BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0350.0058.p
         (136 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KK19.1 B3KK19_9BACI Iron dependent repressor                        238   1e-61
B1DFK0.1 B1DFK0_9BACL Iron (Metal) dependent repressor, DtxR family   221   2e-56
C0ZBX4.1 C0ZBX4_BREBN Transcriptional regulator MntR                  205   1e-51
C3FQA1.1 C3FQA1_BACTB Transcriptional regulator mntR                  196   6e-49
C3D6X0.1 C3D6X0_BACTU Transcriptional regulator mntR                  196   6e-49

>B3KK19.1 B3KK19_9BACI Iron dependent repressor
          Length = 141

 Score =  238 bits (608), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/136 (87%), Positives = 129/136 (94%)

Query: 1   MEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKDEYLIYEKYRGLVLTSK 60
           MEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKDEYLIYEKYRGLVLTSK
Sbjct: 6   MEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKDEYLIYEKYRGLVLTSK 65

Query: 61  GKKVGKRLVDRHQLLEEFLGLIGVQQEHIYKDVEGIEHHLSWDSITRIETLVEYFRRDEA 120
           GKK+GKRL++RH LLEEFL +IGVQ E+IY+DVEGIEHHLSWDSITRIETLVEYF+RDE 
Sbjct: 66  GKKMGKRLMERHHLLEEFLEMIGVQDENIYRDVEGIEHHLSWDSITRIETLVEYFKRDEN 125

Query: 121 RLQTLYDIHLELVSDS 136
           RLQ L D+H ELV++S
Sbjct: 126 RLQDLRDVHNELVNES 141


>B1DFK0.1 B1DFK0_9BACL Iron (Metal) dependent repressor, DtxR family
          Length = 140

 Score =  221 bits (563), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/132 (84%), Positives = 119/132 (90%)

Query: 1   MEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKDEYLIYEKYRGLVLTSK 60
           MEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKD YLIYEKYRGLVLTSK
Sbjct: 6   MEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKDNYLIYEKYRGLVLTSK 65

Query: 61  GKKVGKRLVDRHQLLEEFLGLIGVQQEHIYKDVEGIEHHLSWDSITRIETLVEYFRRDEA 120
           GKK+GKRLVDRH LLE FL +IGVQ+E+IY+DVEGIEHHLSWDSIT IETLVE+F R+ +
Sbjct: 66  GKKMGKRLVDRHHLLESFLTIIGVQEENIYRDVEGIEHHLSWDSITCIETLVEFFNREPS 125

Query: 121 RLQTLYDIHLEL 132
           RL  L  I  EL
Sbjct: 126 RLDELRGIRTEL 137


>C0ZBX4.1 C0ZBX4_BREBN Transcriptional regulator MntR
          Length = 143

 Score =  205 bits (521), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 115/130 (88%)

Query: 1   MEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKDEYLIYEKYRGLVLTSK 60
           MEDYLERIY LI+EKGYARVSDIAE LEVHPSSVTKM+QKLDKD+YL+YEKYRGLVLT K
Sbjct: 7   MEDYLERIYNLIEEKGYARVSDIAEALEVHPSSVTKMVQKLDKDKYLVYEKYRGLVLTPK 66

Query: 61  GKKVGKRLVDRHQLLEEFLGLIGVQQEHIYKDVEGIEHHLSWDSITRIETLVEYFRRDEA 120
           GKK+GKRLVDRH LLEEF+ +IG+ +EHIY+DVEGIEHHLSW+SIT +E LV+YF  D  
Sbjct: 67  GKKIGKRLVDRHALLEEFMRIIGLDEEHIYQDVEGIEHHLSWESITCLEYLVQYFEADPK 126

Query: 121 RLQTLYDIHL 130
           R++ L +I L
Sbjct: 127 RIEELRNIRL 136


>C3FQA1.1 C3FQA1_BACTB Transcriptional regulator mntR
          Length = 163

 Score =  196 bits (497), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 96/125 (76%), Positives = 111/125 (88%)

Query: 1   MEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKDEYLIYEKYRGLVLTSK 60
           MEDY+E+IY LIDEKGYARVSDIAE L VHPSSVTKM+QKLDKDEYLIYEKYRGLVLTSK
Sbjct: 27  MEDYIEQIYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSK 86

Query: 61  GKKVGKRLVDRHQLLEEFLGLIGVQQEHIYKDVEGIEHHLSWDSITRIETLVEYFRRDEA 120
           GKK+G+RLV RH+LLE+F+ +IGV +  IY DVEGIEHHLSW+SI RI  LV+YF +DE 
Sbjct: 87  GKKIGERLVYRHELLEQFMRIIGVDESKIYNDVEGIEHHLSWESIDRIGDLVQYFEQDEV 146

Query: 121 RLQTL 125
           R++TL
Sbjct: 147 RVETL 151


>C3D6X0.1 C3D6X0_BACTU Transcriptional regulator mntR
          Length = 163

 Score =  196 bits (497), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 96/125 (76%), Positives = 111/125 (88%)

Query: 1   MEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKDEYLIYEKYRGLVLTSK 60
           MEDY+E+IY LIDEKGYARVSDIAE L VHPSSVTKM+QKLDKDEYLIYEKYRGLVLTSK
Sbjct: 27  MEDYIEQIYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSK 86

Query: 61  GKKVGKRLVDRHQLLEEFLGLIGVQQEHIYKDVEGIEHHLSWDSITRIETLVEYFRRDEA 120
           GKK+G+RLV RH+LLE+F+ +IGV +  IY DVEGIEHHLSW+SI RI  LV+YF +DE 
Sbjct: 87  GKKIGERLVYRHELLEQFMRIIGVDESKIYNDVEGIEHHLSWESIDRIGDLVQYFEQDEV 146

Query: 121 RLQTL 125
           R++TL
Sbjct: 147 RVETL 151


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.139    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 790,801,514
Number of extensions: 31571384
Number of successful extensions: 97198
Number of sequences better than 1.0e-05: 743
Number of HSP's gapped: 97156
Number of HSP's successfully gapped: 743
Length of query: 136
Length of database: 3,060,696,203
Length adjustment: 100
Effective length of query: 36
Effective length of database: 2,118,594,703
Effective search space: 76269409308
Effective search space used: 76269409308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)