BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0352.0010.p (279 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7JP27.1 B7JP27_BACC0 Recombinase 212 2e-53 C3AP99.1 C3AP99_BACMY Recombinase 185 4e-45 A8MGG9.1 A8MGG9_ALKOO Recombinase 184 7e-45 C2N4Y7.1 C2N4Y7_BACCE Recombinase 172 3e-41 B7IUF9.1 B7IUF9_BACC2 Recombinase 172 3e-41 >B7JP27.1 B7JP27_BACC0 Recombinase Length = 517 Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 116/284 (40%), Positives = 169/284 (59%), Gaps = 10/284 (3%) Query: 1 VYIGRIQWGKKEVKKSKDGXXXXXXXXXXXAEWIDVHGKHQPIIDSETFLKAKRRLSEHH 60 VY G++ W KKE+KKS +EWI V GKH II E F KA+ L + Sbjct: 237 VYSGKVTWKKKEIKKSITPGKVKDTRTRDESEWIIVDGKHDAIISEELFEKAQSILKGRY 296 Query: 61 HSPHQYNMDGKPRMTSALAGLVKCSECGRTMVYRPYTRQPAHFRC-STAGCSTRSSRYDT 119 H P+Q +G + SALAG++KC++CG +MVYRPYT Q +C + C +SS Y+ Sbjct: 297 HVPYQLT-NG---VRSALAGIIKCAKCGASMVYRPYTTQKPALKCYNQTRCHNKSSNYEL 352 Query: 120 VEARIIEGLELWLSGYKIKWGKRNHP----APHNGLRLKERALASLQNELKELENQRGKL 175 VE RI+EG+ WL YK + + N P + N + + + L +L+ EL E E Q+ L Sbjct: 353 VERRILEGIAEWLEVYKANF-EMNSPQEETSEMNQINVYRQMLKNLEKELAETEKQKENL 411 Query: 176 FDFLERGIYTEEIFKERSQDISKRITAAAEGINKVQKDLDLELARKEAGSMVIPLAESVV 235 FDFLER IYTE++F RS+ ++ + + I+ +++ +D EL R++A +IP E V+ Sbjct: 412 FDFLERKIYTEDVFLSRSKTLAVKTEKLQQDIDTIKESIDNELQREQAQDNIIPQVERVL 471 Query: 236 KSYYQTDNPISRNALLKSVLNKVVYKKGPGQHKEQFEIFLYPRL 279 Y +TD+P +N+LLKSVL K VY K Q+K+ F + LYP+L Sbjct: 472 DLYDKTDDPKKKNSLLKSVLEKAVYNKEKHQYKDDFSLTLYPKL 515 >C3AP99.1 C3AP99_BACMY Recombinase Length = 515 Score = 185 bits (469), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 156/282 (55%), Gaps = 9/282 (3%) Query: 1 VYIGRIQWGKKEVKKSKDGXXXXXXXXXXXAEWIDVHGKHQPIIDSETFLKAKRRLSEHH 60 +YIG++ W K++ K D +EWI GKH PII F KA+ +L+ + Sbjct: 234 IYIGKVTWQKRKEVKRPDATKRSCARQDK-SEWIIADGKHDPIISKSLFEKAQEKLNTRY 292 Query: 61 HSPHQYNMDGKPRMTSALAGLVKCSECGRTMVYRPYTRQPAHFRCSTAGCSTRSSRYDTV 120 H P YN +G + + LAG+++C +CG +MV R + C GC +SS + + Sbjct: 293 HVP--YNTNG---LKNPLAGIIRCGKCGYSMVQRYPKNRKKTMDCKHRGCENKSSYTELI 347 Query: 121 EARIIEGLELWLSGYKIKWGKRNHPA---PHNGLRLKERALASLQNELKELENQRGKLFD 177 E R++E L+ W YK + K N + +++ + AL L+ EL +++ Q+ L D Sbjct: 348 ERRLLEALKEWYINYKADFAKNNQDSLSKEKQVIKINQAALRKLEKELLDVQKQKNNLHD 407 Query: 178 FLERGIYTEEIFKERSQDISKRITAAAEGINKVQKDLDLELARKEAGSMVIPLAESVVKS 237 LERG+YT ++F ERS +S R+ E + +QK+++ E+ ++ IP E V+ Sbjct: 408 LLERGVYTVDMFLERSNVVSDRMNEITEMMENLQKEINTEIKKERVKKDTIPQVEHVLDL 467 Query: 238 YYQTDNPISRNALLKSVLNKVVYKKGPGQHKEQFEIFLYPRL 279 Y++TD+P +N+LLKSVL K VY K Q + F++ LYPRL Sbjct: 468 YFKTDDPKKKNSLLKSVLEKAVYTKEKWQRLDDFKLVLYPRL 509 >A8MGG9.1 A8MGG9_ALKOO Recombinase Length = 518 Score = 184 bits (467), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 101/284 (35%), Positives = 157/284 (55%), Gaps = 10/284 (3%) Query: 1 VYIGRIQWGKKEVKKSKDGXXXXXXXXXXXAEWIDVHGKHQPIIDSETFLKAKRRLSEHH 60 VY G++ WG+K++KKS + EWI GKH ++ E F KA+ L++ + Sbjct: 233 VYTGKVVWGRKDIKKSTEVGKVKDTVTRPKEEWIIADGKHPALVSEELFEKAQEILNKRY 292 Query: 61 HSPHQYNMDGKPRMTSALAGLVKCSECGRTMVYRPYTRQPAHFRCSTAGCSTRSSRYDTV 120 H P+Q +G +T+ LAGL++C CG +MV RPY + C C +SS+ V Sbjct: 293 HVPYQLE-NG---ITNPLAGLIRCENCGASMVLRPYPDKDHQVMCYN-NCGNKSSKLKYV 347 Query: 121 EARIIEGLELWLSGYKIKW-----GKRNHPAPHNGLRLKERALASLQNELKELENQRGKL 175 E ++ GL W Y+ +W KR + + + E+A+ +LQ EL ELENQ+ L Sbjct: 348 EKEVLAGLAEWCLQYRAQWDIDNKSKRKKSKLTSSIPVLEKAVENLQKELVELENQKNSL 407 Query: 176 FDFLERGIYTEEIFKERSQDISKRITAAAEGINKVQKDLDLELARKEAGSMVIPLAESVV 235 DFLERGIY + + ERSQ+++ RI A ++K + L E+ R++A +IP E V+ Sbjct: 408 HDFLERGIYDVDTYLERSQNLATRIDATKVSLSKAKLVLGQEMQREKAQIDIIPRIEKVL 467 Query: 236 KSYYQTDNPISRNALLKSVLNKVVYKKGPGQHKEQFEIFLYPRL 279 Y + ++P +N LLKSVL+ Y K + + F + L+P+L Sbjct: 468 DVYPKINDPAHKNELLKSVLDYAAYSKDKSKRNDDFSLRLFPKL 511 >C2N4Y7.1 C2N4Y7_BACCE Recombinase Length = 521 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 156/282 (55%), Gaps = 9/282 (3%) Query: 1 VYIGRIQWGKKEVKKSKDGXXXXXXXXXXXAEWIDVHGKHQPIIDSETFLKAKRRLSEHH 60 VYIG++ W K++ K D ++WI GKH+PII F + + +L+ + Sbjct: 240 VYIGKVTWQKRKEVKQPDAVKRSCARQDK-SDWIIADGKHEPIIPESLFEQVQEKLNSRY 298 Query: 61 HSPHQYNMDGKPRMTSALAGLVKCSECGRTMVYRPYTRQPAHFRCSTAGCSTRSSRYDTV 120 H P YN +G + + LAG++KCS+CG +MV R + C GC +SS + + Sbjct: 299 HVP--YNTNG---IKNPLAGIIKCSKCGYSMVQRYPKNRKETMDCKHRGCENKSSYTELI 353 Query: 121 EARIIEGLELWLSGYKIKWGKRNHP---APHNGLRLKERALASLQNELKELENQRGKLFD 177 E R++E L+ W YK + K +++ E AL L+ EL +++ Q+ L D Sbjct: 354 EKRLLEALKEWYINYKADFEKHKQDDKLKETQVIQMNEAALRKLEKELVDVQKQKNNLHD 413 Query: 178 FLERGIYTEEIFKERSQDISKRITAAAEGINKVQKDLDLELARKEAGSMVIPLAESVVKS 237 LERG+YT ++F ERS +S RIT + ++K++ E+ +++ IP E V+ Sbjct: 414 LLERGVYTVDMFLERSNVVSDRITEITSTMENLKKEIKTEIKKEKVKKDTIPQVEHVLDL 473 Query: 238 YYQTDNPISRNALLKSVLNKVVYKKGPGQHKEQFEIFLYPRL 279 Y++TD+P +N+LLKSVL K VYKK Q + FE+ LYP+L Sbjct: 474 YFKTDDPKKKNSLLKSVLEKAVYKKEKWQRLDDFELVLYPKL 515 >B7IUF9.1 B7IUF9_BACC2 Recombinase Length = 515 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 157/282 (55%), Gaps = 9/282 (3%) Query: 1 VYIGRIQWGKKEVKKSKDGXXXXXXXXXXXAEWIDVHGKHQPIIDSETFLKAKRRLSEHH 60 VYIG++ W K++ K D ++WI GKH+PII F + + +L+ + Sbjct: 234 VYIGKVTWQKRKEVKQPDAVKRSCARQDK-SDWIIADGKHEPIIPESLFEQVQEKLNSRY 292 Query: 61 HSPHQYNMDGKPRMTSALAGLVKCSECGRTMVYRPYTRQPAHFRCSTAGCSTRSSRYDTV 120 H P YN +G + + LAG++KCS+CG +MV R + C GC +SS + + Sbjct: 293 HVP--YNTNG---IKNPLAGIIKCSKCGYSMVQRYPKNRKETMDCKHRGCENKSSYTELI 347 Query: 121 EARIIEGLELWLSGYKIKWGKR---NHPAPHNGLRLKERALASLQNELKELENQRGKLFD 177 E R++E L+ W YK + K N +++ + AL L+ EL +++ Q+ L D Sbjct: 348 EKRLLEALKEWYINYKADFEKHKQDNKLKETQVIQMNKAALRKLEKELVDVQKQKNNLHD 407 Query: 178 FLERGIYTEEIFKERSQDISKRITAAAEGINKVQKDLDLELARKEAGSMVIPLAESVVKS 237 LERG+YT ++F ERS +S RIT + ++K++ E+ +++ IP E V+ Sbjct: 408 LLERGVYTVDMFLERSNVVSDRITEITSTMENLKKEIKTEIKKEKVKKDTIPQVEHVLDL 467 Query: 238 YYQTDNPISRNALLKSVLNKVVYKKGPGQHKEQFEIFLYPRL 279 Y++TD+P +N+LLKSVL K VYKK Q + FE+ LYP+L Sbjct: 468 YFKTDDPKKKNSLLKSVLEKAVYKKEKWQRLDDFELVLYPKL 509 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,537,098,668 Number of extensions: 57003250 Number of successful extensions: 173650 Number of sequences better than 1.0e-05: 88 Number of HSP's gapped: 173576 Number of HSP's successfully gapped: 88 Length of query: 279 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 145 Effective length of database: 1,798,280,193 Effective search space: 260750627985 Effective search space used: 260750627985 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)