BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0352.0007.p
         (169 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFV4.1 B3KFV4_9BACI Putative uncharacterized protein                102   1e-20
B1D7R0.1 B1D7R0_9BACL Putative uncharacterized protein                101   2e-20
B3KHY5.1 B3KHY5_9BACI Putative uncharacterized protein                 84   5e-15
Q8EPK6.1 Q8EPK6_OCEIH Hypothetical conserved protein                   80   8e-14

>B3KFV4.1 B3KFV4_9BACI Putative uncharacterized protein
          Length = 343

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%), Gaps = 1/97 (1%)

Query: 41  RLGGFPETAEALRPVLLERTSCSGYTRERIEITTYEGLRMPLYLLLPDQPLSTPPPAVLA 100
           RL G  ET E  +PVLLER SC GY RER+E++   G+    Y+L+P+    + P AV A
Sbjct: 41  RLIGEFETNENHKPVLLERESCDGYVRERVELSAVPGVSFAAYILIPEDQGKSMPAAV-A 99

Query: 101 IHGHGYGSREIVGLDPGGAERPGDPGLHKDFAVSLAR 137
           +HGHGYGSREIVGL P G+  P  PG+H+ FAV L +
Sbjct: 100 VHGHGYGSREIVGLRPDGSSDPNPPGIHRHFAVQLVQ 136


>B1D7R0.1 B1D7R0_9BACL Putative uncharacterized protein
          Length = 343

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 1/123 (0%)

Query: 14  STQRNSAFSKDIPFQQWRDGLAAAFTERLGGFPETAEALRPVLLERTSCSGYTRERIEIT 73
           + +++   S+ +  ++ R  L  +    +G FP  A+  +P LLERT C  Y RER+E++
Sbjct: 15  TIEQHKEQSQAMSNEERRSSLLESLRGTIGAFPTIAQGKKPRLLERTDCGSYIRERVELS 74

Query: 74  TYEGLRMPLYLLLPDQPLSTPPPAVLAIHGHGYGSREIVGLDPGGAERPGDPGLHKDFAV 133
             EG+    Y+L+P + L  P P VLAIHGHGYGSREI+GL P G+   G+P  H  FA+
Sbjct: 75  GIEGISFAAYILIP-KGLDGPLPGVLAIHGHGYGSREIIGLLPDGSPDDGEPTCHNRFAL 133

Query: 134 SLA 136
            L 
Sbjct: 134 DLV 136


>B3KHY5.1 B3KHY5_9BACI Putative uncharacterized protein
          Length = 360

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 57/102 (55%), Gaps = 10/102 (9%)

Query: 45  FPETAEALRPVLLERTSCSGYTRERIEITTYEGLRMPLYLLLPDQPLST---------PP 95
           F E    L P+LLERT    Y RER+EI T  GLRMP+Y+L+P +   T           
Sbjct: 45  FEEMRAPLDPILLERTEYDDYVRERVEIGTVTGLRMPVYVLIPKESSRTWELPGNSSGKL 104

Query: 96  PAVLAIHGHGYGSREIVGLDPGGAERPGDPGLHKDFAVSLAR 137
           P +LA+HGHGYGSRE+ G  P G       G H  FA+ LAR
Sbjct: 105 PGMLALHGHGYGSREVAGFAPDGTMSVKKGG-HNRFALELAR 145


>Q8EPK6.1 Q8EPK6_OCEIH Hypothetical conserved protein
          Length = 335

 Score = 79.7 bits (195), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 10/133 (7%)

Query: 5   EEYINKLTGSTQRNSAFSKDIPFQQWRDGLAAAFTERLGGFPETAEALRPVLLERTSCSG 64
           ++YIN +    + +    K         G+    +  LG F   +    P +LER     
Sbjct: 10  QQYINTIHSLDKHDKTHGK---------GMKDCVSHALGEFQNNSVHFNPKVLERRKLEN 60

Query: 65  YTRERIEITTYEGLRMPLYLLLPDQPLSTPPPAVLAIHGHGYGSREIVGLDPGGAERPGD 124
           Y    +EIT+ + LR+PLY+L+P++      P VLA+HGHGYG +E +GL+  G E+   
Sbjct: 61  YKLICMEITSIQPLRIPLYILIPNKKKKRKLPTVLALHGHGYGMKEAIGLNING-EQCKF 119

Query: 125 PGLHKDFAVSLAR 137
            G+H  FA  L  
Sbjct: 120 TGIHNKFAARLVN 132


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,100,233,873
Number of extensions: 47385075
Number of successful extensions: 90891
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 90903
Number of HSP's successfully gapped: 4
Length of query: 169
Length of database: 3,060,696,203
Length adjustment: 125
Effective length of query: 44
Effective length of database: 1,883,069,328
Effective search space: 82855050432
Effective search space used: 82855050432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)