BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0063.p (315 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK23.1 B3KK23_9BACI Putative uncharacterized protein 455 e-126 B1DFJ4.1 B1DFJ4_9BACL Putative uncharacterized protein 410 e-113 C0ZBX7.1 C0ZBX7_BREBN Conserved hypothetical membrane protein 357 6e-97 Q9K947.1 Q9K947_BACHD BH2803 protein 326 2e-87 C5D489.1 C5D489_9BACI Putative uncharacterized protein 308 3e-82 >B3KK23.1 B3KK23_9BACI Putative uncharacterized protein Length = 330 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 227/315 (72%), Positives = 263/315 (83%), Gaps = 4/315 (1%) Query: 1 MFGGKHINVTAVRRKNGEITFLEVPRSDKSWVVKLRRIPLLRGLVSIIDSSAKGSKHLNY 60 MFGGKH+NVTAVRRKN EI FLEVPR DK+WV KLR+IPLLRG+VS+IDS+ KGSKHLNY Sbjct: 20 MFGGKHVNVTAVRRKNNEIKFLEVPREDKAWVRKLRKIPLLRGIVSLIDSTIKGSKHLNY 79 Query: 61 SAESYAEDETEPEDXXXXXXXXXXXXXGWSLGMIFGVAIMGILSFLVGKLIFTLVPVFVE 120 SA++YA+D E GWSL MI GVA + +LSF+ GKL+FTLVPVFVE Sbjct: 80 SADAYADDTLE---PEEREKQKEKEDSGWSLSMIIGVAAVSVLSFVFGKLLFTLVPVFVE 136 Query: 121 NFLFKNAFDNYILHNLVEGGIKLVLLLVYLWAISQTPVVKRLFQYHGAEHKVISAFEAGE 180 +F F + FD+YI+HNL+EG IKL+LLLVYLWAISQTPV+KRLFQYHGAEHKVISAFEAGE Sbjct: 137 DFFFGDTFDHYIVHNLIEGVIKLILLLVYLWAISQTPVIKRLFQYHGAEHKVISAFEAGE 196 Query: 181 ELTVANVQKYSRLHYRCGSSFMMLTIILGVIIYSVFPWDNLVERVVQRIVLLPVVIGISF 240 ELTV NVQKY+RLHYRCGSSFMMLTI+LGV++YSV PWD + +RV+QRI LLPVV+G+SF Sbjct: 197 ELTVKNVQKYTRLHYRCGSSFMMLTIVLGVVVYSVVPWDTMTQRVIQRIALLPVVLGVSF 256 Query: 241 EVLKGTNAVRDIPGLKYLGYPGLWLQLLTTKEPKDEMVEVSIASFNRMRELDAAIEAGAY 300 E LK TNA+RD+P L++LGYPGLWLQLLTTKEP D+ VEVSIASFNRMRELDA E Sbjct: 257 EFLKLTNAMRDLPVLRFLGYPGLWLQLLTTKEPTDDQVEVSIASFNRMRELDAQYE-NVT 315 Query: 301 TEASVSGGILDPAKG 315 SV+G +LDPAKG Sbjct: 316 VHQSVTGSVLDPAKG 330 >B1DFJ4.1 B1DFJ4_9BACL Putative uncharacterized protein Length = 306 Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/301 (65%), Positives = 237/301 (78%), Gaps = 2/301 (0%) Query: 1 MFGGKHINVTAVRRKNGEITFLEVPRSDKSWVVKLRRIPLLRGLVSIIDSSAKGSKHLNY 60 MF GKH+NVTAVRRKN EI F EVPR+ + W+ L+RIPL+RG V IIDSSAKGS+HLN+ Sbjct: 6 MFAGKHVNVTAVRRKNDEIVFYEVPRTTQRWIQILKRIPLVRGFVGIIDSSAKGSQHLNF 65 Query: 61 SAESYAEDETEPEDXXXXXXXXXXXXXGWSLGMIFGVAIMGILSFLVGKLIFTLVPVFVE 120 S E+YAEDET GWSLGMI GVA G++SF+ GKL+ T P +E Sbjct: 66 SMEAYAEDETSDMSETEKAAAQKKEKSGWSLGMIVGVAAAGVISFIFGKLLLTAAPAAIE 125 Query: 121 NFLFKNAFDNYILHNLVEGGIKLVLLLVYLWAISQTPVVKRLFQYHGAEHKVISAFEAGE 180 + LF+N F+N + HNL+EG IKL++LL YL+ +S TP++KRLFQYHGAEHKVISA+EAGE Sbjct: 126 SLLFENVFENKVGHNLLEGLIKLIMLLAYLYLMSMTPIIKRLFQYHGAEHKVISAYEAGE 185 Query: 181 ELTVANVQKYSRLHYRCGSSFMMLTIILGVIIYS--VFPWDNLVERVVQRIVLLPVVIGI 238 ELTVANVQKYSRLHYRCGSSF++ T+I+GVIIYS +F W + ERV RI+LLPV +GI Sbjct: 186 ELTVANVQKYSRLHYRCGSSFIIFTVIVGVIIYSLPIFEWHTIWERVYIRILLLPVTLGI 245 Query: 239 SFEVLKGTNAVRDIPGLKYLGYPGLWLQLLTTKEPKDEMVEVSIASFNRMRELDAAIEAG 298 S+EVL+ TNA+RD+P L+YLGYPGLWLQLLTTKEPKD+ V VSIASFNRMRELD + Sbjct: 246 SYEVLRWTNALRDVPVLRYLGYPGLWLQLLTTKEPKDDQVAVSIASFNRMRELDKQMSIK 305 Query: 299 A 299 A Sbjct: 306 A 306 >C0ZBX7.1 C0ZBX7_BREBN Conserved hypothetical membrane protein Length = 311 Score = 357 bits (917), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 168/292 (57%), Positives = 223/292 (76%), Gaps = 11/292 (3%) Query: 1 MFGGKHINVTAVRRKNGEITFLEVPRSDKSWVVKLRRIPLLRGLVSIIDSSAKGSKHLNY 60 MFGGK VTAVR+KN EI + E PRS+ W+ L++IP LRG+V ++++SA G+KHLN+ Sbjct: 19 MFGGKTTTVTAVRKKNHEIEYFESPRSEYKWITTLKKIPFLRGIVGLVEASANGAKHLNF 78 Query: 61 SAESYAEDETEPEDXXXXXXXXXXXXXGWSLGMIFGVAIMGILSFLVGKLIFTLVPVFVE 120 ++E Y+++ E L MI GVA++G+LSFL GK +FTLVPVF+ Sbjct: 79 ASEQYSKESGEEASESPS-----------KLTMILGVAVVGVLSFLFGKFVFTLVPVFLA 127 Query: 121 NFLFKNAFDNYILHNLVEGGIKLVLLLVYLWAISQTPVVKRLFQYHGAEHKVISAFEAGE 180 +FL + + L EGG K++LLL Y+ AI+QTP++KRLFQYHGAEHKVI+AFE+G Sbjct: 128 DFLLGKWVPDGVPQTLAEGGFKILLLLGYITAIAQTPLIKRLFQYHGAEHKVINAFESGV 187 Query: 181 ELTVANVQKYSRLHYRCGSSFMMLTIILGVIIYSVFPWDNLVERVVQRIVLLPVVIGISF 240 ELTVANVQK+S LHYRCGSSF++ ++ +GV+IYS+F +D+L ERVVQRIVLLP+VIG+S+ Sbjct: 188 ELTVANVQKFSALHYRCGSSFLIFSVFVGVVIYSLFSYDSLTERVVQRIVLLPLVIGVSY 247 Query: 241 EVLKGTNAVRDIPGLKYLGYPGLWLQLLTTKEPKDEMVEVSIASFNRMRELD 292 EVL+ TN +RD+P L+YLGYPGLWLQ +TT+EP D VEV+IASF +MRELD Sbjct: 248 EVLQWTNKLRDVPVLRYLGYPGLWLQKITTREPDDSQVEVAIASFQKMRELD 299 >Q9K947.1 Q9K947_BACHD BH2803 protein Length = 325 Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 160/304 (52%), Positives = 215/304 (70%), Gaps = 8/304 (2%) Query: 1 MFGGKHINVTAVRRKNGEITFLEVPRSDKSWVVKLRRIPLLRGLVSIIDSSAKGSKHLNY 60 MFGGKH +T +RR +G +LEV + K W+ L++IP +RG+V I+++S+ G+KHLN+ Sbjct: 19 MFGGKHTTLTTIRRIDGSYDYLEVKKETKPWIQSLKKIPFIRGVVGILEASSYGTKHLNF 78 Query: 61 SAESYAEDETEPEDXXXXXXXXXXXXXGWSLGMIFGVAIMGILSFLVGKLIFTLVPVFVE 120 S + Y D E + L MIFGVA +GILSFL GK IFTLVPVF+ Sbjct: 79 STDRYEVDPKEDDQIVPEEKKS-------KLAMIFGVAAIGILSFLFGKFIFTLVPVFLA 131 Query: 121 NFLFKNAFDNYILHNLVEGGIKLVLLLVYLWAISQTPVVKRLFQYHGAEHKVISAFEAGE 180 L F ++ NL+EG KL+LLL Y++AIS TP+++++FQYHGAEHKVI+A+E G Sbjct: 132 ETL-SFLFPGHVAQNLLEGLFKLILLLTYIYAISFTPLIRKVFQYHGAEHKVINAYERGL 190 Query: 181 ELTVANVQKYSRLHYRCGSSFMMLTIILGVIIYSVFPWDNLVERVVQRIVLLPVVIGISF 240 LTV NVQ+ SRLHYRCGSSF++ T+I+GV +Y + P+DNL ERV+ R+ LLPVV+G S+ Sbjct: 191 PLTVENVQQQSRLHYRCGSSFILFTVIVGVFVYLLVPFDNLWERVIHRLALLPVVLGTSY 250 Query: 241 EVLKGTNAVRDIPGLKYLGYPGLWLQLLTTKEPKDEMVEVSIASFNRMRELDAAIEAGAY 300 EVL+ TN VR +P L++LGYPGLWLQLLTTKEPKD+ VEV+I SF M + + + EA Sbjct: 251 EVLQLTNKVRHVPVLRFLGYPGLWLQLLTTKEPKDDQVEVAIHSFEEMLKREQSYEASLS 310 Query: 301 TEAS 304 +S Sbjct: 311 APSS 314 >C5D489.1 C5D489_9BACI Putative uncharacterized protein Length = 314 Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 155/297 (52%), Positives = 205/297 (69%), Gaps = 7/297 (2%) Query: 1 MFGGKHINVTAVRRKNGEITFLEVPRSDKSWVVKLRRIPLLRGLVSIIDSSAKGSKHLNY 60 MF GK +VTA+RRK+ I + +PR V L++IP +RG+V+II++SA G+KHL + Sbjct: 19 MFAGKIYSVTAIRRKDHSIEYFRLPRQTNPTVAFLKKIPFIRGIVAIIEASANGAKHLQF 78 Query: 61 SAESYAEDETEPEDXXXXXXXXXXXXXGWSLGMIFGVAIMGILSFLVGKLIFTLVPVFVE 120 ++E Y D E + L ++ GVA++G+LSFL K IFTLVPVF+ Sbjct: 79 ASERYELDPNEEQALPKTKTDSS------KLSLVLGVAVIGVLSFLFAKTIFTLVPVFLA 132 Query: 121 NFLFKNAFDNYILHNLVEGGIKLVLLLVYLWAISQTPVVKRLFQYHGAEHKVISAFEAGE 180 L K F + VEG KL LLL Y++ IS TP++KR+FQYHGAEHKVI+AFEAG Sbjct: 133 ASL-KPLFPTKMAQIFVEGAFKLALLLAYIYFISLTPLIKRVFQYHGAEHKVINAFEAGL 191 Query: 181 ELTVANVQKYSRLHYRCGSSFMMLTIILGVIIYSVFPWDNLVERVVQRIVLLPVVIGISF 240 LTV NVQ+ SRLHYRCGSSF++ T+I+G+ +Y P D L RVV R+ L+PVV+GISF Sbjct: 192 PLTVENVQRSSRLHYRCGSSFILFTVIVGLFVYMFVPTDPLWLRVVNRLALIPVVLGISF 251 Query: 241 EVLKGTNAVRDIPGLKYLGYPGLWLQLLTTKEPKDEMVEVSIASFNRMRELDAAIEA 297 EVL+ TN +R+IP L++LGYPGLWLQLLTTKEP D+ VEV+IASF + L+ +E Sbjct: 252 EVLQFTNKLRNIPVLRWLGYPGLWLQLLTTKEPTDDQVEVAIASFQELLRLEKNVET 308 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.140 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,781,031,551 Number of extensions: 69259344 Number of successful extensions: 201611 Number of sequences better than 1.0e-05: 275 Number of HSP's gapped: 201009 Number of HSP's successfully gapped: 275 Length of query: 315 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 180 Effective length of database: 1,788,859,178 Effective search space: 321994652040 Effective search space used: 321994652040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)