BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0351.0012.p (243 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFP8.1 B3KFP8_9BACI Regulatory protein DeoR 365 2e-99 B1DD33.1 B1DD33_9BACL Transcriptional regulator, DeoR family 363 7e-99 B1DJQ6.1 B1DJQ6_9BACL Transcriptional regulator, DeoR family 318 2e-85 Q5WJC4.1 Q5WJC4_BACSK DeoR family transcriptional regulator 168 4e-40 C5ELR2.1 C5ELR2_9FIRM Regulatory protein 151 6e-35 >B3KFP8.1 B3KFP8_9BACI Regulatory protein DeoR Length = 249 Score = 365 bits (938), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 176/239 (73%), Positives = 206/239 (86%) Query: 2 IMEVLLNQKDVTVNELSDKLQVTGKTIREDLSKLEEQGLIMRVHGGAVLAQSDQFGILPS 61 IME LL K+VTV +LS +LQVTGKTIREDL+KLEEQGLI+RVHGGAVLA SDQFGILPS Sbjct: 10 IMEYLLTHKEVTVADLSQQLQVTGKTIREDLTKLEEQGLIVRVHGGAVLAHSDQFGILPS 69 Query: 62 KNPLDKYSDEKTEIAQLALAHIAEDDIIALDGGSTTLEIARRLDNIPLTVITNDVYIISE 121 K PL K+ DEKTEIAQ AL HI DDIIALDGGSTTLEIARRL+++PLTVITNDVYIISE Sbjct: 70 KEPLAKHPDEKTEIAQKALKHINTDDIIALDGGSTTLEIARRLEDMPLTVITNDVYIISE 129 Query: 122 LVQKDRIRLVVPGGYRVRNILAGPEAVSYVQKLNIEKAFLSATAVHIEHGLSIYTGDFID 181 L K+ IRLVVPGGYRVRN+LAGPE V+YV +LNI+KAF+SAT VH++HGLSIYTGD I Sbjct: 130 LATKNHIRLVVPGGYRVRNMLAGPEGVAYVTQLNIQKAFISATGVHLDHGLSIYTGDLIP 189 Query: 182 FKQALVSTARTVFAVCDHHKFGHTALRTFASLQEVDVLLTDSGLAQETAEQFRNAGVNI 240 FK+AL+ T+ V+AV DHHKFG TALRTF+SLQE+ ++TD+GL+ ET +Q+ AGV + Sbjct: 190 FKRALIETSAEVYAVVDHHKFGQTALRTFSSLQEISGIMTDAGLSPETVKQYEGAGVTL 248 >B1DD33.1 B1DD33_9BACL Transcriptional regulator, DeoR family Length = 250 Score = 363 bits (932), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 173/240 (72%), Positives = 204/240 (85%) Query: 2 IMEVLLNQKDVTVNELSDKLQVTGKTIREDLSKLEEQGLIMRVHGGAVLAQSDQFGILPS 61 IMEVLL QK+VTV ELS++L VTGKTIREDL+KLEEQGL+ RVHGGAVLA SDQFGILP Sbjct: 10 IMEVLLTQKEVTVAELSERLNVTGKTIREDLTKLEEQGLVKRVHGGAVLANSDQFGILPV 69 Query: 62 KNPLDKYSDEKTEIAQLALAHIAEDDIIALDGGSTTLEIARRLDNIPLTVITNDVYIISE 121 K PL K++DEKT+IA A+ I+ +DIIALDGGSTTLEIARRL++ P+TVITNDVYIISE Sbjct: 70 KEPLAKHADEKTDIADTAMRFISGNDIIALDGGSTTLEIARRLNDFPVTVITNDVYIISE 129 Query: 122 LVQKDRIRLVVPGGYRVRNILAGPEAVSYVQKLNIEKAFLSATAVHIEHGLSIYTGDFID 181 L K+ +RLVVPGGYRVRN+LAGPEAV+YV+ LNI KAF+SAT VH+EHGLS+YTGD ID Sbjct: 130 LAGKENVRLVVPGGYRVRNVLAGPEAVAYVRNLNINKAFISATGVHLEHGLSVYTGDLID 189 Query: 182 FKQALVSTARTVFAVCDHHKFGHTALRTFASLQEVDVLLTDSGLAQETAEQFRNAGVNIE 241 FKQAL++TAR + V DHHKFGH+ALRTFA L E+ LLTD GL ++TA FR G+ +E Sbjct: 190 FKQALMTTARECYGVADHHKFGHSALRTFARLSELTALLTDKGLPEDTAAAFRATGIRVE 249 >B1DJQ6.1 B1DJQ6_9BACL Transcriptional regulator, DeoR family Length = 245 Score = 318 bits (815), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 153/238 (64%), Positives = 193/238 (81%) Query: 3 MEVLLNQKDVTVNELSDKLQVTGKTIREDLSKLEEQGLIMRVHGGAVLAQSDQFGILPSK 62 ME LL ++VTV +LS++L VTGKTIREDL++LEE+GL++R+HGGAVLAQ+DQ GIL + Sbjct: 1 MEALLASREVTVQDLSERLNVTGKTIREDLARLEEKGLLLRIHGGAVLAQTDQLGILSQQ 60 Query: 63 NPLDKYSDEKTEIAQLALAHIAEDDIIALDGGSTTLEIARRLDNIPLTVITNDVYIISEL 122 PL ++S EKTEIA+LAL I DIIALDGGSTTLEIA+RL N PLTV+TNDV+II+EL Sbjct: 61 EPLVRHSSEKTEIAELALTFIDPGDIIALDGGSTTLEIAKRLRNQPLTVVTNDVHIIAEL 120 Query: 123 VQKDRIRLVVPGGYRVRNILAGPEAVSYVQKLNIEKAFLSATAVHIEHGLSIYTGDFIDF 182 +KD I+LVVPGGYRVRN+LAG EA +Y++KLNI+KAFLSAT VH E G +IYTGD F Sbjct: 121 SRKDEIQLVVPGGYRVRNMLAGAEAEAYIRKLNIKKAFLSATGVHAEFGFTIYTGDLTAF 180 Query: 183 KQALVSTARTVFAVCDHHKFGHTALRTFASLQEVDVLLTDSGLAQETAEQFRNAGVNI 240 K+AL+ TA+T + V DHHKF AL TFA E++ +LTDSG++ +TA Q+R AG N+ Sbjct: 181 KRALLDTAQTSYVVVDHHKFAQGALFTFADFHEINTILTDSGISSDTAGQYRQAGANL 238 >Q5WJC4.1 Q5WJC4_BACSK DeoR family transcriptional regulator Length = 251 Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 97/242 (40%), Positives = 145/242 (59%), Gaps = 4/242 (1%) Query: 2 IMEVLLNQKDVTVNELSDKLQVTGKTIREDLSKLEEQGLIMRVHGGAVLAQSDQFGILPS 61 ++ L K + V++ S+ L VT KTIR DL +LEE+ L+ RVHGGAVL ++D + P Sbjct: 10 LLAYLAKHKSIRVSQASEWLGVTEKTIRLDLERLEEKKLLKRVHGGAVLMETDT-SLFPI 68 Query: 62 KNPLDKYSDEKTEIAQLALAHIAEDDIIALDGGSTTLEIARRLDNIPLTVITNDVYIISE 121 + + EK IA+ A A I E+D+I LDGGSTTL +A RL + P+TVITND+ I + Sbjct: 69 QEREQRNEKEKHAIAEKAKALICENDVILLDGGSTTLALAERLGDKPMTVITNDIRIANA 128 Query: 122 LVQKDRIRLVVPGGYRV--RNILAGPEAVSYVQKLNIEKAFLSATAVHIEHGLSIYTGDF 179 L +K+ I+L++ GG R+ + L + + ++ L ++K FL AT V I+HGLSI Sbjct: 129 LYEKEAIQLILLGGTRLGTSSALYSQQTTAMLKSLYVQKVFLGATGVSIDHGLSILNSFH 188 Query: 180 IDFKQALVSTARTVFAVCDHHKFGHTALRTFASLQEVDVLLTDSGLAQETAEQFRNA-GV 238 ++K+A ++ R + D KFG L FA + E+D L++D L ET N G+ Sbjct: 189 YEWKRAAINCGRKTILLSDSSKFGQVGLMRFADITEIDELVSDDLLDSETRSVLENEYGI 248 Query: 239 NI 240 N+ Sbjct: 249 NV 250 >C5ELR2.1 C5ELR2_9FIRM Regulatory protein Length = 255 Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 98/246 (39%), Positives = 142/246 (57%), Gaps = 10/246 (4%) Query: 2 IMEVLLNQKDVTVNELSDKLQVTGKTIREDLSKLEEQGLIMRVHGGAVLA-QSDQFGILP 60 IM +L ++ V V LS +L+VT KT+R DL +LE Q L+ RVHGGAVL Q+ Sbjct: 10 IMGILKDEGMVDVKTLSQRLEVTEKTVRLDLKELENQNLVERVHGGAVLKIQTMSLNSRK 69 Query: 61 SKNPLDKYSDEKTEIAQLALAHIAEDDIIALDGGSTTLEIARRLDNIPLTVITNDVYIIS 120 S L + ++K IA+ AL I EDD+I LD GSTT E+A L + +TV+TND+ I++ Sbjct: 70 SSRRL-SHLEQKQRIARRALTLIREDDVILLDDGSTTQELANLLGDFRVTVLTNDLLIVN 128 Query: 121 ELVQKDRIRLVVPGGYRVRN----ILAGPEAVSYVQKLNIEKAFLSATAVHIEHGLSIYT 176 EL+ K + L + GG R+ I+ G +A+ +++K + K FL + V + GL I+ Sbjct: 129 ELMYKPNVTLYIIGGLVRRDSDSYIVTGEDAIQFLKKYRVSKLFLGTSTVDTKEGLMIFN 188 Query: 177 -GDFIDF-KQALVSTARTVFAVCDHHKFGHTALRTFASLQEVDVLLTDSGLAQETAEQFR 234 GD +F K+A + A V + D KF TA A L +VD +TDSGL Q+ E++ Sbjct: 189 YGD--NFTKRAFIDAADQVICLADSSKFERTAFTKVAQLDDVDTFVTDSGLDQDVIERYE 246 Query: 235 NAGVNI 240 G I Sbjct: 247 GLGKKI 252 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,309,217,445 Number of extensions: 50870277 Number of successful extensions: 185432 Number of sequences better than 1.0e-05: 3852 Number of HSP's gapped: 178325 Number of HSP's successfully gapped: 3852 Length of query: 243 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 111 Effective length of database: 1,817,122,223 Effective search space: 201700566753 Effective search space used: 201700566753 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)