BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0350.0059.p
         (208 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KK20.1 B3KK20_9BACI Putative uncharacterized protein                137   4e-31
C0Z8S4.1 C0Z8S4_BREBN Putative uncharacterized protein                107   8e-22
B1I3U1.1 B1I3U1_DESAP Copper amine oxidase domain protein             100   1e-19
Q0Q0I6.2 Q0Q0I6_9FIRM Putative uncharacterized protein orf311          94   8e-18
Q67M54.1 Q67M54_SYMTH Conserved domain protein                         92   2e-17

>B3KK20.1 B3KK20_9BACI Putative uncharacterized protein
          Length = 518

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 92/126 (73%), Gaps = 1/126 (0%)

Query: 5   QAAAVPITIELDGVTLNSEVPPFITAS-GVTMVPVGVISKGLGAAVEWNQSNKTATISKG 63
           QA A  I+I LDGV LNS+V P+I     VTMVP  +IS+GLGA+V WNQ +KT TI K 
Sbjct: 25  QAKAARISIHLDGVNLNSDVSPYILPKVNVTMVPTRIISEGLGASVAWNQKSKTVTIGKD 84

Query: 64  ENVLKLTSGKKTADVGGTPVALDTSVQIVQGRVTVPLRFVSEQLGLQVVWNQATKHIALY 123
            + L+LTSGKKTA V G+ VALD SV+I  GRV VPLRF+SE LG+QV WNQA + I+L 
Sbjct: 85  GSSLQLTSGKKTALVNGSSVALDASVEIKNGRVMVPLRFISENLGVQVEWNQAAQRISLS 144

Query: 124 SNTEIV 129
           + + +V
Sbjct: 145 TGSVVV 150


>C0Z8S4.1 C0Z8S4_BREBN Putative uncharacterized protein
          Length = 540

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 77/124 (62%), Gaps = 3/124 (2%)

Query: 4   VQAAAVP--ITIELDGVTLNSEVPPFITASG-VTMVPVGVISKGLGAAVEWNQSNKTATI 60
           VQAA     I+I LDG  + S+V P+I     VTMVP+ VI + LGA V W   ++TATI
Sbjct: 24  VQAAQTSSGISIYLDGQQIKSDVAPYIVPKADVTMVPMRVIGENLGAEVNWEPKSQTATI 83

Query: 61  SKGENVLKLTSGKKTADVGGTPVALDTSVQIVQGRVTVPLRFVSEQLGLQVVWNQATKHI 120
           SK + +L LT  +K A V    + LD SVQ  QGR+ VPLRFVSEQLGL V W   T+ I
Sbjct: 84  SKQDTLLSLTVNQKNARVNNNSIPLDASVQNKQGRIMVPLRFVSEQLGLAVNWEDKTRTI 143

Query: 121 ALYS 124
            L S
Sbjct: 144 RLQS 147


>B1I3U1.1 B1I3U1_DESAP Copper amine oxidase domain protein
          Length = 478

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 75/123 (60%), Gaps = 1/123 (0%)

Query: 3   GVQAAAVPITIELDGVTLNSEVPPFITASGVTMVPVGVISKGLGAAVEWNQSNKTATISK 62
           G+  A   ITI +DG  L+ + PP I   G T+VP+  I + LGA V W++  +T T SK
Sbjct: 25  GILPAEAAITITIDGERLSGDTPPVIEG-GYTLVPLRTIFEALGAEVHWDEKTRTVTGSK 83

Query: 63  GENVLKLTSGKKTADVGGTPVALDTSVQIVQGRVTVPLRFVSEQLGLQVVWNQATKHIAL 122
           G   +KL  G+KTA V G PV LD + +++ GR  VPLRF+ E LG +V WN A + + +
Sbjct: 84  GTATVKLVIGEKTAYVSGKPVTLDVAGKMINGRTMVPLRFIGEALGAKVDWNGAQRMVVI 143

Query: 123 YSN 125
            ++
Sbjct: 144 RTD 146


>Q0Q0I6.2 Q0Q0I6_9FIRM Putative uncharacterized protein orf311
          Length = 311

 Score = 94.0 bits (232), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%)

Query: 12  TIELDGVTLNSEVPPFITASGVTMVPVGVISKGLGAAVEWNQSNKTATISKGENVLKLTS 71
           T+ +DG  L  +VPP I  +G T+VPV  IS  LGA V W+ + +T  I K +N ++L  
Sbjct: 26  TVTVDGQALAFDVPPII-ENGRTLVPVRAISTALGANVNWDVATQTVIIQKADNNIRLPL 84

Query: 72  GKKTADVGGTPVALDTSVQIVQGRVTVPLRFVSEQLGLQVVWNQATKHIALYSNTE 127
           G + A   G P+ LD   +I+Q R  VPLRFVSE LG  VVW+ +T+ IA+ +  E
Sbjct: 85  GGQ-ATKNGNPMDLDVPAKIIQDRTMVPLRFVSEALGCHVVWHDSTQTIAITAQAE 139


>Q67M54.1 Q67M54_SYMTH Conserved domain protein
          Length = 382

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 72/111 (64%), Gaps = 1/111 (0%)

Query: 15  LDGVTLNSEVPPFITASGVTMVPVGVISKGLGAAVEWNQSNKTATISKGENVLKLTSGKK 74
           +DGV + ++V P +  +  T+VP+  +++ LG  VEW+Q  +TAT++KGE  ++LT G  
Sbjct: 30  VDGVEVQTDVAPVLE-NDRTLVPIRAVTEALGFEVEWDQETRTATLTKGETTIQLTVGSP 88

Query: 75  TADVGGTPVALDTSVQIVQGRVTVPLRFVSEQLGLQVVWNQATKHIALYSN 125
            A V G  VALD +  IV  R+ VP+RFV+E++GL V W Q T+ + + S 
Sbjct: 89  EAVVNGEKVALDVAPFIVSDRMMVPVRFVAEEIGLLVDWEQETRTVLITSQ 139


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,023,110,640
Number of extensions: 34663913
Number of successful extensions: 69054
Number of sequences better than 1.0e-05: 209
Number of HSP's gapped: 68882
Number of HSP's successfully gapped: 209
Length of query: 208
Length of database: 3,060,696,203
Length adjustment: 130
Effective length of query: 78
Effective length of database: 1,835,964,253
Effective search space: 143205211734
Effective search space used: 143205211734
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)