BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0051.p (595 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK14.1 B3KK14_9BACI Methionyl-tRNA synthetase 843 0.0 Q9KGK8.1 SYM_BACHD Methionyl-tRNA synthetase EC=6.1.1.10 807 0.0 B1DFK5.1 B1DFK5_9BACL Methionyl-tRNA synthetase 804 0.0 A8W207.1 A8W207_9BACI Recombination protein RecR 781 0.0 Q73FH0.1 Q73FH0_BACC1 Methionyl-tRNA synthetase EC=6.1.1.10 781 0.0 >B3KK14.1 B3KK14_9BACI Methionyl-tRNA synthetase Length = 662 Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/535 (76%), Positives = 447/535 (83%), Gaps = 14/535 (2%) Query: 1 MSDKKTFYLTTPIYYPSDKLHIGHAYSTVAGDAMARYKRLRGYEVRYLTGTDEHGQKIEE 60 M+DKKTFY+TTPIYYPSDKLHIGHAY+TVAGDAMARYKRLRGY+VRYLTGTDEHGQKIE Sbjct: 1 MADKKTFYITTPIYYPSDKLHIGHAYTTVAGDAMARYKRLRGYDVRYLTGTDEHGQKIER 60 Query: 61 KAAKAGKTPQAFVDDIVVGIKELWRKLDISNDDFIRTTEERHKQVVADIFDRLLKQGDIY 120 KAA+AGKTPQ FVDDIV GIK+LW+KLDISN+DFIRTTE+RH VV D+F+RLLKQ DIY Sbjct: 61 KAAEAGKTPQQFVDDIVAGIKDLWKKLDISNEDFIRTTEKRHTTVVQDVFERLLKQDDIY 120 Query: 121 KGEYEGWYCISDETFYTETQLVDIERDADGKVIGGKSPDSGHPVQLVKEESYFFRMSKYV 180 KGEYEGWYC E+F+ E QLV+ G PD G PV+LVKEESYFFRMSKYV Sbjct: 121 KGEYEGWYCTPCESFFLERQLVN-----------GNCPDCGRPVELVKEESYFFRMSKYV 169 Query: 181 DRLLAYYEENPEFIQPESRKNEMINNFIKPGLEDLAVSRTMFXXXXXXXXXXXXXXXXWI 240 DRLL YYEENP+FIQP SRKNEMINNFIKPGLEDLAVSRT + WI Sbjct: 170 DRLLQYYEENPDFIQPVSRKNEMINNFIKPGLEDLAVSRTTYEWGVKVKSDPKHVIYVWI 229 Query: 241 DALTNYITALGYGSGDRSLYDKFWPADVHIMSKEIVRFHTIYWPIILMALGEPLPKKVFA 300 DAL NYITALGYG+ D SLYDK+WPADVH+MSKEIVRFHTIYWPIILMAL PLPKKVFA Sbjct: 230 DALLNYITALGYGTEDTSLYDKYWPADVHLMSKEIVRFHTIYWPIILMALDVPLPKKVFA 289 Query: 301 HGWLLMKDGKMSKSKGNVVDPVTLIDRYGLDALXXXRYYLLREVPFGSDGTFTPESFVDR 360 HGWLLMKDGKMSKSKGNVVDPVT+IDRYGLDAL RYYLLREVPFG+DGTFTPESFV+R Sbjct: 290 HGWLLMKDGKMSKSKGNVVDPVTMIDRYGLDAL---RYYLLREVPFGADGTFTPESFVER 346 Query: 361 VNYDLANDLGNLLNRTGAMVEKYFAGVLPAYAGNVTAFDGELEAAAKSTYAKVEEAMEKM 420 VN DLANDLGNLLNRT AMV+KYF G +PA++ VT FD +E AAKS Y KVE AME M Sbjct: 347 VNSDLANDLGNLLNRTVAMVDKYFDGEVPAFSAGVTPFDAAIEEAAKSVYDKVETAMENM 406 Query: 421 EFSVALTAIGAFISRTNKYIDETQPWVLAKDESRNGELASVMRHLVEGLRTASILLQPFL 480 EFSVALTAI F+SR+NKYIDETQPW LAKDES+ ELASVM HLVE LR ASILLQPFL Sbjct: 407 EFSVALTAISQFVSRSNKYIDETQPWTLAKDESKRHELASVMSHLVEALRIASILLQPFL 466 Query: 481 TEAPAKIWQQLGIEPGELTTWDSGKSFGLIPAGTKLAKGDPLFPRLDVAQEVAYI 535 T P K+W+QLG+ GELTTW+SG+ G IPAGTKL KG+P+FPRLD EVAYI Sbjct: 467 TRTPKKMWEQLGLAEGELTTWESGRQLGAIPAGTKLQKGEPIFPRLDAELEVAYI 521 >Q9KGK8.1 SYM_BACHD Methionyl-tRNA synthetase EC=6.1.1.10 Length = 660 Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/533 (73%), Positives = 442/533 (82%), Gaps = 4/533 (0%) Query: 3 DKKTFYLTTPIYYPSDKLHIGHAYSTVAGDAMARYKRLRGYEVRYLTGTDEHGQKIEEKA 62 ++KTFYLTTPIYYPSDKLHIGHAY+TVAGDAMARYKRLRGY V YLTGTDEHGQKIE+KA Sbjct: 4 EQKTFYLTTPIYYPSDKLHIGHAYTTVAGDAMARYKRLRGYNVMYLTGTDEHGQKIEQKA 63 Query: 63 AKAGKTPQAFVDDIVVGIKELWRKLDISNDDFIRTTEERHKQVVADIFDRLLKQGDIYKG 122 G TP+ FVD+IV GI++LW+KLDIS DDFIRTTEERH +VV IF++LL QGDIY G Sbjct: 64 EAKGLTPKQFVDEIVSGIQDLWKKLDISYDDFIRTTEERHIKVVQQIFEQLLDQGDIYLG 123 Query: 123 EYEGWYCISDETFYTETQLVDIERDADGKVIGGKSPDSGHPVQLVKEESYFFRMSKYVDR 182 +YEGWY I DETFYTETQLVD E DADG +IGGKSPDSGHPV+ V+E+SYFFRMSKY DR Sbjct: 124 DYEGWYSIPDETFYTETQLVDKEYDADGNLIGGKSPDSGHPVEKVREQSYFFRMSKYADR 183 Query: 183 LLAYYEENPEFIQPESRKNEMINNFIKPGLEDLAVSRTMFXXXXXXXXXXXXXXXXWIDA 242 LL +YEENP+FIQPESRKNEMINNFIKPGLEDLAVSRT F WIDA Sbjct: 184 LLQFYEENPQFIQPESRKNEMINNFIKPGLEDLAVSRTSFTWGVPVPRDPKHVVYVWIDA 243 Query: 243 LTNYITALGYGSGDRSLYDKFWPADVHIMSKEIVRFHTIYWPIILMALGEPLPKKVFAHG 302 L+NYITALGYGS + Y+ +WPADVH++ KEIVRFHTIYWPI+LMAL PLPKKVF HG Sbjct: 244 LSNYITALGYGSDQQEKYENYWPADVHLVGKEIVRFHTIYWPIMLMALDLPLPKKVFGHG 303 Query: 303 WLLMKDGKMSKSKGNVVDPVTLIDRYGLDALXXXRYYLLREVPFGSDGTFTPESFVDRVN 362 WLLMKDGKMSKSKGNVVDPV LIDRYGLDAL RYYLLREVPFGSDG FTPE+FV+RVN Sbjct: 304 WLLMKDGKMSKSKGNVVDPVPLIDRYGLDAL---RYYLLREVPFGSDGVFTPEAFVERVN 360 Query: 363 YDLANDLGNLLNRTGAMVEKYFAGVLPAYAGNVTAFDGELEAAAKSTYAKVEEAMEKMEF 422 YDLANDLGNLLNRT AM+EKYF G +P+Y + T FD +L ST KVE+AME+MEF Sbjct: 361 YDLANDLGNLLNRTVAMIEKYFDGKIPSYVKDGTPFDADLVELVYSTVKKVEDAMEEMEF 420 Query: 423 SVALTAIGAFISRTNKYIDETQPWVLAKDESRNGELASVMRHLVEGLRTASILLQPFLTE 482 S+ALTAIG ISRTNKYIDETQPWVLAKDES+ +L + M HL E +R S+LLQPF+T+ Sbjct: 421 SIALTAIGQLISRTNKYIDETQPWVLAKDESKREQLGAAMYHLAESIRYVSVLLQPFMTK 480 Query: 483 APAKIWQQLGIEPGELTTWDSGKSFGLIPAGTKLAKGDPLFPRLDVAQEVAYI 535 AP KIW+QLGI+ LTTW+S ++FG IP T + KG PLFPRLDV +EVA+I Sbjct: 481 APQKIWEQLGID-SSLTTWESLETFGQIPGNTNVQKGQPLFPRLDVEEEVAHI 532 >B1DFK5.1 B1DFK5_9BACL Methionyl-tRNA synthetase Length = 663 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/535 (73%), Positives = 437/535 (81%), Gaps = 15/535 (2%) Query: 2 SDKKTFYLTTPIYYPSDKLHIGHAYSTVAGDAMARYKRLRGYEVRYLTGTDEHGQKIEEK 61 +DKKTFY+TTPIYYPSDKLHIGHAY+TVAGDAMARYKRLRGY+V YLTGTDEHGQKIE Sbjct: 3 NDKKTFYITTPIYYPSDKLHIGHAYTTVAGDAMARYKRLRGYDVWYLTGTDEHGQKIERN 62 Query: 62 AAKAGKTPQAFVDDIVVGIKELWRKLDISNDDFIRTTEERHKQVVADIFDRLLKQGDIYK 121 A K+PQ FVDDIVVGIKELW KL+ISNDDFIRTTE RHK+ V IF +LLKQ DIYK Sbjct: 63 AKDKNKSPQQFVDDIVVGIKELWSKLEISNDDFIRTTEPRHKEAVEKIFAQLLKQDDIYK 122 Query: 122 GEYEGWYCISDETFYTETQLVDIERDADGKVIGGKSPDSGHPVQLVKEESYFFRMSKYVD 181 GEYEGWYC E+F+ E QLV+ G PD G PV+LVKEESYFFRMSKY D Sbjct: 123 GEYEGWYCTPCESFFLERQLVN-----------GNCPDCGRPVELVKEESYFFRMSKYAD 171 Query: 182 RLLAYYEENPEFIQPESRKNEMINNFIKPGLEDLAVSRTMFXXXXXXXXXXXXXXXXWID 241 RLL +YEENP+FIQPESRKNEMINNFIKPGLEDLAVSRT F WID Sbjct: 172 RLLKHYEENPDFIQPESRKNEMINNFIKPGLEDLAVSRTTFDWGIKVPGDPKHVIYVWID 231 Query: 242 ALTNYITALGYG-SGDRSLYDKFWPADVHIMSKEIVRFHTIYWPIILMALGEPLPKKVFA 300 AL+NYITALGYG G LYD+FWPADVH++ KEIVRFHTIYWPI+LMALG PLPKKVFA Sbjct: 232 ALSNYITALGYGKEGSSDLYDRFWPADVHLVGKEIVRFHTIYWPIMLMALGLPLPKKVFA 291 Query: 301 HGWLLMKDGKMSKSKGNVVDPVTLIDRYGLDALXXXRYYLLREVPFGSDGTFTPESFVDR 360 HGWLLMKDGKMSKSKGNVVDPVTLIDRYGLDA+ RYYLLREVPFGSDGTFTPE+FVDR Sbjct: 292 HGWLLMKDGKMSKSKGNVVDPVTLIDRYGLDAV---RYYLLREVPFGSDGTFTPENFVDR 348 Query: 361 VNYDLANDLGNLLNRTGAMVEKYFAGVLPAYAGNVTAFDGELEAAAKSTYAKVEEAMEKM 420 +N+DLANDLGNLLNRT AM++KYF G +PAY GNVTAFD L+ A T +VE +ME M Sbjct: 349 INFDLANDLGNLLNRTVAMIDKYFDGEIPAYGGNVTAFDESLQVLAVETVRQVESSMETM 408 Query: 421 EFSVALTAIGAFISRTNKYIDETQPWVLAKDESRNGELASVMRHLVEGLRTASILLQPFL 480 EFSVAL+AI F+SRTNKYIDET PW LAKDE++ GELASVM HL E LR SILLQP+L Sbjct: 409 EFSVALSAIWQFVSRTNKYIDETSPWALAKDEAKKGELASVMYHLAESLRIISILLQPYL 468 Query: 481 TEAPAKIWQQLGIEPGELTTWDSGKSFGLIPAGTKLAKGDPLFPRLDVAQEVAYI 535 T AP ++W+QLG+E GELT W+S K FG +P GT+++KG P+FPRLD A+EVAYI Sbjct: 469 THAPRELWRQLGLEEGELTAWESTKRFGQLPGGTRVSKGAPVFPRLDAAEEVAYI 523 >A8W207.1 A8W207_9BACI Recombination protein RecR Length = 675 Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/535 (71%), Positives = 433/535 (80%), Gaps = 5/535 (0%) Query: 2 SDKKTFYLTTPIYYPSDKLHIGHAYSTVAGDAMARYKRLRGYEVRYLTGTDEHGQKIEEK 61 ++K TFY+TTPIYYPS KLHIGHAY+TVAGDAMARYKRLRG++VRYLTGTDEHGQKIE+K Sbjct: 16 NEKNTFYITTPIYYPSAKLHIGHAYTTVAGDAMARYKRLRGFDVRYLTGTDEHGQKIEQK 75 Query: 62 AAKAGKTPQAFVDDIVVGIKELWRKLDISNDDFIRTTEERHKQVVADIFDRLLKQGDIYK 121 A + GK+PQ FVDDI I+ELW+KLDIS DDFIRTTE+RHKQVV IF+R L+QGDIY Sbjct: 76 AEENGKSPQQFVDDISSDIQELWKKLDISYDDFIRTTEDRHKQVVQHIFERFLEQGDIYL 135 Query: 122 GEYEGWYCISDETFYTETQLVDIERDADGKVIGGKSPDSGHPVQLVKEESYFFRMSKYVD 181 EYEGWY +SDETFYTE QL D E D +G V GGKSPDSGHPV+ V+E+SYFF+MSKY D Sbjct: 136 DEYEGWYSVSDETFYTELQLEDKEYDDNGNVTGGKSPDSGHPVEKVREKSYFFKMSKYAD 195 Query: 182 RLLAYYEENPEFIQPESRKNEMINNFIKPGLEDLAVSRTMFXXXXXXXXXXXXXXXXWID 241 RLLAYYE+NPEFIQPESRKNEMINNFIKPGLEDLAVSRT F WID Sbjct: 196 RLLAYYEDNPEFIQPESRKNEMINNFIKPGLEDLAVSRTSFRWGVPVKSDPEHVVYVWID 255 Query: 242 ALTNYITALGYGSGDRSLYDKFWPADVHIMSKEIVRFHTIYWPIILMALGEPLPKKVFAH 301 AL+NYITALGY + + L+ WPADVH++ KEIVRFHTIYWPI+LMAL PLPKKVF H Sbjct: 256 ALSNYITALGYSTDENGLFQSHWPADVHLVGKEIVRFHTIYWPIMLMALDLPLPKKVFGH 315 Query: 302 GWLLMKDGKMSKSKGNVVDPVTLIDRYGLDALXXXRYYLLREVPFGSDGTFTPESFVDRV 361 GWLLMKDGKMSKSKGNVVDPV LI+RYGLDAL RYYLLREVPFGSDG FTPE FV+RV Sbjct: 316 GWLLMKDGKMSKSKGNVVDPVPLIERYGLDAL---RYYLLREVPFGSDGVFTPEGFVERV 372 Query: 362 NYDLANDLGNLLNRTGAMVEKYFAGVLPAYAGNVTAFDGELEAAAKSTYAKVEEAMEKME 421 NYDLANDLGNLLNR+ AM+ KYF G +PAY + T++D L ++T KVEE+ME M+ Sbjct: 373 NYDLANDLGNLLNRSVAMINKYFDGEVPAYVKDATSYDETLTDLVEATVNKVEESMENMQ 432 Query: 422 FSVALTAIGAFISRTNKYIDETQPWVLAKDESRNGELASVMRHLVEGLRTASILLQPFLT 481 FSVALTAIG ISRTNKYIDETQPW+LAKDE+ +L SV+ HLVE LR SI+LQPF+T Sbjct: 433 FSVALTAIGQLISRTNKYIDETQPWILAKDETAREQLGSVLHHLVESLRQVSIMLQPFMT 492 Query: 482 EAPAKIWQQLGIEPGELTTWDSGKSFGLIPAGTK-LAKGDPLFPRLDVAQEVAYI 535 E P KI +QL I P L WD+ +FG IPAG K +AKG+P+FPRLD +EV I Sbjct: 493 ETPKKIQEQLSI-PDSLMGWDTLVTFGQIPAGKKVVAKGEPIFPRLDTEEEVKAI 546 >Q73FH0.1 Q73FH0_BACC1 Methionyl-tRNA synthetase EC=6.1.1.10 Length = 660 Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/533 (71%), Positives = 433/533 (81%), Gaps = 4/533 (0%) Query: 3 DKKTFYLTTPIYYPSDKLHIGHAYSTVAGDAMARYKRLRGYEVRYLTGTDEHGQKIEEKA 62 + K+FY+TTPIYYPS KLHIGHAY+TVAGDAMARYKR++GY V YLTGTDEHGQKI++KA Sbjct: 4 ENKSFYITTPIYYPSGKLHIGHAYTTVAGDAMARYKRMQGYNVHYLTGTDEHGQKIQKKA 63 Query: 63 AKAGKTPQAFVDDIVVGIKELWRKLDISNDDFIRTTEERHKQVVADIFDRLLKQGDIYKG 122 + TPQA+VD+IV GIKELW K+DIS DDFIRTTE+RHK VV IF +L+ QGDIY Sbjct: 64 EELNVTPQAYVDNIVAGIKELWEKMDISYDDFIRTTEDRHKDVVEKIFKQLVDQGDIYLD 123 Query: 123 EYEGWYCISDETFYTETQLVDIERDADGKVIGGKSPDSGHPVQLVKEESYFFRMSKYVDR 182 EYEGWY + DETFYTE QLVD + D KV+GGKSPDSGH V+LV+EESYFFRM KYVDR Sbjct: 124 EYEGWYSVQDETFYTEHQLVDPIMEGD-KVVGGKSPDSGHDVELVREESYFFRMGKYVDR 182 Query: 183 LLAYYEENPEFIQPESRKNEMINNFIKPGLEDLAVSRTMFXXXXXXXXXXXXXXXXWIDA 242 LL +YEENP FIQPESRKNEMINNFIKPGLEDLAVSRT F W+DA Sbjct: 183 LLKFYEENPHFIQPESRKNEMINNFIKPGLEDLAVSRTSFDWGVRVPGNPKHVIYVWVDA 242 Query: 243 LTNYITALGYGSGDRSLYDKFWPADVHIMSKEIVRFHTIYWPIILMALGEPLPKKVFAHG 302 L+NYITALGYG+ + +Y KFWPADVH++ KEIVRFHTIYWPIILMAL PLPKKVFAHG Sbjct: 243 LSNYITALGYGTENEEMYKKFWPADVHLVGKEIVRFHTIYWPIILMALDLPLPKKVFAHG 302 Query: 303 WLLMKDGKMSKSKGNVVDPVTLIDRYGLDALXXXRYYLLREVPFGSDGTFTPESFVDRVN 362 W+LMKDGKMSKSKGNVVDPVTLIDRYGLDAL RYYLLREVPFGSDG FTPE FV+R+N Sbjct: 303 WILMKDGKMSKSKGNVVDPVTLIDRYGLDAL---RYYLLREVPFGSDGVFTPEGFVERIN 359 Query: 363 YDLANDLGNLLNRTGAMVEKYFAGVLPAYAGNVTAFDGELEAAAKSTYAKVEEAMEKMEF 422 +DLANDLGNLLNRT AM++KYF G +PA+ NVT FDG L A+ T KVEEAME MEF Sbjct: 360 FDLANDLGNLLNRTVAMIDKYFNGEIPAFKANVTEFDGTLVTFAQDTLKKVEEAMENMEF 419 Query: 423 SVALTAIGAFISRTNKYIDETQPWVLAKDESRNGELASVMRHLVEGLRTASILLQPFLTE 482 SVAL++I ISRTNKYIDETQPWVLAKDE+ +LASVM HL E LR I+L PFLT Sbjct: 420 SVALSSIWQLISRTNKYIDETQPWVLAKDENDREKLASVMAHLAEVLRQTGIMLMPFLTV 479 Query: 483 APAKIWQQLGIEPGELTTWDSGKSFGLIPAGTKLAKGDPLFPRLDVAQEVAYI 535 AP+K++ QLG+ T+W+S + G IPAGTK+ KG+P+FPRL++ EVAYI Sbjct: 480 APSKMFAQLGLTEEAHTSWESLSTIGCIPAGTKVEKGNPIFPRLEMEVEVAYI 532 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,387,956,722 Number of extensions: 139594747 Number of successful extensions: 358850 Number of sequences better than 1.0e-05: 4203 Number of HSP's gapped: 349419 Number of HSP's successfully gapped: 4918 Length of query: 595 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 453 Effective length of database: 1,722,912,073 Effective search space: 780479169069 Effective search space used: 780479169069 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)