272/358 (75%), Gaps = 1/358 (0%) Query: 1 VIAILTTSDKLRQFRGNRENFRDIIRTGKEMGYLVYVVTVRDLKLDEPVINGYVPSSNGR 60 V+AILT D FRGNR+NF++II+TGK+MG+LVYVVTVRDLKLD + GY+ S+ Sbjct: 12 VVAILTMHDTQTMFRGNRQNFQEIIKTGKDMGFLVYVVTVRDLKLDTDAVKGYMLLSDHS 71 Query: 61 IWYSTPMPLPQVVYNRIPNREEEERASVARKIAECLEHPEIHLYNPNFFNKWNLFEWLKE 120 W PLPQV+YNRIP RE+E V RKI EC HP I LYNP+FFNKW LF WL + Sbjct: 72 -WEQRLCPLPQVIYNRIPYREDEALPWVRRKIKECQRHPHIDLYNPHFFNKWRLFAWLNK 130 Query: 121 SRATSKHVPKTRRLRSASTLVAMLKNHDSLYLKPENGKAGKGIMRLKYRLDANLPYRLQI 180 SR T + P T+RL+ TL M+K LYLKPE+GKAG+GIMR++Y+ + +LPYR+QI Sbjct: 131 SRLTKQWTPLTKRLKGYPTLYEMMKRKPYLYLKPEDGKAGQGIMRIRYQKNKSLPYRIQI 190 Query: 181 QSGKKNVTYKAASLDRVWARIGKERGASRYIVQQAIELAAHHGRPFDLRVLLQKNGKGAW 240 Q+ K + TYKAASL+R+W+R+ +E S Y++QQ IELA HGR FDLR+L+QKN G+W Sbjct: 191 QNNKNSTTYKAASLERLWSRVYQETKGSSYLIQQGIELAQVHGRSFDLRILVQKNDSGSW 250 Query: 241 AVTGIGARLAGARSITTHVPRGGSIEEPASMLEGTFGAERAAAILKSVPMTALLIARQIE 300 AVTGIGAR+AGA+SITTHVPRGG+IE+P +L FG ER+ AIL V A+ +ARQIE Sbjct: 251 AVTGIGARMAGAKSITTHVPRGGTIEDPEKLLPIVFGPERSDAILGEVRKAAVHMARQIE 310 Query: 301 RASGTMLGEMSMDLGVDEEGGLWFFEANSRPMKFDEPAIRKLSLERIFQFSQHLSRHR 358 + SG + GEMSMDLG+D EG LWFFEANSRPMKFDEPAIRK SLERIFQ+S +L + + Sbjct: 311 KCSGQIHGEMSMDLGIDNEGILWFFEANSRPMKFDEPAIRKKSLERIFQYSDYLIKQK 368 >A9U6Q2.1 A9U6Q2_PHYPA Predicted protein Length = 353 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 212/351 (60%), Positives = 270/351 (76%), Gaps = 1/351 (0%) Query: 9 DKLRQFRGNRENFRDIIRTGKEMGYLVYVVTVRDLKLDEPVINGYVPSSNGRIWYSTPMP 68 D R FRGN +NF+DI++TG+ MGY+VYVVTVRDL + P + GY + W S P Sbjct: 3 DNQRMFRGNHQNFQDIVQTGESMGYVVYVVTVRDLDVSGPTVKGYTYNKGSGKWVSQLFP 62 Query: 69 LPQVVYNRIPNREEEERASVARKIAECLEHPEIHLYNPNFFNKWNLFEWLKESRATSKHV 128 LP V+YNRIPNRE+E + SV RKI EC++ I LYNP FFNKWNLFEWLK+S++T + + Sbjct: 63 LPHVLYNRIPNREDEGKPSVQRKIDECMQSG-IELYNPFFFNKWNLFEWLKKSKSTQQLI 121 Query: 129 PKTRRLRSASTLVAMLKNHDSLYLKPENGKAGKGIMRLKYRLDANLPYRLQIQSGKKNVT 188 P TRR+RSAS+L A+L+ + LYLKPE+GKAGKGIM LK++ LPYRL+IQ+ +KN T Sbjct: 122 PYTRRMRSASSLGAVLRTYPYLYLKPESGKAGKGIMMLKFQEKERLPYRLKIQTTRKNTT 181 Query: 189 YKAASLDRVWARIGKERGASRYIVQQAIELAAHHGRPFDLRVLLQKNGKGAWAVTGIGAR 248 YK A+L ++WARI KE G + YI+QQ IELA+ RPFDLRVL+QKN KG W+V+G+GAR Sbjct: 182 YKTATLAKLWARIRKETGRTPYIMQQGIELASSRKRPFDLRVLVQKNSKGQWSVSGVGAR 241 Query: 249 LAGARSITTHVPRGGSIEEPASMLEGTFGAERAAAILKSVPMTALLIARQIERASGTMLG 308 LAG+RSITTHVPRGGS+E+P +L FG E ++K V T+L+IARQ+ER SG LG Sbjct: 242 LAGSRSITTHVPRGGSVEDPEKLLTELFGEEMTTTLMKRVKSTSLMIARQVERGSGYTLG 301 Query: 309 EMSMDLGVDEEGGLWFFEANSRPMKFDEPAIRKLSLERIFQFSQHLSRHRK 359 EMSMDLG+D+ G +WFFEAN++PMKFDEP IR+ SLERIF +S +L+R K Sbjct: 302 EMSMDLGIDDLGEIWFFEANAKPMKFDEPQIRRRSLERIFHYSAYLARQSK 352 >B1DDY9.1 B1DDY9_9BACL YheD Length = 387 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 196/358 (54%), Positives = 260/358 (72%) Query: 1 VIAILTTSDKLRQFRGNRENFRDIIRTGKEMGYLVYVVTVRDLKLDEPVINGYVPSSNGR 60 V+AILT + + FRGNR NF DII+TG+E G+LVYV+TV++L L+ + G+V Sbjct: 20 VLAILTIENDEQFFRGNRNNFADIIKTGQEKGFLVYVLTVKNLVLNRSSLRGFVYIEQKD 79 Query: 61 IWYSTPMPLPQVVYNRIPNREEEERASVARKIAECLEHPEIHLYNPNFFNKWNLFEWLKE 120 W +P P ++YNRIP RE+E +V KIA C+ P I L+NP+FFNKW LFEWL+ Sbjct: 80 TWQQRLLPFPDIIYNRIPQREDEMLPAVRNKIAACMRDPRIKLFNPSFFNKWYLFEWLRG 139 Query: 121 SRATSKHVPKTRRLRSASTLVAMLKNHDSLYLKPENGKAGKGIMRLKYRLDANLPYRLQI 180 S++T +P TR+L +A+ L ML+ H LYLKPE+GKAGKGIM +K + D LPY L++ Sbjct: 140 SKSTKPFIPATRKLLTAARLERMLQKHPFLYLKPESGKAGKGIMTVKVQPDKPLPYLLKV 199 Query: 181 QSGKKNVTYKAASLDRVWARIGKERGASRYIVQQAIELAAHHGRPFDLRVLLQKNGKGAW 240 Q KK+ T+ A ++W RI KE G+ YI QQ I+LA+ + R FDLR L+QKN +G W Sbjct: 200 QENKKSSTFSCADFQKLWNRIKKECGSEPYIAQQGIQLASFNDRQFDLRALVQKNERGKW 259 Query: 241 AVTGIGARLAGARSITTHVPRGGSIEEPASMLEGTFGAERAAAILKSVPMTALLIARQIE 300 +TGIGAR+AG+ SITTHVPRGGSIE+P +L+ +F A++A IL T+++IARQIE Sbjct: 260 DLTGIGARVAGSSSITTHVPRGGSIEDPEKLLKSSFNADQARRILIKAKQTSIMIARQIE 319 Query: 301 RASGTMLGEMSMDLGVDEEGGLWFFEANSRPMKFDEPAIRKLSLERIFQFSQHLSRHR 358 + SG MLGEMSMDLG+D +G +WFFEANS+PMKFDEP IR+ SLERIFQ+S +L+R R Sbjct: 320 KGSGFMLGEMSMDLGIDSQGHIWFFEANSKPMKFDEPHIRQKSLERIFQYSTYLARMR 377 >C0Z7V1.1 C0Z7V1_BREBN Putative uncharacterized protein Length = 435 Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 148/355 (41%), Positives = 219/355 (61%), Gaps = 6/355 (1%) Query: 1 VIAILTTSDKLRQFRGNRENFRDIIRTGKEMGYLVYVVTVRDLKLDEPVINGYVPSSNGR 60 + ILT + F GNRENF+DI ++GK+ G LVYV T + + ++ + GY+ ++ Sbjct: 76 LFGILTVGEGA-TFLGNRENFKDISQSGKQWGALVYVFTPQGINWEKKKVRGYLYNNRLN 134 Query: 61 IWYSTPMPLPQVVYNRIPNREEEERASVARKIAECLEHPEIHLYNPNFFNKWNLFEWLKE 120 W +P P VVYNRIP R+ E R V R + E P + L+N +FF+K LF L+ Sbjct: 135 SWQEVILPFPHVVYNRIPTRKAERRPEVRRTLNRIHEMPNVTLFNRSFFDKQQLFTMLES 194 Query: 121 SRATSKHVPKTRRLRSASTLVAMLKNHDSLYLKPENGKAGKGIMRLKYRLDANLPYRLQI 180 +P+T++L + + + H +YLKP GKAG+GIMR+ ++ D + LQ Sbjct: 195 HLEVQAFLPETKQLDTLARFRSFCTEHRFVYLKPVRGKAGQGIMRIDFKNDK---WFLQR 251 Query: 181 QSGKKNVTYKAASLDRVWARIGKERGASRYIVQQAIELAAHHGRPFDLRVLLQKNGKGAW 240 K +T + ++L+ VW I +YI+QQ I A ++G+PFD+RVL+QK+G+G W Sbjct: 252 LKEHKAITRRFSNLNDVWRHIRLHVKQQKYIMQQGIRRARYNGKPFDVRVLVQKDGEGEW 311 Query: 241 AVTGIGARLAGARSITTHVPRGGSIEEPASMLEGTFGAERAAAILKSVPMTALLIARQIE 300 ++TG G R AG++SITTHVPRGGSI +++++ F + + + TAL IAR + Sbjct: 312 SITGAGIRRAGSQSITTHVPRGGSIHSLSTVMQALF-HNNHEQMERHIHDTALAIARSLN 370 Query: 301 RASGTMLGEMSMDLGVDEEGGLWFFEANSRPMKFDEPAIRKLSLERIFQFSQHLS 355 A T L EMSMDLG+ EEG LW FEAN++P KFDEP+IR+LSL + ++QH+S Sbjct: 371 -AEWTDLAEMSMDLGLTEEGKLWLFEANAKPEKFDEPSIRQLSLANLIHYAQHVS 424 >C1PY99.1 C1PY99_ALIAC Putative uncharacterized protein Length = 374 Score = 198 bits (504), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 126/353 (35%), Positives = 194/353 (54%), Gaps = 13/353 (3%) Query: 5 LTTSDKLRQFRGNRENFRDIIRTGKEMGYLVYVVTVRDLKLDEPVINGYVPSSNGRIWYS 64 + T++ F G+R FRDII G++ G+LVYV+T + + GYV R W Sbjct: 29 ILTAEHPSGFAGSRRYFRDIIAAGQKRGFLVYVITPPSVS-EGSFWQGYV-RLGYRNWKP 86 Query: 65 TPMPLPQVVYNRIPNREEEERASVARKIAECLEHPEIHLYNPNFFNKWNLFEWLKESRAT 124 +P P VYNRIPNR E A+V R A L+ I +N +FNK ++E ++ + Sbjct: 87 MWLPRPLAVYNRIPNRALEASAAVQRARA-TLQAMGIPFFNHRYFNKAKIYEAVRRA-GL 144 Query: 125 SKHVPKTRRLRSASTLVAMLKNHDSLYLKPENGKAGKGIMRLKYRLDANLPYRLQIQSGK 184 +H+P+TR A +++ +L H ++YLKP G G+GI+R++ R DA + + + + Sbjct: 145 GQHLPETRMFTGAESVMDLLSRHQAVYLKPVGGSIGRGIVRVERRGDAFDVWAQRAERAE 204 Query: 185 KNVTYKAASLDRVWARIGKERGASRYIVQQAIELAAHHGRPFDLRVLLQKNGKGAWAVTG 244 + LD + + R Y+ Q A+ + GRP D RVLLQ+ G +W V G Sbjct: 205 HWAIHDLRELDEA---LRRARLPGAYVAQAAVPVIRFDGRPCDARVLLQRPG-ASWQVVG 260 Query: 245 IGARLAGARSITTHVPRGGSIEEPASMLEGTFGA--ERAAAILKSVPMTALLIARQIERA 302 G R++G SIT+HVP GG I + ++L FG+ E A L S +A A IER+ Sbjct: 261 YGIRVSGEESITSHVPNGGHIADRWTVLRQVFGSCSEDVDARLVSFTRSA---AAAIERS 317 Query: 303 SGTMLGEMSMDLGVDEEGGLWFFEANSRPMKFDEPAIRKLSLERIFQFSQHLS 355 + EMS+D+G+DE G W FEAN++PM+FDEP I + + + + ++L+ Sbjct: 318 MPGHVREMSIDVGIDEAGHPWLFEANAKPMRFDEPDIARRASAGVIEILRNLA 370 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,164,543,733 Number of extensions: 91132761 Number of successful extensions: 209176 Number of sequences better than 1.0e-05: 225 Number of HSP's gapped: 208703 Number of HSP's successfully gapped: 228 Length of query: 359 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 222 Effective length of database: 1,770,017,148 Effective search space: 392943806856 Effective search space used: 392943806856 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)