BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0352.0004.p (484 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5D6.1 B3K5D6_9BACI Glycoside hydrolase family 28 545 e-153 A5FCE9.1 A5FCE9_FLAJ1 Polygalacturonase-like protein; Glycoside ... 478 e-133 B3CG16.1 B3CG16_9BACE Putative uncharacterized protein 464 e-129 B0NUT9.1 B0NUT9_BACSE Putative uncharacterized protein 463 e-128 B3JEG6.1 B3JEG6_9BACE Putative uncharacterized protein 457 e-126 >B3K5D6.1 B3K5D6_9BACI Glycoside hydrolase family 28 Length = 523 Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust. Identities = 265/460 (57%), Positives = 329/460 (71%), Gaps = 2/460 (0%) Query: 13 PELPRIPGRTFVITDYGAEEGGFTLCTSAIQAALDACAAMGGGKVVIPAGIWRTGPLTLH 72 P+LP IP T ITDYGA G T A A++ACA GGG +VIP GIW TGP+ L Sbjct: 11 PDLPVIPEHTVTITDYGAVGDGVYDNTQAFHQAIEACAKAGGGTLVIPPGIWLTGPIKLQ 70 Query: 73 SRINLSADQGALVQFDPDPALYPLLSSQYEGNAGWRCQAPLDGEGLSDVAITGEGVFDGS 132 SRI L A GA V F YP+L S YEG +RCQ+PLDGEGL DVAITG G+FDGS Sbjct: 71 SRIELHASAGAFVMFSKFFEDYPILMSTYEGRQMFRCQSPLDGEGLEDVAITGGGIFDGS 130 Query: 133 GEGWRPVKRFKMTEKQWNHLIESGGVLDPQGEVWWPSREAMEGEGFCRKLADKGDTRMEA 192 GE WRPVKR K+TE QW LI+SGGV+D QG +WWP+ A +G+ ++ G + Sbjct: 131 GEAWRPVKRGKLTESQWERLIQSGGVVDDQG-LWWPTPAARDGQETLDRIEQTGSEEPQD 189 Query: 193 FLPARAYLRPTLLSLRNCRRVLLDGPTFQNSPAWCLHPFGCEQITVRNVHVRNPWYSQNG 252 + P R YLRP LLSLRNC+R+LL GPTFQNS AWCLHP+ EQIT++N+ VRNPWY+QNG Sbjct: 190 YEPVRDYLRPNLLSLRNCKRILLSGPTFQNSAAWCLHPWASEQITIQNITVRNPWYAQNG 249 Query: 253 DGLDLESCTHALVEHSSFDVGDDAICLKSGKDEEGRKRGLPCRYITIRNCTVYHGHGGVV 312 DGLD++SC + VE+SSFDVGDDAICLKSGK+E GR G P I+IRNCTVYHGHGG+V Sbjct: 250 DGLDIDSCKYVTVENSSFDVGDDAICLKSGKNEAGRLLGKPSERISIRNCTVYHGHGGIV 309 Query: 313 IGSEMSGGVHAVRVSDCLFIGTDIGLRFKSTRGRGGVVEDIVMENISMTGIIHEAVSFHM 372 +GSEMSGG+ V VSDC FIGTDIG+RFKS RGRGGVVE+I++E I M I +A+SF++ Sbjct: 310 VGSEMSGGIKDVYVSDCTFIGTDIGIRFKSCRGRGGVVENILIERIRMRDIDGDAISFNL 369 Query: 373 FYAGVEGSEGYDEQ-YFSVTEETPQFRKITLKNLVCHGAATALLVNGLPEMPLADLTIEQ 431 +Y G GS Y E+ VTEETP FR I ++++VC GA TALL+NGLPEMP+ +LT+++ Sbjct: 370 YYEGKAGSGEYQEEVMLPVTEETPVFRNIVIQDIVCSGAHTALLINGLPEMPVENLTVKR 429 Query: 432 FRAVSERGIVLRHATGLTLDRIWLQTAETPEITAHRCSQV 471 S GIV R+ L++ + L+T + P + H+ V Sbjct: 430 SAITSREGIVCRNGQNLSIQDLVLRTQDNPLLLFHQSRNV 469 >A5FCE9.1 A5FCE9_FLAJ1 Polygalacturonase-like protein; Glycoside hydrolase family 28 Length = 560 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 223/469 (47%), Positives = 301/469 (64%), Gaps = 7/469 (1%) Query: 16 PRIPGRTFVITDYGAEEGGFTLCTSAIQAALDACAAMGGGKVVIPAGIWRTGPLTLHSRI 75 P IP + I D+GA GG+ L T A A+DA + GGGKV+IP GIW TGP+ L S I Sbjct: 46 PVIPKNSVNIKDFGAVNGGYVLNTKAFADAIDAVSKKGGGKVIIPPGIWLTGPIILKSNI 105 Query: 76 NLSADQGALVQFDPDPALYPLLSSQYEGNAGWRCQAPLDGEGLSDVAITGEGVFDGSGEG 135 L A++GAL++F D +LYP++ + +EG WRC +P+ G+ L ++A TG GV+DGSGE Sbjct: 106 ELHAERGALIKFSTDKSLYPIIGTNFEGLNTWRCISPIYGKNLENIAFTGNGVWDGSGEV 165 Query: 136 WRPVKRFKMTEKQWNHLIESGGVLDPQGEVWWPSREAMEGEGFCRKLADKGDTRMEAFLP 195 WR VK+ K+TE QW + SGGVL+ W+PS M + E F Sbjct: 166 WRQVKKSKLTESQWKKFVSSGGVLNKDKTSWYPSETFMNASKGADQNVRPDLKTKEEFET 225 Query: 196 ARAYLRPTLLSLRNCRRVLLDGPTFQNSPAWCLHPFGCEQITVRNVHVRNPWYSQNGDGL 255 +LRP ++S++N +RVL DGP FQNSPAW +HPF E + VRNV VRNPWYSQNGDGL Sbjct: 226 IHDFLRPVMVSIQNSKRVLFDGPVFQNSPAWNIHPFMVEDLIVRNVTVRNPWYSQNGDGL 285 Query: 256 DLESCTHALVEHSSFDVGDDAICLKSGKDEEGRKRGLPCRYITIRNCTVYHGHGGVVIGS 315 D+E C + LVE+SSFDVGDDAIC+KSGKD++G +RG+PC I +RN VYHGHGGV +GS Sbjct: 286 DVECCKNVLVENSSFDVGDDAICIKSGKDKDGLERGIPCENIIVRNNIVYHGHGGVTVGS 345 Query: 316 EMSGGVHAVRVSDCLFIGTDIGLRFKSTRGRGGVVEDIVMENISMTGIIHEAVSFHMFYA 375 EMSGGV + VS+C F+GTD+GLRFKS RGRGGVVE+I + ++ MT I +A+SF+++Y Sbjct: 346 EMSGGVKNLHVSNCTFMGTDVGLRFKSARGRGGVVENIFISDVFMTDIPSQAISFNLYYG 405 Query: 376 GVEGSEGYDE-------QYFSVTEETPQFRKITLKNLVCHGAATALLVNGLPEMPLADLT 428 G +E +E + VT ETPQF+ I++KN+ GA A+ + GLPEM L ++ Sbjct: 406 GKSIAETLEEGGDKIVNKAMPVTIETPQFKNISIKNITIKGAQQAVFLQGLPEMNLENIE 465 Query: 429 IEQFRAVSERGIVLRHATGLTLDRIWLQTAETPEITAHRCSQVVLTQSE 477 I +E+G + A G+ + L + + + L E Sbjct: 466 ISNLTVTAEKGFSIIDAKGIKITNAKLDIENSNVFEVYNVKNMSLKDVE 514 >B3CG16.1 B3CG16_9BACE Putative uncharacterized protein Length = 534 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 227/468 (48%), Positives = 306/468 (65%), Gaps = 12/468 (2%) Query: 6 ETIAYPVP--ELPRIPGRTFVITDYGAEEGGFTLCTSAIQAALDACAAMGGGKVVIPAGI 63 E + + +P E P P T I D+GA+ G L T AI A+ A A GGGKVVIP G+ Sbjct: 39 ENLPFDMPKVEQPAFPDYTVNIIDFGAKGDGIVLNTKAINDAIKAVNAKGGGKVVIPGGL 98 Query: 64 WRTGPLTLHSRINLSADQGALVQFDPDPALYPLLSSQYEGNAGWRCQAPLDGEGLSDVAI 123 W TGP+ L S +NL + AL+ F D YP++ + +EG RCQ+P+ ++AI Sbjct: 99 WLTGPIELLSNVNLYTEMNALILFTDDFEAYPIIETSFEGLNTRRCQSPISAWNAENIAI 158 Query: 124 TGEGVFDGSGEGWRPVKRFKMTEKQWNHLIESGGVLDPQGEVWWPSREAMEGEGFCRKLA 183 TG GVFDGSG+ WRPVK+ K+T QWN L+ SGGV+D G +W+P+ A++G + Sbjct: 159 TGNGVFDGSGDSWRPVKKGKLTSSQWNSLVNSGGVVDEAGSIWYPTAGALKGAMATKDFN 218 Query: 184 D-KGDTRMEAFLPARAYLRPTLLSLRNCRRVLLDGPTFQNSPAWCLHPFGCEQITVRNVH 242 + +G E + R +LRP LL++ +RVLL+G TF+NSP+WCLHP CE IT+ NV Sbjct: 219 NPEGIETDEEWNEIRPWLRPVLLNIVKSKRVLLEGVTFKNSPSWCLHPLSCEHITIHNVK 278 Query: 243 VRNPWYSQNGDGLDLESCTHALVEHSSFDVGDDAICLKSGKDEEGRKRGLPCRYITIRNC 302 V NPWYSQNGD LDLESC +AL+ ++ FD GDDAIC+KSGKDE+GRKRG PC+ + ++N Sbjct: 279 VFNPWYSQNGDALDLESCKNALIINNIFDAGDDAICIKSGKDEDGRKRGEPCQNVIVKNN 338 Query: 303 TVYHGHGGVVIGSEMSGGVHAVRVSDCLFIGTDIGLRFKSTRGRGGVVEDIVMENISMTG 362 TV HGHGG V+GSEMSGGV V V+DC F+GTD+GLRFKSTRGRGGVVE I + NI+M Sbjct: 339 TVLHGHGGFVVGSEMSGGVKNVYVTDCTFLGTDVGLRFKSTRGRGGVVEGIYIHNINMID 398 Query: 363 IIHEAVSFHMFYAGVEGSEG--------YDEQYFSVTEETPQFRKITLKNLVCHGAATAL 414 I HEA+ F +FY G E +VTEETP FR I + N+ C G A+ Sbjct: 399 IPHEALLFDLFYGGKGAGEESEEELEGRMKSSIPAVTEETPAFRDIHITNVTCKGTGRAM 458 Query: 415 LVNGLPEMPLADLTIEQFRAV-SERGIVLRHATGLTLDRIWLQTAETP 461 NGLPEMP+ ++ ++ +++GIV+ A ++++ + ++T TP Sbjct: 459 FFNGLPEMPIRNVYVKDIVVTDAKQGIVISQAENVSIENVKIETKGTP 506 >B0NUT9.1 B0NUT9_BACSE Putative uncharacterized protein Length = 550 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/457 (49%), Positives = 303/457 (66%), Gaps = 12/457 (2%) Query: 11 PVPELPRIPGRTFVITDYGAEEGGFTLCTSAIQAALDACAAMGGGKVVIPAGIWRTGPLT 70 P E P P T I +GA+ G TL T AI A+ A A GGGKVVIP G+W TGP+ Sbjct: 64 PKVEQPSFPDYTVSILQFGAKSDGTTLNTKAINDAIKAVNAKGGGKVVIPEGLWLTGPIE 123 Query: 71 LHSRINLSADQGALVQFDPDPALYPLLSSQYEGNAGWRCQAPLDGEGLSDVAITGEGVFD 130 L S +NL ++ ALV F D YP+L + +EG RCQ+P+ ++AITG GVFD Sbjct: 124 LLSNVNLHTEKNALVVFTDDFNAYPILETSFEGLNTRRCQSPISARNAENIAITGYGVFD 183 Query: 131 GSGEGWRPVKRFKMTEKQWNHLIESGGVLDPQGEVWWPSREAMEGEGFCRKLAD-KGDTR 189 GSG+ WRPVK+ K+T QW+ L++SGGV+D +W+P+ +++G C+ + +G Sbjct: 184 GSGDSWRPVKKSKLTAGQWDALVKSGGVVDKS--IWYPTAGSLKGALACKNFNNPEGIET 241 Query: 190 MEAFLPARAYLRPTLLSLRNCRRVLLDGPTFQNSPAWCLHPFGCEQITVRNVHVRNPWYS 249 E + R +LRP LL++ +RVLL+G TF+NSP+WCLHP CE IT+ V V NPWYS Sbjct: 242 DEEWNEIRPWLRPVLLNIVKSKRVLLEGVTFKNSPSWCLHPLSCEHITINQVKVFNPWYS 301 Query: 250 QNGDGLDLESCTHALVEHSSFDVGDDAICLKSGKDEEGRKRGLPCRYITIRNCTVYHGHG 309 QNGD LDLESC +AL+ ++ FD GDDAIC+KSGKDE+GRKRG PC+ + ++N TV HGHG Sbjct: 302 QNGDALDLESCKNALIINNIFDAGDDAICIKSGKDEDGRKRGEPCQNVIVKNNTVLHGHG 361 Query: 310 GVVIGSEMSGGVHAVRVSDCLFIGTDIGLRFKSTRGRGGVVEDIVMENISMTGIIHEAVS 369 G V+GSEMSGGV + V+DC F+GTD+GLRFKSTRGRGGVVE I + NI M I HEA+ Sbjct: 362 GFVVGSEMSGGVKNIYVTDCTFLGTDVGLRFKSTRGRGGVVEGIYIHNIHMIDIPHEALL 421 Query: 370 FHMFYAGVEGSEGYDEQYF--------SVTEETPQFRKITLKNLVCHGAATALLVNGLPE 421 F +FY G E +E VT ETP FR I + N++C G+ A+ NGLPE Sbjct: 422 FDLFYGGKAAGEETEEDLKGRMKTAVPQVTVETPSFRDIHISNIICKGSGRAMFFNGLPE 481 Query: 422 MPLADLTIEQ-FRAVSERGIVLRHATGLTLDRIWLQT 457 MP+ ++T++ ++ G+V+ A G+TL+ I ++T Sbjct: 482 MPIRNVTVKDVIINDAKEGVVISQAEGVTLENIRIET 518 >B3JEG6.1 B3JEG6_9BACE Putative uncharacterized protein Length = 535 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 225/454 (49%), Positives = 301/454 (66%), Gaps = 8/454 (1%) Query: 14 ELPRIPGRTFVITDYGAEEGGFTLCTSAIQAALDACAAMGGGKVVIPAGIWRTGPLTLHS 73 +LP P + IT++GA G TL T A A+ A A GGGKV++PAG+W TGP+ L S Sbjct: 50 QLPVFPDYSRSITEFGAVADGITLNTEAFDKAIKAVAEKGGGKVIVPAGLWLTGPIVLQS 109 Query: 74 RINLSADQGALVQFDPDPALYPLLSSQYEGNAGWRCQAPLDGEGLSDVAITGEGVFDGSG 133 INL ++ ALV F D YP++ + +EG RCQ+P+ ++AITG+GV DG+G Sbjct: 110 NINLYLEENALVLFTADHTQYPIVKTSFEGLETRRCQSPISALNAENLAITGKGVMDGNG 169 Query: 134 EGWRPVKRFKMTEKQWNHLIESGGVLDPQGEVWWPSREAMEGEGFCRKL-ADKGDTRMEA 192 + WRPVK+ KMT QW L++SGGVLD G +W+PS +++G C+ +G E Sbjct: 170 DTWRPVKKGKMTANQWKKLVDSGGVLDESGRIWYPSEGSIKGAMACKNFNVPEGINTDEE 229 Query: 193 FLPARAYLRPTLLSLRNCRRVLLDGPTFQNSPAWCLHPFGCEQITVRNVHVRNPWYSQNG 252 + R +LRP LLS C++VLL+G TF+NSP+WCLHP CE IT+ N+ V NPWYSQNG Sbjct: 230 WNSIRDWLRPVLLSFIKCKKVLLEGVTFKNSPSWCLHPLSCEDITINNISVSNPWYSQNG 289 Query: 253 DGLDLESCTHALVEHSSFDVGDDAICLKSGKDEEGRKRGLPCRYITIRNCTVYHGHGGVV 312 D LDLESC AL+++SSFD GDD IC+KSGKDE+GR+RG PC+ + IRN V HGHGG V Sbjct: 290 DALDLESCNRALIQNSSFDAGDDGICIKSGKDEDGRRRGEPCQNVIIRNNVVLHGHGGFV 349 Query: 313 IGSEMSGGVHAVRVSDCLFIGTDIGLRFKSTRGRGGVVEDIVMENISMTGIIHEAVSFHM 372 +GSEMSGGV + V +C F+GTD+GLRFKSTRGRGGVVE+I + NI+M I +E + F + Sbjct: 350 VGSEMSGGVKNIYVDNCTFLGTDVGLRFKSTRGRGGVVENIHINNINMINIPNEGLIFDL 409 Query: 373 FYAGVEGSEG------YDEQYFSVTEETPQFRKITLKNLVCHGAATALLVNGLPEMPLAD 426 FY G EG +++ +VTEETP FR I +KN+ A+L NGLPEMP+ + Sbjct: 410 FYGGKAPGEGDGYNNPTEQKIPAVTEETPAFRDIFIKNVTAKNVGRAILFNGLPEMPIKN 469 Query: 427 LTIEQFRAVSER-GIVLRHATGLTLDRIWLQTAE 459 + IE + G++L A G TL + + T + Sbjct: 470 IHIENVTMSDAKDGVILNRADGATLKNVKVITTK 503 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,148,785,354 Number of extensions: 144146010 Number of successful extensions: 270464 Number of sequences better than 1.0e-05: 845 Number of HSP's gapped: 269155 Number of HSP's successfully gapped: 1051 Length of query: 484 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 344 Effective length of database: 1,741,754,103 Effective search space: 599163411432 Effective search space used: 599163411432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)