BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0350.0052.p
         (84 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DFK5.1 B1DFK5_9BACL Methionyl-tRNA synthetase                       137   4e-31
B3KK14.1 B3KK14_9BACI Methionyl-tRNA synthetase                       132   7e-30
C0ZHC2.1 C0ZHC2_BREBN Methionyl-tRNA synthetase EC=6.1.1.10           122   1e-26
Q9KGK8.1 SYM_BACHD Methionyl-tRNA synthetase EC=6.1.1.10              114   2e-24
Q2B0D0.1 Q2B0D0_9BACI Methionyl-tRNA synthetase (Methionine--tRN...   114   3e-24

>B1DFK5.1 B1DFK5_9BACL Methionyl-tRNA synthetase
          Length = 663

 Score =  137 bits (344), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 63/70 (90%), Positives = 67/70 (95%)

Query: 15  GYEQRQVVSGIAKFYTPEELVGRKVICIVNLKPVKLRGELSQGMILAASKGDQLTIATVP 74
           GYEQRQVVSGIAKFYTPE++VGRKVIC+ NLKPVKLRGELSQGMILAAS GDQLT+ATVP
Sbjct: 594 GYEQRQVVSGIAKFYTPEQMVGRKVICVTNLKPVKLRGELSQGMILAASHGDQLTLATVP 653

Query: 75  DSMPNGAIVK 84
           D MPNGAIVK
Sbjct: 654 DDMPNGAIVK 663


>B3KK14.1 B3KK14_9BACI Methionyl-tRNA synthetase
          Length = 662

 Score =  132 bits (333), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/70 (88%), Positives = 67/70 (95%)

Query: 15  GYEQRQVVSGIAKFYTPEELVGRKVICIVNLKPVKLRGELSQGMILAASKGDQLTIATVP 74
           G+EQRQVVSGIAKFYTPEELVGRKVIC+ NLKPVKLRGE+SQGMILAAS GDQLT+ATVP
Sbjct: 593 GFEQRQVVSGIAKFYTPEELVGRKVICVTNLKPVKLRGEMSQGMILAASYGDQLTLATVP 652

Query: 75  DSMPNGAIVK 84
           + MPNGAIVK
Sbjct: 653 EGMPNGAIVK 662


>C0ZHC2.1 C0ZHC2_BREBN Methionyl-tRNA synthetase EC=6.1.1.10
          Length = 675

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/70 (81%), Positives = 65/70 (92%)

Query: 15  GYEQRQVVSGIAKFYTPEELVGRKVICIVNLKPVKLRGELSQGMILAASKGDQLTIATVP 74
           GYE+RQVVSGIAK+Y+PE++VG+KVI + NLKPVKLRGELSQGMILAAS GDQLT+ATV 
Sbjct: 606 GYEKRQVVSGIAKYYSPEDMVGKKVILVANLKPVKLRGELSQGMILAASAGDQLTLATVD 665

Query: 75  DSMPNGAIVK 84
            SMPNGAIVK
Sbjct: 666 PSMPNGAIVK 675


>Q9KGK8.1 SYM_BACHD Methionyl-tRNA synthetase EC=6.1.1.10
          Length = 660

 Score =  114 bits (286), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/70 (72%), Positives = 64/70 (91%)

Query: 15  GYEQRQVVSGIAKFYTPEELVGRKVICIVNLKPVKLRGELSQGMILAASKGDQLTIATVP 74
           GYE+RQVVSGIAK+Y+P +L+G+KVIC+ NLKPVKLRGELSQGMILA S+GDQL +ATV 
Sbjct: 591 GYEKRQVVSGIAKYYSPSDLIGKKVICVTNLKPVKLRGELSQGMILAGSEGDQLRLATVD 650

Query: 75  DSMPNGAIVK 84
            ++PNG++VK
Sbjct: 651 GALPNGSLVK 660


>Q2B0D0.1 Q2B0D0_9BACI Methionyl-tRNA synthetase (Methionine--tRNA ligase)
          Length = 653

 Score =  114 bits (285), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/70 (75%), Positives = 62/70 (88%)

Query: 15  GYEQRQVVSGIAKFYTPEELVGRKVICIVNLKPVKLRGELSQGMILAASKGDQLTIATVP 74
           GYE+RQVVSGIAKFY PEELVGRKVIC+ NLKPVKLRGELS+GMILA S+   L++AT+ 
Sbjct: 584 GYEKRQVVSGIAKFYKPEELVGRKVICVTNLKPVKLRGELSEGMILAGSEDGALSLATIA 643

Query: 75  DSMPNGAIVK 84
           +S+PNGA VK
Sbjct: 644 ESLPNGARVK 653


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 384,083,127
Number of extensions: 11030326
Number of successful extensions: 25782
Number of sequences better than 1.0e-05: 778
Number of HSP's gapped: 25671
Number of HSP's successfully gapped: 778
Length of query: 84
Length of database: 3,060,696,203
Length adjustment: 54
Effective length of query: 30
Effective length of database: 2,551,961,393
Effective search space: 76558841790
Effective search space used: 76558841790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)