BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0049.p (158 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK12.1 B3KK12_9BACI Ferric-uptake regulator 240 2e-62 B1DFK6.1 B1DFK6_9BACL Putative uncharacterized protein 209 6e-53 Q65HA6.1 Q65HA6_BACLD Zur 123 7e-27 C0ZHG7.1 C0ZHG7_BREBN Zinc-specific metalloregulatory protein 122 1e-26 P54479.2 ZUR_BACSU Zinc-specific metallo-regulatory protein 121 3e-26 >B3KK12.1 B3KK12_9BACI Ferric-uptake regulator Length = 156 Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 112/150 (74%), Positives = 134/150 (89%), Gaps = 1/150 (0%) Query: 6 MLSTDQILEAMSGQGLRITDQRKTLAKLFGENTGYLSAKDVYEHMGRKYSGLSFDTVYRN 65 ML+T+QI++AMS GLRITDQRKTLAKLFGE+ GYL+AKDVYE+MGRKYSGLSFDTVYRN Sbjct: 1 MLTTEQIIDAMSEHGLRITDQRKTLAKLFGEHPGYLTAKDVYEYMGRKYSGLSFDTVYRN 60 Query: 66 LRVMEELGVLEQVVFEDGVKFKGSCNQDHHHHHMICLQCMKTYPIHFCPMNLTDTPDQFR 125 LRV+ ELGVLEQVVFE+GVKF+G C+++HHHHHMICLQC KTYPI FCPM LTD PD F+ Sbjct: 61 LRVLYELGVLEQVVFEEGVKFRGRCSEEHHHHHMICLQCQKTYPITFCPMQLTDAPDDFQ 120 Query: 126 VVKHKFEVFGYCKEC-EQHREEETAMAAHG 154 VV+HKFEVFGYC++C + + ++ET+ A G Sbjct: 121 VVQHKFEVFGYCRDCGKDNNDKETSQAGGG 150 >B1DFK6.1 B1DFK6_9BACL Putative uncharacterized protein Length = 237 Score = 209 bits (532), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 100/151 (66%), Positives = 116/151 (76%), Gaps = 1/151 (0%) Query: 6 MLSTDQILEAMSGQGLRITDQRKTLAKLFGENTGYLSAKDVYEHMGRKYSGLSFDTVYRN 65 M + D+I++ M+GQGLRITDQRK+LAKLF E GYL+ K+VYE+MG+ YSGLSFDTVYRN Sbjct: 1 MHTIDEIIQRMTGQGLRITDQRKSLAKLFAETPGYLAPKEVYEYMGKSYSGLSFDTVYRN 60 Query: 66 LRVMEELGVLEQVVFEDGVKFKGSCNQDHHHHHMICLQCMKTYPIHFCPMNLTDTPDQFR 125 LRVMEELGV+EQV+FEDGVKFK C ++ HHHHMICLQC TYPI FCPM T PD FR Sbjct: 61 LRVMEELGVIEQVIFEDGVKFKLHCRENDHHHHMICLQCGHTYPITFCPMEQTVVPDDFR 120 Query: 126 VVKHKFEVFGYCKECEQHRE-EETAMAAHGR 155 VVKHKFEVFG + R + AH R Sbjct: 121 VVKHKFEVFGLLQRLHSRRVGSRGKLMAHSR 151 >Q65HA6.1 Q65HA6_BACLD Zur Length = 143 Score = 123 bits (308), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 1/141 (0%) Query: 7 LSTDQILEAMSGQGLRITDQRKTLAKLFGENTGYLSAKDVYEHMGRKYSGLSFDTVYRNL 66 ++ + L+ + +G + T +R+ + +LF ++ YL+AK+V + Y GLSFDT+YRNL Sbjct: 1 MNVQEALDLLKEKGYKYTSKREDMLQLFSDSDKYLTAKNVLSALNDDYPGLSFDTIYRNL 60 Query: 67 RVMEELGVLEQVVFEDGVKFKGSCNQDHHHHHMICLQCMKTYPIHFCPM-NLTDTPDQFR 125 + EELG+LE F+ C+ HHHHH IC+ C KT I CPM LTD D ++ Sbjct: 61 SLFEELGILETTELSGEKLFRFKCSSAHHHHHFICMVCGKTKEIELCPMEKLTDDLDGYQ 120 Query: 126 VVKHKFEVFGYCKECEQHREE 146 + HKFE++G C CE+ E Sbjct: 121 ISGHKFEIYGTCPRCEEESTE 141 >C0ZHG7.1 C0ZHG7_BREBN Zinc-specific metalloregulatory protein Length = 141 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 57/139 (41%), Positives = 88/139 (63%), Gaps = 2/139 (1%) Query: 7 LSTDQILEAMSGQGLRITDQRKTLAKLFGENTGYLSAKDVYEHMGRKYSGLSFDTVYRNL 66 + ++ L+ + G + T +R+ + ++ YLSAKD+ E + +Y LSFDTVYRN+ Sbjct: 1 MKVEEALQILKEHGFKYTGKREEMIRICATEKRYLSAKDIMERIKEQYPTLSFDTVYRNI 60 Query: 67 RVMEELGVLEQVVFEDGVKFKGSCNQD-HHHHHMICLQCMKTYPIHFCPMN-LTDTPDQF 124 ELG+LE+ + +F+ +C+ D HHHHH+IC +C KT + CPMN ++ P++F Sbjct: 61 STFVELGILEETELDGEGRFRLACSTDGHHHHHVICTECGKTSSLPGCPMNIISAVPEEF 120 Query: 125 RVVKHKFEVFGYCKECEQH 143 +V HKFEV+G CKEC H Sbjct: 121 QVTGHKFEVYGTCKECVTH 139 >P54479.2 ZUR_BACSU Zinc-specific metallo-regulatory protein Length = 145 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 58/144 (40%), Positives = 85/144 (59%), Gaps = 1/144 (0%) Query: 7 LSTDQILEAMSGQGLRITDQRKTLAKLFGENTGYLSAKDVYEHMGRKYSGLSFDTVYRNL 66 ++ + L + G + T++R+ + +LF ++ YL+AK+V + Y GLSFDT+YRNL Sbjct: 1 MNVQEALNLLKENGYKYTNKREDMLQLFADSDRYLTAKNVLSALNDDYPGLSFDTIYRNL 60 Query: 67 RVMEELGVLEQVVFEDGVKFKGSCNQDHHHHHMICLQCMKTYPIHFCPMN-LTDTPDQFR 125 + EELG+LE F+ C+ HHHHH ICL C KT I CPM+ L D D ++ Sbjct: 61 SLYEELGILETTELSGEKLFRFKCSFTHHHHHFICLACGKTKEIESCPMDKLCDDLDGYQ 120 Query: 126 VVKHKFEVFGYCKECEQHREEETA 149 V HKFE++G C +C +E T Sbjct: 121 VSGHKFEIYGTCPDCTAENQENTT 144 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 927,047,564 Number of extensions: 36022263 Number of successful extensions: 98132 Number of sequences better than 1.0e-05: 1502 Number of HSP's gapped: 96846 Number of HSP's successfully gapped: 1502 Length of query: 158 Length of database: 3,060,696,203 Length adjustment: 119 Effective length of query: 39 Effective length of database: 1,939,595,418 Effective search space: 75644221302 Effective search space used: 75644221302 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 125 (52.8 bits)