BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0056.p (248 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK18.1 B3KK18_9BACI Cytochrome c biogenesis protein transmembr... 330 8e-89 B1DFK1.1 B1DFK1_9BACL Cytochrome c biogenesis protein transmembr... 276 1e-72 B7GI84.1 B7GI84_ANOFW Cytochrome c biogenesis protein 209 2e-52 Q5L1J5.1 Q5L1J5_GEOKA Cytochrome c biogenesis protein (Holocytoc... 206 1e-51 C5D9L4.1 C5D9L4_9BACI Cytochrome c biogenesis protein transmembr... 202 2e-50 >B3KK18.1 B3KK18_9BACI Cytochrome c biogenesis protein transmembrane region Length = 237 Score = 330 bits (846), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 156/237 (65%), Positives = 193/237 (81%) Query: 12 LSNLNAGIAFAAGVASFISPCCLPLYPSYLSYITGLSVQELKAGSTTRKARFRTISHTLA 71 ++++N GIAFAAG ASFISPCCLPLYPSYLS ITG+SV +LK ++ RFRT++HTLA Sbjct: 1 MADINIGIAFAAGFASFISPCCLPLYPSYLSIITGMSVNDLKNEQNRKEVRFRTMTHTLA 60 Query: 72 FILGLSAVFYTIGFGAGLFGEVFQEQRDLIRKLSAILVMAMGLFLLGIFQPKFLLRERKL 131 FILG SAV+YT+G+GAGLFGE F E +DLIR+LSA+L++ MGL L+GIFQPKFL+++RK Sbjct: 61 FILGFSAVYYTLGWGAGLFGEFFTEYQDLIRQLSALLIIVMGLMLIGIFQPKFLMKDRKF 120 Query: 132 NLKWKPAGYLGSFILGIGFSAGWSPCIGPILTPIIALSASDQGAWFTLITAYCIGFALPF 191 N K KP GY+G+F+ GIGF+AGWSPC+GPILT IIAL+ASD G WF LIT+Y +GFA+PF Sbjct: 121 NFKSKPTGYIGTFLFGIGFAAGWSPCVGPILTAIIALAASDPGTWFPLITSYSLGFAVPF 180 Query: 192 IVLAFFLGGARRILKYSNLLMKVXXXXXXXXXXXXXTDQMFRITIWLQGITPDWLKF 248 +LAFF+G R ILKYS+ LMKV TDQM++ITIWLQGITP+WLKF Sbjct: 181 FILAFFIGSTRWILKYSSTLMKVGGVLMILMGVLLFTDQMYKITIWLQGITPEWLKF 237 >B1DFK1.1 B1DFK1_9BACL Cytochrome c biogenesis protein transmembrane region Length = 238 Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 140/238 (58%), Positives = 177/238 (74%), Gaps = 1/238 (0%) Query: 12 LSNLNAGIAFAAGVASFISPCCLPLYPSYLSYITGLSVQELKAGSTTRKARFRTISHTLA 71 + N+N +AF AG ASFISPCCLPLYPSYLSYITG+SV +LK + T + R RT+SHTL Sbjct: 1 MDNINVWLAFGAGFASFISPCCLPLYPSYLSYITGISVSDLKNNNHTSQMRMRTMSHTLF 60 Query: 72 FILGLSAVFYTIGFGAGLFGEVFQEQRDLIRKLSAILVMAMGLFLLGIFQPKFLLRERKL 131 FILG V+YT+G+G+ +F E F + DLIRKLSAIL++ MGLFL GIFQP+ L++ER+ Sbjct: 61 FILGFCTVYYTLGYGSNVFAEFFSQYEDLIRKLSAILIVLMGLFLAGIFQPQVLMKERRF 120 Query: 132 NLK-WKPAGYLGSFILGIGFSAGWSPCIGPILTPIIALSASDQGAWFTLITAYCIGFALP 190 N K GYLGSFI G+GFSAGW+PCIGP LT I+AL+AS G WF L TAY +GFA+P Sbjct: 121 NFDPTKKTGYLGSFIFGVGFSAGWTPCIGPALTAILALAASKPGTWFELTTAYALGFAIP 180 Query: 191 FIVLAFFLGGARRILKYSNLLMKVXXXXXXXXXXXXXTDQMFRITIWLQGITPDWLKF 248 F +LAFFLG AR +LKYS+++M++ TDQM +ITIWL +TP ++KF Sbjct: 181 FFLLAFFLGSARWLLKYSSVVMRIGGGVMVLMGILLFTDQMTKITIWLNQVTPAFMKF 238 >B7GI84.1 B7GI84_ANOFW Cytochrome c biogenesis protein Length = 243 Score = 209 bits (532), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 105/233 (45%), Positives = 154/233 (66%), Gaps = 2/233 (0%) Query: 9 EATLSNLNAGIAFAAGVASFISPCCLPLYPSYLSYITGLSVQELKAGSTTRKARFRTISH 68 A ++ +AF AGV SFISPCCLPLYP++LSYITG+SV +LK+ + R ++ H Sbjct: 6 SANHMDIQLFVAFGAGVLSFISPCCLPLYPAFLSYITGISVSDLKSDYALLQKR--SLLH 63 Query: 69 TLAFILGLSAVFYTIGFGAGLFGEVFQEQRDLIRKLSAILVMAMGLFLLGIFQPKFLLRE 128 TL F+LG S +F IGFG + G F +DLIR++ AIL++ G ++GIF+P FL+ + Sbjct: 64 TLFFLLGFSFIFIAIGFGTSILGRFFHTYQDLIRQIGAILMVFFGFVIIGIFKPTFLMTD 123 Query: 129 RKLNLKWKPAGYLGSFILGIGFSAGWSPCIGPILTPIIALSASDQGAWFTLITAYCIGFA 188 R+L+ + +P+GY+GSF++G+ F+AGW+PC GPIL +IAL+A++ +TAY +GFA Sbjct: 124 RRLSFQQRPSGYIGSFLIGMAFAAGWTPCTGPILVSVIALAATNPSLGVVYMTAYSLGFA 183 Query: 189 LPFIVLAFFLGGARRILKYSNLLMKVXXXXXXXXXXXXXTDQMFRITIWLQGI 241 LPF++L+FF+G I K+ LMKV D M +ITI++ I Sbjct: 184 LPFLLLSFFIGKMGWIRKHHVKLMKVGGYVMIGMGVVLFFDWMTKITIYMTNI 236 >Q5L1J5.1 Q5L1J5_GEOKA Cytochrome c biogenesis protein (Holocytochrome-c synthase) EC=4.4.1.17 Length = 235 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 98/230 (42%), Positives = 154/230 (66%), Gaps = 2/230 (0%) Query: 12 LSNLNAGIAFAAGVASFISPCCLPLYPSYLSYITGLSVQELKAGSTTRKARFRTISHTLA 71 ++++N +AF AG+ SFISPCCLPLYP++LSYITG+SV E+K + + R I HT Sbjct: 1 MNDINIFLAFGAGLLSFISPCCLPLYPAFLSYITGVSVDEIKKENGMLQKR--AILHTFF 58 Query: 72 FILGLSAVFYTIGFGAGLFGEVFQEQRDLIRKLSAILVMAMGLFLLGIFQPKFLLRERKL 131 F+LG S +F IGFG + G++F + +DLIR++SA+ ++ GL +LG+F P F++++++L Sbjct: 59 FLLGFSVIFIAIGFGTSVIGKLFVDYQDLIRQISALFIVFFGLVILGVFSPSFMMKDKRL 118 Query: 132 NLKWKPAGYLGSFILGIGFSAGWSPCIGPILTPIIALSASDQGAWFTLITAYCIGFALPF 191 + KP+GY GS ++GIGF+AGW+PC GPIL +IAL+A+ A + AY +GFA+PF Sbjct: 119 VFRNKPSGYFGSILIGIGFAAGWTPCTGPILVSVIALAATKPSAAMLYMFAYVLGFAVPF 178 Query: 192 IVLAFFLGGARRILKYSNLLMKVXXXXXXXXXXXXXTDQMFRITIWLQGI 241 +++FF+G I KY+ ++++V D M +I I+ + Sbjct: 179 FIMSFFIGKLNWIKKYNTVIVRVGGILMVIMGIMLFFDWMTKIIIFFTDL 228 >C5D9L4.1 C5D9L4_9BACI Cytochrome c biogenesis protein transmembrane region Length = 235 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 98/230 (42%), Positives = 154/230 (66%), Gaps = 2/230 (0%) Query: 12 LSNLNAGIAFAAGVASFISPCCLPLYPSYLSYITGLSVQELKAGSTTRKARFRTISHTLA 71 ++++N +AF AG SFISPCCLPLYP++LSYITG+SV ELK + + R ++ HTL Sbjct: 1 MADVNLFLAFGAGFLSFISPCCLPLYPAFLSYITGISVSELKTENALMQRR--SLLHTLF 58 Query: 72 FILGLSAVFYTIGFGAGLFGEVFQEQRDLIRKLSAILVMAMGLFLLGIFQPKFLLRERKL 131 F+LG S +F +IGFG L G+ F E +D IR++ A+L++ GL ++GI+ P FL+++R+ Sbjct: 59 FLLGFSLIFISIGFGTSLIGKWFSEYQDFIRQIGALLIIIFGLVIVGIWNPAFLMKDRRF 118 Query: 132 NLKWKPAGYLGSFILGIGFSAGWSPCIGPILTPIIALSASDQGAWFTLITAYCIGFALPF 191 + + +P+GY+GS I+G+ F+AGW+PC GPIL +IAL+A++ + + AY +GFA+PF Sbjct: 119 SFQERPSGYIGSIIIGMAFAAGWTPCTGPILVSVIALAATNPSSGMLYMLAYSLGFAVPF 178 Query: 192 IVLAFFLGGARRILKYSNLLMKVXXXXXXXXXXXXXTDQMFRITIWLQGI 241 +L+FF+G + I ++S +MK+ D M +I + I Sbjct: 179 FILSFFIGKLQWIRRHSEKMMKIGGYVMIAMGVVLFFDWMTKIITYTTSI 228 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,322,570,760 Number of extensions: 51195561 Number of successful extensions: 178670 Number of sequences better than 1.0e-05: 981 Number of HSP's gapped: 177261 Number of HSP's successfully gapped: 987 Length of query: 248 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 116 Effective length of database: 1,817,122,223 Effective search space: 210786177868 Effective search space used: 210786177868 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)