BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0352.0013.p
         (252 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D984.1 B1D984_9BACL Putative uncharacterized protein                 78   7e-13
B3KBA9.1 B3KBA9_9BACI Putative uncharacterized protein                 78   7e-13

>B1D984.1 B1D984_9BACL Putative uncharacterized protein
          Length = 291

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 117 DGYSLYVFEDFTLDAQSGRLSLTKDPAYYADIEHLAAGYDLAALKQQGQTELSAMGKVSD 176
           DGY+LY+FE F  DA + +L +  D  YY +I  L  G+ L  +K   + EL ++G V  
Sbjct: 165 DGYALYIFEQFKFDAAANKLIMNVDNDYYIEISKLPEGFKLDDVKADAEKELKSVGDVQS 224

Query: 177 HSGELFEHPLGFADLYLQAAGDKGIEDYMVWKNQAGEAFLFRIHNPKGELSNKFVPWVMV 236
              +  +  +G  DL L+AA +K  ++ +V K   G +FLF+++ P GE +  F P    
Sbjct: 225 IDQKDSKSMIGDVDLMLKAASNKLTKEVIV-KTVDGTSFLFKVNQPVGEPTEGFGPLAFT 283

Query: 237 SLATL 241
           S+ ++
Sbjct: 284 SMGSI 288


>B3KBA9.1 B3KBA9_9BACI Putative uncharacterized protein
          Length = 285

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 117 DGYSLYVFEDFTLDAQSGRLSLTKDPAYYADIEHLAAGYDLAALKQQGQTELSAMGKVSD 176
           DGY+LY+F+ F+ DA++ RL++  D  YYA+I  L + Y+   LK + + EL+ +GKV +
Sbjct: 159 DGYALYIFDIFSFDAKTNRLTMNVDQDYYAEITKLPSDYNADILKLEAEKELAEVGKVHE 218

Query: 177 HSGELFEHPLGFADLYLQAAGDKGIEDYMVWKNQAGEAFLFRIHNPKGELSNKFVPWVMV 236
             G      +  A +Y+   G+ G+    +     G+ ++FR++NP  E S  F      
Sbjct: 219 VEGSERHKVMKDASVYMIGEGE-GLTKMYIVDEFDGQGYIFRVNNPHREPSEGFATHAFT 277

Query: 237 SLATLEN 243
           SL+++ N
Sbjct: 278 SLSSIVN 284


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,097,129,443
Number of extensions: 35354676
Number of successful extensions: 70178
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 70176
Number of HSP's successfully gapped: 2
Length of query: 252
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 120
Effective length of database: 1,817,122,223
Effective search space: 218054666760
Effective search space used: 218054666760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)