BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0064.p (163 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK24.1 B3KK24_9BACI Putative uncharacterized protein 190 4e-47 B1DFJ3.1 B1DFJ3_9BACL Putative uncharacterized protein 153 5e-36 A7GSL8.1 A7GSL8_BACCN Putative uncharacterized protein 89 1e-16 A8FF32.1 A8FF32_BACP2 Hypothetical membrane protein 85 2e-15 P54516.1 YQHR_BACSU Uncharacterized protein yqhR 84 3e-15 >B3KK24.1 B3KK24_9BACI Putative uncharacterized protein Length = 165 Score = 190 bits (482), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 87/155 (56%), Positives = 120/155 (77%), Gaps = 1/155 (0%) Query: 6 KQKSEHTNPFVFSIELGFFAGFIWGGVRWLIYVLHFTKVIPGFLAEPFFKHEFLMTPAGH 65 +++++ TNPF F++ELG++AG IWGGV W+ Y L FTKV+PGFL EPFFKHEFL T AG Sbjct: 7 RKQNQITNPFTFALELGYYAGLIWGGVLWIFYWLRFTKVVPGFLLEPFFKHEFLKTTAGQ 66 Query: 66 LLGYLCFIVFSVVASVLYVLILRKLKGPWPGMIFGVLCWSAIFLA-GSWQFLQQKMFRLP 124 + G+L FI FSV+AS++YV + RKLKGPWPG+ +G++ W+ +F+A W L + +L Sbjct: 67 IAGWLSFIAFSVIASLIYVALFRKLKGPWPGIAYGIVWWAVLFVALNPWLRLTDPVKKLS 126 Query: 125 WNSVVSEFCIFLLWGLFIGYTAAMEYTDERKREQQ 159 W++ +SE CIF+LWGLFIGYT A E+TDE+ RE + Sbjct: 127 WDTNISEVCIFILWGLFIGYTIAQEFTDEKLREPK 161 >B1DFJ3.1 B1DFJ3_9BACL Putative uncharacterized protein Length = 180 Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 77/156 (49%), Positives = 107/156 (68%), Gaps = 1/156 (0%) Query: 3 KSLKQKSEHTNPFVFSIELGFFAGFIWGGVRWLIYVLHFTKVIPGFLAEPFFKHEFLMTP 62 KS HTNP++FS +G FAG IWG +RWL Y L FT +PG LA+PFFK +L T Sbjct: 20 KSEYGGQHHTNPWLFSSMIGLFAGLIWGILRWLFYELKFTTELPGLLADPFFKSSYLKTG 79 Query: 63 AGHLLGYLCFIVFSVVASVLYVLILRKLKGPWPGMIFGVLCWSAIF-LAGSWQFLQQKMF 121 G ++G +IVFSV+A++LY ++L +L+GPWPG+ +G+ W+ +F L G + +++ Sbjct: 80 WGIVVGIASYIVFSVLAAMLYKVMLGRLRGPWPGVFYGLAWWAVVFLLLGPVLGMSRQIT 139 Query: 122 RLPWNSVVSEFCIFLLWGLFIGYTAAMEYTDERKRE 157 WN++ SE CIFLLWGLFIGY+ A E+TDE RE Sbjct: 140 VAGWNTLFSELCIFLLWGLFIGYSIAFEFTDEASRE 175 >A7GSL8.1 A7GSL8_BACCN Putative uncharacterized protein Length = 161 Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%) Query: 5 LKQKSEHTNPFVFSIELGFFAGFIWGGVRWLIYVLHFTKVIPGFLAEPFFKHEFLMTPAG 64 +KQ+ N FV ++G F G WG + + +++ FT+V +L PF ++ G Sbjct: 1 MKQEQTGINNFV---QIGLFGGVFWGSIWYFLHIFSFTEVGTNYLLLPFALGDWKEGVWG 57 Query: 65 HLLGYLCFIVFSVVASVLYVLILRKLKGPWPGMIFGVLCWSAIFLA-GSWQFLQQKMFRL 123 ++ G +C FS+V + LY +K +G PG+++G+ WS +FL GS + + L Sbjct: 58 NIAGIICIGFFSIVVAFLYKTFFKKFEGVLPGLLYGLFWWSLLFLGLGSIAPVIKNAMHL 117 Query: 124 PWNSVVSEFCIFLLWGLFIGYTAAMEYTDERKREQQTK 161 P +V + CIF+L+G+FI Y+ + E + + E K Sbjct: 118 PKETVTTTICIFILYGVFISYSVSFEANNVNQGEDTEK 155 >A8FF32.1 A8FF32_BACP2 Hypothetical membrane protein Length = 175 Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 8/160 (5%) Query: 1 MSKSLKQKSEHTNPFVFSIEL-------GFFAGFIWGGVRWLIYVLHFTKVIPGFLAEPF 53 M + K+ E N V + L GF G WG + +L ++ HF++V P L +PF Sbjct: 1 MKRDEKKNQEEKNQSVQTSSLVARAAATGFVGGVFWGFIGFLTHMFHFSEVSPNMLLQPF 60 Query: 54 FKHEFLMTPAGHLLGYLCFIVFSVVASVLYVLILRKLKGPWPGMIFGVLCWSAIFLAGSW 113 E+ G + + V SV A+ +Y +L+++KG W G+I+G + W +F + Sbjct: 61 VLGEWKKGGLGTFISIVLLGVLSVGAAFIYYGLLKRIKGYWMGLIYGAILWLLVFYVFNP 120 Query: 114 QFLQQKMFR-LPWNSVVSEFCIFLLWGLFIGYTAAMEYTD 152 F K + L ++VV+ FC+++L+G+F+GY+ + EY + Sbjct: 121 IFPDVKQVQDLQQSTVVTTFCLYILYGMFVGYSISFEYNE 160 >P54516.1 YQHR_BACSU Uncharacterized protein yqhR Length = 178 Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 79/132 (59%), Gaps = 1/132 (0%) Query: 22 GFFAGFIWGGVRWLIYVLHFTKVIPGFLAEPFFKHEFLMTPAGHLLGYLCFIVFSVVASV 81 GF G +W V ++ Y+ HF+++ P + +PF E+ G ++ + V S+ A+ Sbjct: 32 GFCGGVLWSFVAYIAYLFHFSEISPNMILQPFVLGEWKKHGLGTVISIILIGVISIGAAF 91 Query: 82 LYVLILRKLKGPWPGMIFGVLCWSAIFLAGSWQFLQ-QKMFRLPWNSVVSEFCIFLLWGL 140 LY L+L++LK WPG+++G++ W +F + F + + L +++++ CI+LL+GL Sbjct: 92 LYFLLLKRLKTMWPGILYGLVLWLLVFFVFNPIFPDVRTVTELTSDTIITTICIYLLYGL 151 Query: 141 FIGYTAAMEYTD 152 F+GY+ + EY + Sbjct: 152 FVGYSISFEYNE 163 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.145 0.492 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 987,420,034 Number of extensions: 38988116 Number of successful extensions: 116901 Number of sequences better than 1.0e-05: 97 Number of HSP's gapped: 116656 Number of HSP's successfully gapped: 97 Length of query: 163 Length of database: 3,060,696,203 Length adjustment: 123 Effective length of query: 40 Effective length of database: 1,901,911,358 Effective search space: 76076454320 Effective search space used: 76076454320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 125 (52.8 bits)