BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0066.p (185 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK27.1 B3KK27_9BACI Elongation factor P 343 5e-93 Q9K951.1 EFP_BACHD Elongation factor P 276 5e-73 Q8EQ28.1 EFP_OCEIH Elongation factor P 274 2e-72 Q4MJ94.1 Q4MJ94_BACCE Elongation factor P 271 2e-71 C3C7J7.1 C3C7J7_BACTU Elongation factor P 271 2e-71 >B3KK27.1 B3KK27_9BACI Elongation factor P Length = 185 Score = 343 bits (879), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 165/185 (89%), Positives = 176/185 (95%) Query: 1 VISVNDFKTGLTVEVDGDIFTVLDFQHVKPGKGAAFVRSKLKNLRNGNTVERTFRAGETI 60 +ISVNDFKTGLTVEVDGDIFTVLDFQHVKPGKGAAFVRSKLKNLRNGNTVE+TFRAGETI Sbjct: 1 MISVNDFKTGLTVEVDGDIFTVLDFQHVKPGKGAAFVRSKLKNLRNGNTVEKTFRAGETI 60 Query: 61 GRAIIENRGVQYLYASGSDHVFMDNETYDQFELSAKQLEWELNFLKENMTVNIVSYQGEI 120 GRAII+NRGVQYLYASG +HVFMDNETYDQF L+++QLEWELNFLKENM VNI+SYQGEI Sbjct: 61 GRAIIDNRGVQYLYASGQEHVFMDNETYDQFSLTSEQLEWELNFLKENMNVNIISYQGEI 120 Query: 121 LGINLPTSVELKVTETEPGVKGNTAQGATKAATLETGLTVQVPLFINENDVLLIDTREGK 180 LGINLP SVELKV ETEPG+KGNTA GATK A +ETGL VQVPLFINE+DVLLIDTREGK Sbjct: 121 LGINLPNSVELKVVETEPGIKGNTATGATKNAKVETGLNVQVPLFINEDDVLLIDTREGK 180 Query: 181 YISRA 185 YISRA Sbjct: 181 YISRA 185 >Q9K951.1 EFP_BACHD Elongation factor P Length = 185 Score = 276 bits (707), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 130/185 (70%), Positives = 154/185 (83%) Query: 1 VISVNDFKTGLTVEVDGDIFTVLDFQHVKPGKGAAFVRSKLKNLRNGNTVERTFRAGETI 60 +ISVNDFKTGLT+EVD I+ V++FQHVKPGKGAAFVRSKL+NLR G E+TFRAGE + Sbjct: 1 MISVNDFKTGLTIEVDNGIWQVMEFQHVKPGKGAAFVRSKLRNLRTGAVQEKTFRAGEKV 60 Query: 61 GRAIIENRGVQYLYASGSDHVFMDNETYDQFELSAKQLEWELNFLKENMTVNIVSYQGEI 120 +A IENR +QYLYASG H FMDNET++Q ELS Q+E EL FLKENM V+++SYQGE Sbjct: 61 SKAHIENRRMQYLYASGDVHTFMDNETFEQLELSTAQIEHELKFLKENMEVHVISYQGET 120 Query: 121 LGINLPTSVELKVTETEPGVKGNTAQGATKAATLETGLTVQVPLFINENDVLLIDTREGK 180 LG+ +P +VEL VTETEPG+KG+TA G TK ATLETGLTVQVP F+NE DVL+IDTR G Sbjct: 121 LGVEVPNTVELTVTETEPGIKGDTASGGTKPATLETGLTVQVPFFVNEGDVLVIDTRSGD 180 Query: 181 YISRA 185 Y+SRA Sbjct: 181 YVSRA 185 >Q8EQ28.1 EFP_OCEIH Elongation factor P Length = 185 Score = 274 bits (701), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 129/185 (69%), Positives = 156/185 (84%) Query: 1 VISVNDFKTGLTVEVDGDIFTVLDFQHVKPGKGAAFVRSKLKNLRNGNTVERTFRAGETI 60 +ISVNDFKTGLTVEVD DI+ V++FQHVKPGKGAAFVRSKL+NLR+GN E+TFRAGE + Sbjct: 1 MISVNDFKTGLTVEVDNDIWQVIEFQHVKPGKGAAFVRSKLRNLRSGNIQEKTFRAGEKV 60 Query: 61 GRAIIENRGVQYLYASGSDHVFMDNETYDQFELSAKQLEWELNFLKENMTVNIVSYQGEI 120 +A IENR +QYLYASG H FMD TYDQ E+ KQ++ +L F+KENM V+IVSY+ EI Sbjct: 61 SKAHIENRKMQYLYASGDAHAFMDTNTYDQIEIQGKQIQEQLKFIKENMEVSIVSYENEI 120 Query: 121 LGINLPTSVELKVTETEPGVKGNTAQGATKAATLETGLTVQVPLFINENDVLLIDTREGK 180 LG++LP +VEL VTETEPG+KG+TA G +K ATLETGL VQVP FINE DVL+I+T +GK Sbjct: 121 LGVDLPNNVELTVTETEPGIKGDTASGGSKPATLETGLIVQVPFFINEGDVLVINTSDGK 180 Query: 181 YISRA 185 Y+SRA Sbjct: 181 YVSRA 185 >Q4MJ94.1 Q4MJ94_BACCE Elongation factor P Length = 185 Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 128/185 (69%), Positives = 156/185 (84%) Query: 1 VISVNDFKTGLTVEVDGDIFTVLDFQHVKPGKGAAFVRSKLKNLRNGNTVERTFRAGETI 60 +ISVNDF+TGLT+ VD ++ VLDFQHVKPGKGAAFVRSKL+NLR G+ E+TFRAGE + Sbjct: 1 MISVNDFRTGLTISVDNSLWQVLDFQHVKPGKGAAFVRSKLRNLRTGSVQEKTFRAGEKV 60 Query: 61 GRAIIENRGVQYLYASGSDHVFMDNETYDQFELSAKQLEWELNFLKENMTVNIVSYQGEI 120 +A IENR +QYLYASG HVFMDN TY+Q EL KQ+E EL FLKENM V+I++YQGE+ Sbjct: 61 EKAHIENRRMQYLYASGEAHVFMDNGTYEQIELGEKQIERELKFLKENMEVSIMTYQGEV 120 Query: 121 LGINLPTSVELKVTETEPGVKGNTAQGATKAATLETGLTVQVPLFINENDVLLIDTREGK 180 LG+ LP +VEL+VTETEPG+KG+TA TK ATLETGL VQVP+FINE ++L+I+T EGK Sbjct: 121 LGVELPNTVELQVTETEPGIKGDTASNVTKPATLETGLVVQVPIFINEGEMLIINTGEGK 180 Query: 181 YISRA 185 Y+SRA Sbjct: 181 YVSRA 185 >C3C7J7.1 C3C7J7_BACTU Elongation factor P Length = 185 Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 128/185 (69%), Positives = 156/185 (84%) Query: 1 VISVNDFKTGLTVEVDGDIFTVLDFQHVKPGKGAAFVRSKLKNLRNGNTVERTFRAGETI 60 +ISVNDF+TGLT+ VD ++ VLDFQHVKPGKGAAFVRSKL+NLR G+ E+TFRAGE + Sbjct: 1 MISVNDFRTGLTISVDNSLWQVLDFQHVKPGKGAAFVRSKLRNLRTGSVQEKTFRAGEKV 60 Query: 61 GRAIIENRGVQYLYASGSDHVFMDNETYDQFELSAKQLEWELNFLKENMTVNIVSYQGEI 120 +A IENR +QYLYASG HVFMDN TY+Q EL KQ+E EL FLKENM V+I++YQGE+ Sbjct: 61 EKAHIENRRMQYLYASGEAHVFMDNGTYEQIELGEKQIERELKFLKENMEVSIMTYQGEV 120 Query: 121 LGINLPTSVELKVTETEPGVKGNTAQGATKAATLETGLTVQVPLFINENDVLLIDTREGK 180 LG+ LP +VEL+VTETEPG+KG+TA TK ATLETGL VQVP+FINE ++L+I+T EGK Sbjct: 121 LGVELPNTVELQVTETEPGIKGDTASNVTKPATLETGLVVQVPIFINEGEMLIINTGEGK 180 Query: 181 YISRA 185 Y+SRA Sbjct: 181 YVSRA 185 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,044,325,744 Number of extensions: 41249555 Number of successful extensions: 82928 Number of sequences better than 1.0e-05: 1876 Number of HSP's gapped: 82239 Number of HSP's successfully gapped: 1876 Length of query: 185 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 58 Effective length of database: 1,864,227,298 Effective search space: 108125183284 Effective search space used: 108125183284 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 127 (53.5 bits)