BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0352.0008.p (160 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q8EPK6.1 Q8EPK6_OCEIH Hypothetical conserved protein 149 1e-34 B3KFV4.1 B3KFV4_9BACI Putative uncharacterized protein 134 4e-30 B3KHY5.1 B3KHY5_9BACI Putative uncharacterized protein 125 1e-27 B8E0A0.1 B8E0A0_DICTD Putative uncharacterized protein 124 2e-27 B1D7R0.1 B1D7R0_9BACL Putative uncharacterized protein 120 5e-26 >Q8EPK6.1 Q8EPK6_OCEIH Hypothetical conserved protein Length = 335 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/157 (46%), Positives = 98/157 (62%) Query: 1 MAGYRIYETKRALDYLQTRREVKXXXXXXXXXXXXXLVAGFTAALDQRIACAVVSGYANT 60 +AG R+ E KR LDY+Q+ V LVA FT+ LD+RI V+SGY +T Sbjct: 178 LAGLRVQEIKRVLDYIQSFNMVDEEKIGSFGFSGGGLVAAFTSILDERIKATVLSGYLST 237 Query: 61 FADSILTRNHCLDNYIPGILLEAEMPDLLGLIAPRGLFLESGDADHLFGPRGARMALARL 120 F SI++R HCLDNYIPGIL EM +L+ LIAPR LF+ESG D LF +++ +L Sbjct: 238 FKGSIMSRRHCLDNYIPGILEIGEMDELIALIAPRPLFIESGKDDKLFPMDQVEISMNKL 297 Query: 121 ESIYGAAHHSGQVEADFFTGGHEIHGGPAFAWLRKQL 157 IY A + ++EA +F GGHEI+G +F+WL + L Sbjct: 298 LKIYKAYNAETELEAHYFNGGHEINGEESFSWLIQNL 334 >B3KFV4.1 B3KFV4_9BACI Putative uncharacterized protein Length = 343 Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 97/158 (61%) Query: 1 MAGYRIYETKRALDYLQTRREVKXXXXXXXXXXXXXLVAGFTAALDQRIACAVVSGYANT 60 +AG R+ ET RALDYL R EV+ L++ AALD+RI AV++GY NT Sbjct: 182 LAGLRVAETLRALDYLAERPEVQPDRIGIMGFSGGGLISFLCAALDERIRAAVLAGYPNT 241 Query: 61 FADSILTRNHCLDNYIPGILLEAEMPDLLGLIAPRGLFLESGDADHLFGPRGARMALARL 120 F DSI+ HC+ NYIPG+L AE+P+ +GLIAPR L+LESG D +F G A+ +L Sbjct: 242 FKDSIMAVQHCICNYIPGMLNHAELPEWIGLIAPRPLYLESGADDRIFPAAGFNSAVEQL 301 Query: 121 ESIYGAAHHSGQVEADFFTGGHEIHGGPAFAWLRKQLA 158 Y A +++AD F G HEI G ++ WL ++L+ Sbjct: 302 RDTYRRAGAEDRLQADLFPGAHEICGRYSYDWLFERLS 339 >B3KHY5.1 B3KHY5_9BACI Putative uncharacterized protein Length = 360 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 91/154 (59%) Query: 1 MAGYRIYETKRALDYLQTRREVKXXXXXXXXXXXXXLVAGFTAALDQRIACAVVSGYANT 60 +AG R+YE R LDYL R E +A + AA+D+RI AV+ G+ +T Sbjct: 190 LAGLRVYEAIRTLDYLAMRAEADPRAIGCMGFSGGGFLAAYAAAIDERINAAVLCGFTST 249 Query: 61 FADSILTRNHCLDNYIPGILLEAEMPDLLGLIAPRGLFLESGDADHLFGPRGARMALARL 120 + SIL+ NHC+DNYI G+L AE+PD +GLIAPR LF+ESG+ D +F R A+ L Sbjct: 250 YKGSILSINHCIDNYISGVLDYAELPDWIGLIAPRPLFVESGENDPIFPAGSVREAVEIL 309 Query: 121 ESIYGAAHHSGQVEADFFTGGHEIHGGPAFAWLR 154 +IY ++++D F G HE+ G + WL+ Sbjct: 310 RNIYREEGAEHRLQSDIFPGVHEVSGRNIYHWLQ 343 >B8E0A0.1 B8E0A0_DICTD Putative uncharacterized protein Length = 329 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 61/159 (38%), Positives = 86/159 (54%) Query: 1 MAGYRIYETKRALDYLQTRREVKXXXXXXXXXXXXXLVAGFTAALDQRIACAVVSGYANT 60 + G R+++ R +D E+K A FT+A+D RI V+SGY NT Sbjct: 170 LIGLRVWDIIRTIDLFLENFEIKSDAIGIYGISGGGTTALFTSAIDDRIKATVISGYLNT 229 Query: 61 FADSILTRNHCLDNYIPGILLEAEMPDLLGLIAPRGLFLESGDADHLFGPRGARMALARL 120 F DSIL+ +HC NYIPGIL EM D+ LIAPR LF+E G D +F A ++ Sbjct: 230 FRDSILSMSHCECNYIPGILEYGEMYDIASLIAPRFLFIEHGKKDPIFPIESTVFAFKKI 289 Query: 121 ESIYGAAHHSGQVEADFFTGGHEIHGGPAFAWLRKQLAG 159 + +Y S ++ +FF GGHEI+ + WL++ L G Sbjct: 290 KEVYDFLGVSENIDCEFFDGGHEIYANKSIFWLKRILQG 328 >B1D7R0.1 B1D7R0_9BACL Putative uncharacterized protein Length = 343 Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 61/154 (39%), Positives = 88/154 (57%) Query: 5 RIYETKRALDYLQTRREVKXXXXXXXXXXXXXLVAGFTAALDQRIACAVVSGYANTFADS 64 R E ALDYL++ +V L+A AALD+R+ V+SG+ TF + Sbjct: 187 RTTELLAALDYLESYDQVDSRRIGAMGFSGGALLAWTCAALDERLQAVVLSGFPGTFKGT 246 Query: 65 ILTRNHCLDNYIPGILLEAEMPDLLGLIAPRGLFLESGDADHLFGPRGARMALARLESIY 124 I++ +HC+DNYIPG+L AE+P+ + LIAPR LF+ESG D +F A A++ L+ +Y Sbjct: 247 IMSVHHCVDNYIPGMLTRAELPEWISLIAPRPLFVESGFNDPIFPSESALEAISDLQQVY 306 Query: 125 GAAHHSGQVEADFFTGGHEIHGGPAFAWLRKQLA 158 +D F G HE+ G AF WL++QL Sbjct: 307 DNYEKKDNFSSDVFPGIHEVSGRRAFDWLKRQLT 340 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.140 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 917,349,555 Number of extensions: 34842098 Number of successful extensions: 80997 Number of sequences better than 1.0e-05: 24 Number of HSP's gapped: 81022 Number of HSP's successfully gapped: 24 Length of query: 160 Length of database: 3,060,696,203 Length adjustment: 121 Effective length of query: 39 Effective length of database: 1,920,753,388 Effective search space: 74909382132 Effective search space used: 74909382132 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 125 (52.8 bits)