BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0053.p (326 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK15.1 B3KK15_9BACI Periplasmic solute binding protein 387 e-106 B1DFK4.1 B1DFK4_9BACL Periplasmic solute binding protein 342 3e-92 A8RNG1.1 A8RNG1_9CLOT Putative uncharacterized protein 241 1e-61 C1SC42.1 C1SC42_9ACTN ABC-type metal ion transport system, perip... 224 6e-57 A3DCV4.1 A3DCV4_CLOTH Periplasmic solute binding protein 221 7e-56 >B3KK15.1 B3KK15_9BACI Periplasmic solute binding protein Length = 363 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 197/326 (60%), Positives = 228/326 (69%), Gaps = 32/326 (9%) Query: 33 IVEGKINVITTFYPIYEFASEIGGEDIHAINLLPVGVEPHDWTPRSQDIINTSKAQLFLY 92 IVEGK+NVITTFYPIYEF EIGG++++ +NLLP GVEPHDWTPRSQDI+NTSKAQLFLY Sbjct: 38 IVEGKVNVITTFYPIYEFTKEIGGDEVNVVNLLPTGVEPHDWTPRSQDIVNTSKAQLFLY 97 Query: 93 NGAGLEGWVPNFLKSLDADSEAKAVEVSKGVDYI--------------MTXXXXXXXXXX 138 NGAGLEGW P FLK LD D++ K V VS+G+ I Sbjct: 98 NGAGLEGWAPGFLKGLDKDTQVKPVIVSQGIQLIDAVGDDGHGHGEAAHEEEHDHSHEEG 157 Query: 139 XXXXXXXXXXXTDTLH-------------TDPH-----TWVSPRSALIMAENIKESLQSV 180 T+ H TD H TWVSP+SAL+MAENIK SL V Sbjct: 158 AEAHDHSHEEGTEEDHAGHDHEEEAAETNTDTHHTDPHTWVSPKSALVMAENIKNSLVEV 217 Query: 181 DPAHKDGYEERYNKLAERLKALDSKFATELAKLPNHEIVVSHQAFAYLARDYGLTQHAIM 240 DP HKDGYE+RY L E+L LD+ FA+EL+KLP +IVVSHQAF YL RDYGLTQHAIM Sbjct: 218 DPEHKDGYEQRYEALKEKLVKLDNDFASELSKLPKKDIVVSHQAFGYLCRDYGLTQHAIM 277 Query: 241 GLSADAEPRSQDLLKLADLVKKEGIRYIFFEELVSDKLAKTLAAEAGVSTMVLNPVEGLT 300 GLS DAEPR+QD++ L VK++ ++YIFFEELVSDKLAKTLA EAGV T+VLNPVEGLT Sbjct: 278 GLSPDAEPRAQDIVNLTKTVKEKEVKYIFFEELVSDKLAKTLANEAGVETLVLNPVEGLT 337 Query: 301 EAQEKNGDNYFTLMEKNLQNLILALQ 326 + Q +G+NYFTLMEKNLQNL ALQ Sbjct: 338 KEQASSGENYFTLMEKNLQNLTKALQ 363 >B1DFK4.1 B1DFK4_9BACL Periplasmic solute binding protein Length = 315 Score = 342 bits (877), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 167/304 (54%), Positives = 215/304 (70%), Gaps = 8/304 (2%) Query: 23 AACGPKSSGSIVEGKINVITTFYPIYEFASEIGGEDIHAINLLPVGVEPHDWTPRSQDII 82 +ACG S ++VEGK NV+T+FYP+Y ASEIGG++++ +NL+P GVEPHDWTP+SQD+ Sbjct: 19 SACGANSDKTLVEGKTNVVTSFYPLYYLASEIGGDNVNVVNLIPAGVEPHDWTPKSQDLT 78 Query: 83 NTSKAQLFLYNGAGLEGWVPNFLKSLDADSEAKAVEVSKGVDYIMTXXXXXXXXXXXXXX 142 SKAQLFLYNGAGLEGW +FLK L +S E+SKG+ I Sbjct: 79 IASKAQLFLYNGAGLEGWTDDFLKGLPKNSGLITAEMSKGIALI--------HGNPEEEE 130 Query: 143 XXXXXXXTDTLHTDPHTWVSPRSALIMAENIKESLQSVDPAHKDGYEERYNKLAERLKAL 202 L DPHTWVSP+SA++MA N+K+SL DP+ K+ +E Y+ L +L+AL Sbjct: 131 DHDHGDHDHDLDVDPHTWVSPKSAMVMAANVKDSLIQADPSQKEAFEANYDALIGKLEAL 190 Query: 203 DSKFATELAKLPNHEIVVSHQAFAYLARDYGLTQHAIMGLSADAEPRSQDLLKLADLVKK 262 + +F ++LA P+ IVVSHQAF YLARDYGLTQ AI GLS DAEPR+QDLLK+A VK Sbjct: 191 NEEFESKLAAAPHKSIVVSHQAFGYLARDYGLTQIAITGLSPDAEPRAQDLLKVAKFVKS 250 Query: 263 EGIRYIFFEELVSDKLAKTLAAEAGVSTMVLNPVEGLTEAQEKNGDNYFTLMEKNLQNLI 322 EGI+YI+FEE+VS LAKT+A+E +VLNP+EGLT QEK G++Y +LME+NLQNL+ Sbjct: 251 EGIKYIYFEEMVSPDLAKTIASETHTKLLVLNPIEGLTPKQEKAGEDYLSLMEQNLQNLL 310 Query: 323 LALQ 326 LQ Sbjct: 311 TGLQ 314 >A8RNG1.1 A8RNG1_9CLOT Putative uncharacterized protein Length = 367 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 124/290 (42%), Positives = 169/290 (58%), Gaps = 1/290 (0%) Query: 37 KINVITTFYPIYEFASEIGGEDIHAINLLPVGVEPHDWTPRSQDIINTSKAQLFLYNGAG 96 K+ V+ +FYP+Y+FA +IGG+ N++P G EPHDW P + DI N +A LF+Y+G G Sbjct: 79 KLKVMASFYPMYDFAVKIGGDKAEVTNMVPAGTEPHDWEPAAADIKNLEEAALFVYSGGG 138 Query: 97 LEGWVPNFLKSLDADSEAKAVEVSKGVDYIMTXXXXXXXXXXXXXXXXXXXXXTDTLHTD 156 +E WV + L SL+ + +VE S GV D D Sbjct: 139 MEHWVEDVLASLET-KKLVSVEASAGVTLRSGHIHDEEEHKGAEEHTEEEDHGHDHGQFD 197 Query: 157 PHTWVSPRSALIMAENIKESLQSVDPAHKDGYEERYNKLAERLKALDSKFATELAKLPNH 216 PH W+SP +A ENIK + DP +KD YE+ Y LD ++ L+ LPN Sbjct: 198 PHVWLSPVNAKKEMENIKNAYVKADPENKDYYEKNYQTYTAEFDKLDQEYKDTLSALPNK 257 Query: 217 EIVVSHQAFAYLARDYGLTQHAIMGLSADAEPRSQDLLKLADLVKKEGIRYIFFEELVSD 276 IVVSH+AF YL YGLTQ I GLS D+EP + ++ D VK ++ IFFEELVS Sbjct: 258 SIVVSHEAFGYLCDAYGLTQMGIEGLSPDSEPDPARMAEIIDFVKANHVKVIFFEELVSP 317 Query: 277 KLAKTLAAEAGVSTMVLNPVEGLTEAQEKNGDNYFTLMEKNLQNLILALQ 326 K+A+T+AAE G T VLNP+EGL++ + KNG +YF++ME NL+ L AL+ Sbjct: 318 KVAETIAAETGAQTRVLNPLEGLSDEELKNGADYFSVMEDNLKQLKAALE 367 >C1SC42.1 C1SC42_9ACTN ABC-type metal ion transport system, periplasmic component/surface adhesin Length = 349 Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 120/291 (41%), Positives = 167/291 (57%), Gaps = 3/291 (1%) Query: 37 KINVITTFYPIYEFASEIGGEDIHAINLLPVGVEPHDWTPRSQDIINTSKAQLFLYNGAG 96 K+ V +FYP+Y+FA +IGG+ + L+P G EPHDW P + DI S A + +YNGAG Sbjct: 59 KVQVSASFYPMYDFAQKIGGDRVEVSCLVPAGTEPHDWEPSTTDIAKLSNADVLVYNGAG 118 Query: 97 LEGWVPNFLKSLDADSEAKAVEVSKGVDY--IMTXXXXXXXXXXXXXXXXXXXXXTDTLH 154 +E W+ + L SL + S AVE SKGV + D Sbjct: 119 MEHWIDDTLASLSS-SHLVAVEASKGVTLRELSEEADEHEHAHEEHAEGNHDDHDHDHSG 177 Query: 155 TDPHTWVSPRSALIMAENIKESLQSVDPAHKDGYEERYNKLAERLKALDSKFATELAKLP 214 TDPH W++P++A I NI+++L DP D Y Y+K A LD++F T LA + Sbjct: 178 TDPHVWLNPQNAKIEMGNIRDALIQADPDGADVYRANYDKWAAECDTLDNEFKTGLANVA 237 Query: 215 NHEIVVSHQAFAYLARDYGLTQHAIMGLSADAEPRSQDLLKLADLVKKEGIRYIFFEELV 274 IVVSH+AF YL Y LTQ I G+ AD+EP ++++ ++A+ VK+ ++ IF EELV Sbjct: 238 QRSIVVSHEAFGYLCDAYNLTQMPIEGIEADSEPDAKEMAEIAEFVKEHNVKTIFSEELV 297 Query: 275 SDKLAKTLAAEAGVSTMVLNPVEGLTEAQEKNGDNYFTLMEKNLQNLILAL 325 S K+A+ +A E G T LNPVEGLT+ Q G++YF+ M NL L AL Sbjct: 298 SPKVAQAIAQETGAQTAELNPVEGLTDEQLAAGEDYFSTMRDNLTALKEAL 348 >A3DCV4.1 A3DCV4_CLOTH Periplasmic solute binding protein Length = 318 Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 112/290 (38%), Positives = 171/290 (58%), Gaps = 7/290 (2%) Query: 37 KINVITTFYPIYEFASEIGGEDIHAINLLPVGVEPHDWTPRSQDIINTSKAQLFLYNGAG 96 KINV +FY +Y+FA++IGG+ I+ +N++P G EPH W P +DI+ KA +F+YNGAG Sbjct: 36 KINVYASFYTMYDFANKIGGDRINLVNIMPAGTEPHHWEPSPKDILEIEKADVFIYNGAG 95 Query: 97 LEGWVPNFLKSLDADSEAKAVEVSKGVDYIMTXXXXXXXXXXXXXXXXXXXXXTDTLHTD 156 +E WV L S+ + E VE SK ++ + D L D Sbjct: 96 MEPWVEKVLGSI-TNKELVVVETSKNIELLRGGHYHDEENAEEESDGH------DDLAYD 148 Query: 157 PHTWVSPRSALIMAENIKESLQSVDPAHKDGYEERYNKLAERLKALDSKFATELAKLPNH 216 PH W+SP++A E IK++ DP +K+ YE+ + ++L LD ++ ELAK Sbjct: 149 PHVWLSPKNAKKQMEAIKDAFVKADPENKEYYEKNFEDNVKKLDDLDREYREELAKYTKK 208 Query: 217 EIVVSHQAFAYLARDYGLTQHAIMGLSADAEPRSQDLLKLADLVKKEGIRYIFFEELVSD 276 +IVV HQA+ YL ++YGL Q+AI GL+A++EP + ++ +K+ I+ IF E+L+S Sbjct: 209 DIVVGHQAYGYLCKEYGLRQYAIEGLNAESEPTPARMAEIVKFIKENDIKVIFSEKLLSQ 268 Query: 277 KLAKTLAAEAGVSTMVLNPVEGLTEAQEKNGDNYFTLMEKNLQNLILALQ 326 K+ +AAE GV LNP+ GLT+ + +G YFT+M +NL+ L A + Sbjct: 269 KVPNAIAAETGVRVEFLNPLGGLTQEEIDSGKEYFTVMRENLEALKKAFE 318 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.132 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,630,472,447 Number of extensions: 59470094 Number of successful extensions: 135048 Number of sequences better than 1.0e-05: 1759 Number of HSP's gapped: 133586 Number of HSP's successfully gapped: 2023 Length of query: 326 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 190 Effective length of database: 1,779,438,163 Effective search space: 338093250970 Effective search space used: 338093250970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)