BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0060.p (331 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK20.1 B3KK20_9BACI Putative uncharacterized protein 456 e-126 C0Z8S4.1 C0Z8S4_BREBN Putative uncharacterized protein 447 e-124 A8MM80.1 A8MM80_ALKOO Putative uncharacterized protein 367 e-100 B4AG05.1 B4AG05_BACPU Putative uncharacterized protein 362 2e-98 C2W869.1 C2W869_BACCE Putative uncharacterized protein 361 5e-98 >B3KK20.1 B3KK20_9BACI Putative uncharacterized protein Length = 518 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/331 (63%), Positives = 259/331 (78%), Gaps = 3/331 (0%) Query: 1 LLDKLQKTGFNAVFVQVRPSGDSLYPSVLVPWSKVLTGSQGKNPGYDPLEFMISAAHSRG 60 LLD LQ G N V+VQVRP+GD+LYPS +VPWSKVLTG QG +PGYDP+ FM+ H R Sbjct: 190 LLDSLQDVGINTVYVQVRPAGDALYPSTMVPWSKVLTGIQGADPGYDPVAFMVEETHRRN 249 Query: 61 MQFHAWFNPFRATTDANTANLAGNHVAKAHPEWIVKADSKLYINPGIPEARQHIIDTVME 120 M+FHAWFNPFRA TD TA+L +HVA +HP+WIV +LYINPGIPEARQHIIDT+ME Sbjct: 250 MEFHAWFNPFRANTDILTASLHPSHVALSHPDWIVNTGKQLYINPGIPEARQHIIDTIME 309 Query: 121 VVKGYDIDGVHLDDYFYPSGS-FADDEAFKTYNSKSISSKGDWRRDNINDFISRLGQSIH 179 VV GYDIDG+HLDDYFYPS + F DD A++ +N+ + ++ DWRR NIN F+ LG+SIH Sbjct: 310 VVNGYDIDGIHLDDYFYPSNTVFNDDAAYREFNNGAYANLADWRRGNINAFVQSLGESIH 369 Query: 180 GVKSDVSFGVSPFGVWRNKKADSTGSDTTAGVSAYDDMYADTRTWIRSGWIDYIAPQIYW 239 VK DV +G+SPFGVWRN+ D TGSDT AGV+AYD MYAD RTWI++GWIDY+APQIYW Sbjct: 370 RVKPDVEYGISPFGVWRNQSVDKTGSDTKAGVTAYDSMYADVRTWIQNGWIDYVAPQIYW 429 Query: 240 SLSFNAARYDKLVDWWVNEVKGSGVKLYIGQATYKVGTDKSAEWQSSEQIINQLKYNEKY 299 S+S AA YDKLVDWW +EV+G+GV L IG A YK+GT + WQS+ +IINQLKYN+ + Sbjct: 430 SMSNPAADYDKLVDWWASEVQGTGVDLLIGHAPYKLGTSEIG-WQSASEIINQLKYNQNH 488 Query: 300 NEVAGSIMFRANDIVSRDPFGLNSLLTFYFK 330 EV GSI FRA +I+S +P G+ L Y++ Sbjct: 489 AEVKGSIFFRAENILS-NPLGIKDQLQSYYR 518 >C0Z8S4.1 C0Z8S4_BREBN Putative uncharacterized protein Length = 540 Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust. Identities = 217/330 (65%), Positives = 253/330 (76%), Gaps = 3/330 (0%) Query: 1 LLDKLQKTGFNAVFVQVRPSGDSLYPSVLVPWSKVLTGSQGKNPGYDPLEFMISAAHSRG 60 LLD+LQ G NA FVQVRPSGD+LYPS L PWS+ LTG+ GK+PGYDPL FM+ H RG Sbjct: 211 LLDELQAMGMNAAFVQVRPSGDALYPSTLTPWSRFLTGTPGKDPGYDPLAFMVQETHRRG 270 Query: 61 MQFHAWFNPFRATTDANTANLAGNHVAKAHPEWIVKADSKLYINPGIPEARQHIIDTVME 120 MQFHAWFNPFRATTDA T L NHV K HP+WIV A+ KLYINPG+P ARQ II+ VME Sbjct: 271 MQFHAWFNPFRATTDAKTDQLPANHVIKQHPDWIVNANKKLYINPGVPAARQQIINEVME 330 Query: 121 VVKGYDIDGVHLDDYFYPSG-SFADDEAFKTYNSKSISSKGDWRRDNINDFISRLGQSIH 179 VV+ YDIDGVHLDDYFYPS +FADD AFK YNSK I SK DWRRDNIN F+ ++ QSI Sbjct: 331 VVQRYDIDGVHLDDYFYPSNVAFADDAAFKAYNSKKIVSKADWRRDNINQFVQQMNQSIK 390 Query: 180 GVKSDVSFGVSPFGVWRNKKADSTGSDTTAGVSAYDDMYADTRTWIRSGWIDYIAPQIYW 239 VK V FG+SPFGVWRN D TGSDT AGV+AYD M+AD RTWI+ GWIDY+ PQIYW Sbjct: 391 SVKPHVQFGISPFGVWRNSNVDPTGSDTKAGVTAYDHMFADVRTWIQQGWIDYVTPQIYW 450 Query: 240 SLSFNAARYDKLVDWWVNEVKGSGVKLYIGQATYKVGTDKSAEWQSSEQIINQLKYNEKY 299 S SF A+YDKLV WW NEV+G+ VKLYIG + YK+GT + A WQS+++IINQL +N Sbjct: 451 SFSFAPAQYDKLVTWWANEVQGTNVKLYIGHSPYKLGTAE-AGWQSAQEIINQLNFNAMV 509 Query: 300 NEVAGSIMFRANDIVSRDPFGLNSLLTFYF 329 +V GSI F A D+ ++P GL L+ Y+ Sbjct: 510 PQVQGSIFFSAKDL-RKNPLGLLPALSSYY 538 >A8MM80.1 A8MM80_ALKOO Putative uncharacterized protein Length = 476 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/334 (51%), Positives = 227/334 (67%), Gaps = 6/334 (1%) Query: 1 LLDKLQKTGFNAVFVQVRPSGDSLYPSVLVPWSKVLTGSQGKNPGYDPLEFMISAAHSRG 60 LLD L+ G NAV VQ++PS DS YPS PWS+ LTG QGK+PGY+PL FMI H R Sbjct: 144 LLDGLKSAGLNAVMVQIKPSADSFYPSQYGPWSEYLTGVQGKDPGYNPLAFMIEETHKRN 203 Query: 61 MQFHAWFNPFRATTDANTANLAGNHVAKAHPEWIVKADSKLYINPGIPEARQHIIDTVME 120 M+FHAWFNP+R + + LA H AK +P+W+V KL+ NPGIP +Q +ID+++E Sbjct: 204 MEFHAWFNPYRVSVKEDRNALAEGHPAKKNPDWVVSYGGKLFYNPGIPAVQQFVIDSILE 263 Query: 121 VVKGYDIDGVHLDDYFYP----SGSFADDEAFKTYNSKSISSKGDWRRDNINDFISRLGQ 176 VVK Y+IDGVHLDDYFYP G F D+E +++Y + +K WRR+NINDFI L Q Sbjct: 264 VVKNYNIDGVHLDDYFYPYPEKEGDFPDEELYQSYRRTASETKEQWRRNNINDFIQNLYQ 323 Query: 177 SIHGVKSDVSFGVSPFGVWRNKKADSTGSDTTAGVSAYDDMYADTRTWIRSGWIDYIAPQ 236 SI KS V GVSPFG+WRNK D GS+T GV++YD +YADT+ WI +GW+DYIAPQ Sbjct: 324 SIKREKSTVVLGVSPFGIWRNKADDPKGSNTRGGVTSYDSLYADTKYWIENGWLDYIAPQ 383 Query: 237 IYWSLSFNAARYDKLVDWWVNEVKGSGVKLYIGQATYKVGTDKSAEWQSSEQIINQLKYN 296 +YW + ++ A Y +L++WW N V+ V+LYIGQA YKV + W + +I++Q++YN Sbjct: 384 VYWHIGYDRAEYKELINWWSNVVQNKKVELYIGQAAYKVEAG-TTPWGNPLEILDQIEYN 442 Query: 297 EKYNEVAGSIMFRANDIVSRDPFGLNSLLTFYFK 330 EV GSI FRA IV+ +P GL L +K Sbjct: 443 RMIPEVKGSIFFRAKSIVN-NPLGLKDNLEKMYK 475 >B4AG05.1 B4AG05_BACPU Putative uncharacterized protein Length = 515 Score = 362 bits (930), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 165/330 (50%), Positives = 225/330 (68%), Gaps = 6/330 (1%) Query: 1 LLDKLQKTGFNAVFVQVRPSGDSLYPSVLVPWSKVLTGSQGKNPGYDPLEFMISAAHSRG 60 LLD+++ NAV +Q++P+ D+ YPS PWS+ LTG+QGK+PGYDPLEFMI AH RG Sbjct: 75 LLDEIKAMNMNAVIMQIKPTADAFYPSAYGPWSEYLTGTQGKDPGYDPLEFMIEEAHKRG 134 Query: 61 MQFHAWFNPFRATTD-ANTANLAGNHVAKAHPEWIVKADSKLYINPGIPEARQHIIDTVM 119 ++FHAWFNP+R T + + + L+ +H AK HP+W + ++LY NPGIP+A++ I+ + Sbjct: 135 LEFHAWFNPYRITMNHTDLSRLSADHPAKKHPDWTIAYGNQLYFNPGIPKAQEFIVGGIE 194 Query: 120 EVVKGYDIDGVHLDDYFYPSG----SFADDEAFKTYNSKSISSKGDWRRDNINDFISRLG 175 EVVK YDID VH+DDYFYP+ F D E ++TY K+ + DWRRDN+N + ++ Sbjct: 195 EVVKNYDIDAVHMDDYFYPNKIAGVPFPDQETYETYGKKAFTHIEDWRRDNVNQLVKQIN 254 Query: 176 QSIHGVKSDVSFGVSPFGVWRNKKADSTGSDTTAGVSAYDDMYADTRTWIRSGWIDYIAP 235 ++ VK V FG+SPFGVWRN K D +GS+TTAG++ YDD+YADTR WI+ IDY+ P Sbjct: 255 DTVKKVKPYVKFGISPFGVWRNIKDDPSGSNTTAGMTNYDDLYADTREWIQQHDIDYVTP 314 Query: 236 QIYWSLSFNAARYDKLVDWWVNEVKGSGVKLYIGQATYKVGTDKSAEWQSSEQIINQLKY 295 QIYWS+ F AA YD L WW NEVKG V LYIGQATYK+ + W E+ Q++ Sbjct: 315 QIYWSIGFQAAAYDVLTKWWSNEVKGEPVHLYIGQATYKINQNSDPAWSDPEEYFRQIQL 374 Query: 296 NEKYNEVAGSIMFRANDIVSRDPFGLNSLL 325 N + V GS+ F DI +R+P + + L Sbjct: 375 NRQSPLVQGSMHFSLKDI-NRNPLNVKNRL 403 >C2W869.1 C2W869_BACCE Putative uncharacterized protein Length = 472 Score = 361 bits (926), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 167/330 (50%), Positives = 218/330 (66%), Gaps = 6/330 (1%) Query: 1 LLDKLQKTGFNAVFVQVRPSGDSLYPSVLVPWSKVLTGSQGKNPGYDPLEFMISAAHSRG 60 LLD ++ G NAV +Q++P+ D+ YPS PWS+ LTG QGK+PGYDPL FM+ AH R Sbjct: 24 LLDDVKNVGMNAVVMQIKPTADAFYPSQYGPWSEYLTGVQGKDPGYDPLAFMVEEAHKRN 83 Query: 61 MQFHAWFNPFRATTD-ANTANLAGNHVAKAHPEWIVKADSKLYINPGIPEARQHIIDTVM 119 ++FHAWFNP+R T + N LA NH AK HP+W+V KLY NPGIPE + I + ++ Sbjct: 84 LEFHAWFNPYRITMNHTNLNQLAENHPAKQHPDWVVSYGGKLYYNPGIPEVKNFITEGIL 143 Query: 120 EVVKGYDIDGVHLDDYFYP----SGSFADDEAFKTYNSKSISSKGDWRRDNINDFISRLG 175 EVV+ YDID VH+DDYFYP F D +KTYN+ S+ GDWRRDN+N +S L Sbjct: 144 EVVQNYDIDAVHMDDYFYPYKVTGEEFPDQNTYKTYNNGKFSNIGDWRRDNVNQLVSGLN 203 Query: 176 QSIHGVKSDVSFGVSPFGVWRNKKADSTGSDTTAGVSAYDDMYADTRTWIRSGWIDYIAP 235 +I KS V FG+SPFGVWRN D TGS+TTAG YDD+YADTR WI+ G+IDYI P Sbjct: 204 TAIKQEKSYVKFGISPFGVWRNIADDPTGSNTTAGQRNYDDLYADTREWIQKGYIDYITP 263 Query: 236 QIYWSLSFNAARYDKLVDWWVNEVKGSGVKLYIGQATYKVGTDKSAEWQSSEQIINQLKY 295 QIYW++ F A YD L+DWWV E + + LYIGQA YK+ + W E+ Q+ Sbjct: 264 QIYWNIGFTPAAYDVLLDWWVKETENKPIHLYIGQAAYKINNNSVPAWSDPEEYPRQITL 323 Query: 296 NEKYNEVAGSIMFRANDIVSRDPFGLNSLL 325 N +++++ GS+ F DI + +P G+ L Sbjct: 324 NHQFSQIKGSMHFSLKDI-NNNPLGIKDRL 352 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,123,729,617 Number of extensions: 90424821 Number of successful extensions: 203498 Number of sequences better than 1.0e-05: 481 Number of HSP's gapped: 202264 Number of HSP's successfully gapped: 482 Length of query: 331 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 195 Effective length of database: 1,779,438,163 Effective search space: 346990441785 Effective search space used: 346990441785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)