BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0055.p (267 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK17.1 B3KK17_9BACI ABC-3 protein 313 1e-83 B1DFK2.1 B1DFK2_9BACL ABC-3 protein 277 6e-73 A6TMG4.1 A6TMG4_ALKMQ ABC-3 protein 182 2e-44 A4J7V0.1 A4J7V0_DESRM ABC-3 protein 180 1e-43 A8MIN8.1 A8MIN8_ALKOO ABC-3 protein 179 3e-43 >B3KK17.1 B3KK17_9BACI ABC-3 protein Length = 270 Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 171/243 (70%), Positives = 188/243 (77%) Query: 1 LEILFSDFFQRALAGGLMIGITAPLIGVFLVLRRLSMIGDTLAHVTIAGVALGFLTGFYP 60 L+IL SDFFQRAL GG++IGITAPLIG+FLVLRRLSMIGDTL+HVTIAGVALGFL YP Sbjct: 4 LDILLSDFFQRALIGGVLIGITAPLIGIFLVLRRLSMIGDTLSHVTIAGVALGFLIEVYP 63 Query: 61 LGAGLIFAVVASFAIEKLRKAYKSYAELSIAIIMSGGVALASLFFTLGKGYNADVMSYLF 120 L AGL+FAV+ASFAIEKLRKAYKSYAELSIAIIMSGGVALASLFFTLG GYN DVMSYLF Sbjct: 64 LAAGLVFAVLASFAIEKLRKAYKSYAELSIAIIMSGGVALASLFFTLGMGYNTDVMSYLF 123 Query: 121 GSIYTLDNTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAASVSGLPVKLLNMLITVLT 180 GSIYTLD+TD DAASVSGLPVK +NM+ITVLT Sbjct: 124 GSIYTLDSTDIYMVGGVTVVVIAVVVMFFKEFFLLSFEEDAASVSGLPVKWMNMIITVLT 183 Query: 181 ALVISTAIKIVGSLLVSALLTIPVAISLLLSRSFKSSVMLSXXXXXXXXXXXXXXXXXWN 240 ALV+STAIKIVG+LLVSALLTIPVAISLLL+RSF+SS++LS +N Sbjct: 184 ALVVSTAIKIVGALLVSALLTIPVAISLLLARSFRSSIVLSVIISEIAVIGGLMLAGVFN 243 Query: 241 LAP 243 LAP Sbjct: 244 LAP 246 >B1DFK2.1 B1DFK2_9BACL ABC-3 protein Length = 269 Score = 277 bits (709), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 145/243 (59%), Positives = 176/243 (72%) Query: 1 LEILFSDFFQRALAGGLMIGITAPLIGVFLVLRRLSMIGDTLAHVTIAGVALGFLTGFYP 60 +EIL S+FFQRAL GG++IGITAPL+G+FLVLRRLSMIGDTL+HV+IAGVALGFL G YP Sbjct: 1 MEILASEFFQRALIGGVLIGITAPLMGIFLVLRRLSMIGDTLSHVSIAGVALGFLIGVYP 60 Query: 61 LGAGLIFAVVASFAIEKLRKAYKSYAELSIAIIMSGGVALASLFFTLGKGYNADVMSYLF 120 + GL+FA++ASF IEKLRK YK+YAELSIAIIMSGGVALAS+ FT+G+G+N +V YLF Sbjct: 61 VAVGLVFAIIASFFIEKLRKTYKTYAELSIAIIMSGGVALASILFTMGRGFNINVNGYLF 120 Query: 121 GSIYTLDNTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAASVSGLPVKLLNMLITVLT 180 GSI+TLDN D DAA+VSGLPV+ N++I+VLT Sbjct: 121 GSIFTLDNVDLITIAVVTVVVLVAIRTQLKELFLLTFDEDAAAVSGLPVRFYNVMISVLT 180 Query: 181 ALVISTAIKIVGSLLVSALLTIPVAISLLLSRSFKSSVMLSXXXXXXXXXXXXXXXXXWN 240 ALVIS +IKIVG+LLVSALLTIP A SL+++RSF+ SV+ WN Sbjct: 181 ALVISASIKIVGALLVSALLTIPAACSLIIARSFRQSVITVVVIGELAVVAGLMLAGVWN 240 Query: 241 LAP 243 LAP Sbjct: 241 LAP 243 >A6TMG4.1 A6TMG4_ALKMQ ABC-3 protein Length = 276 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 101/216 (46%), Positives = 139/216 (64%), Gaps = 1/216 (0%) Query: 2 EILFSDFFQRALAGGLMIGITAPLIGVFLVLRRLSMIGDTLAHVTIAGVALGFLTGFYPL 61 EIL F QRA G+MI + P IG+FLVLRRLSMIGDTL+HV +AGVA G L G YP+ Sbjct: 3 EILTYGFMQRAFMAGIMIAVICPAIGIFLVLRRLSMIGDTLSHVALAGVAGGMLWGIYPI 62 Query: 62 GAGLIFAVVASFAIEKLRKAYKSYAELSIAIIMSGGVALASLFFTLGKGYNADVMSYLFG 121 + L F+V+A+ AIE+LRK Y YAELSIAII+S G+ LA++ ++G NA + SYLFG Sbjct: 63 YSALGFSVLAALAIERLRKEYAQYAELSIAIILSAGIGLATILISMGNA-NAAIFSYLFG 121 Query: 122 SIYTLDNTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAASVSGLPVKLLNMLITVLTA 181 SI + + D +AA ++G+PVK +N+ T+L A Sbjct: 122 SIALVSSQDIMTVMGLGVFILLSVLVFYRGLFYIAFDEEAAKLAGVPVKFINLYFTILIA 181 Query: 182 LVISTAIKIVGSLLVSALLTIPVAISLLLSRSFKSS 217 + I+ +++IVG LLVS+++ IPVA SL L++SFK + Sbjct: 182 MTIAISMRIVGILLVSSMMIIPVATSLQLAKSFKGA 217 >A4J7V0.1 A4J7V0_DESRM ABC-3 protein Length = 276 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/243 (39%), Positives = 145/243 (59%) Query: 1 LEILFSDFFQRALAGGLMIGITAPLIGVFLVLRRLSMIGDTLAHVTIAGVALGFLTGFYP 60 +EI +F QRAL G ++G+ P +G+F+ +RR+SMI D LAHV ++GVA G +TG +P Sbjct: 1 MEIFQYEFMQRALIAGFLVGLICPAVGLFITVRRMSMISDALAHVCLSGVAAGIITGIHP 60 Query: 61 LGAGLIFAVVASFAIEKLRKAYKSYAELSIAIIMSGGVALASLFFTLGKGYNADVMSYLF 120 + + +FA IE+LRKAY +Y+E+SIAII+S GVAL ++ LGKGY+A+ +SYLF Sbjct: 61 VLSASLFAAGGGLLIERLRKAYHTYSEISIAIILSAGVALGAILLDLGKGYSANFISYLF 120 Query: 121 GSIYTLDNTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAASVSGLPVKLLNMLITVLT 180 GSI + D D A VSG+PV +++ T++T Sbjct: 121 GSIVAISTDDLKIISLMGFSILLLIHLLNKEMFAISFDEDHARVSGIPVDAISICFTIIT 180 Query: 181 ALVISTAIKIVGSLLVSALLTIPVAISLLLSRSFKSSVMLSXXXXXXXXXXXXXXXXXWN 240 AL I+ +I++VG LLVS+L+ +PVA S+ L+ SF+S+++L+ N Sbjct: 181 ALTIAMSIRVVGILLVSSLMVLPVATSMRLASSFRSAMLLAILFAESAILVGLFASFYIN 240 Query: 241 LAP 243 LAP Sbjct: 241 LAP 243 >A8MIN8.1 A8MIN8_ALKOO ABC-3 protein Length = 270 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 99/217 (45%), Positives = 138/217 (63%), Gaps = 1/217 (0%) Query: 1 LEILFSDFFQRALAGGLMIGITAPLIGVFLVLRRLSMIGDTLAHVTIAGVALGFLTGFYP 60 LEIL F QRA G+M+ + P IGVFLVLRR+SMIGDTL+HV +AGVA G L G YP Sbjct: 2 LEILSYGFMQRAFLAGIMVAMICPAIGVFLVLRRMSMIGDTLSHVALAGVAGGILAGVYP 61 Query: 61 LGAGLIFAVVASFAIEKLRKAYKSYAELSIAIIMSGGVALASLFFTLGKGYNADVMSYLF 120 + L F+V+ + A+EKLRK Y+ YAE+SI+I++S G+ LA++F +LG NA + SYLF Sbjct: 62 IYGALGFSVLGALAMEKLRKEYEQYAEISISIMLSVGIGLATIFISLGNS-NAAIFSYLF 120 Query: 121 GSIYTLDNTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAASVSGLPVKLLNMLITVLT 180 GSI + D +AA ++G+PVK N+ T+L Sbjct: 121 GSIGLTSDQDITVILILGIIIIFSIVFFYKALFYMAFDEEAAKLAGVPVKFTNLYFTILV 180 Query: 181 ALVISTAIKIVGSLLVSALLTIPVAISLLLSRSFKSS 217 A+ I+ +++IVG LL+S+L+ IPVA SL +S+SFK + Sbjct: 181 AMTIAISMRIVGVLLISSLMVIPVATSLQVSKSFKET 217 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 986,001,869 Number of extensions: 34039756 Number of successful extensions: 178508 Number of sequences better than 1.0e-05: 1973 Number of HSP's gapped: 176452 Number of HSP's successfully gapped: 1973 Length of query: 267 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 134 Effective length of database: 1,807,701,208 Effective search space: 242231961872 Effective search space used: 242231961872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)