BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0047.p (483 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DIP0.1 B1DIP0_9BACL Sugar transporter EC=1.3.1.74 621 e-176 C1YYJ8.1 C1YYJ8_PEDHE MFS transporter, sugar porter family 475 e-132 A7Z8Y7.1 A7Z8Y7_BACA2 AraE 398 e-109 Q03FB1.1 Q03FB1_PEDPA D-xylose proton-symporter 377 e-102 C1PT15.1 C1PT15_ALIAC MFS transporter, sugar porter family 375 e-102 >B1DIP0.1 B1DIP0_9BACL Sugar transporter EC=1.3.1.74 Length = 457 Score = 621 bits (1601), Expect = e-176, Method: Compositional matrix adjust. Identities = 306/461 (66%), Positives = 371/461 (80%), Gaps = 6/461 (1%) Query: 16 ISQTKALKNEKPNMLFVTLVSIVAALGGILFGFDIAVVSGAVGLLQQHFALSEFQVGWAV 75 +S A N K +M FVTLVS++AALGG+LFGFD AVVSGA+G +Q F L+E +VGWAV Sbjct: 1 MSSLTANANGK-SMKFVTLVSMIAALGGLLFGFDTAVVSGAIGFMQDRFDLNEVEVGWAV 59 Query: 76 SSLIVGSVTGAALSGYMSERFGRKKVLLAAAILFIVGSVGSALQDTFTGYIIARMXXXXX 135 SSLI+G + GA SG +S+RFGRKKVL+AAA LFI+GS+GSA+ DTF+ YI+ARM Sbjct: 60 SSLIIGCIVGAGFSGVLSDRFGRKKVLIAAAALFIIGSIGSAIPDTFSMYIVARMIGGLG 119 Query: 136 XXXTSTICPVYNAEIAPAKYRGRLVALNQLAIVSGIFLVYFLNLWIVGMGDEAWDASTAW 195 TST+CP+YNAEIAPAKYRGRLVALNQ A V+GIFLVYF+N I G GD+AWD + AW Sbjct: 120 IGITSTLCPLYNAEIAPAKYRGRLVALNQFATVTGIFLVYFVNSGIAGYGDDAWDIANAW 179 Query: 196 RWMFGVGAVPGLLFMILMLFIPESPRWLIKRNRPYEALPILVKIHGEEAAXXXXKQEVLD 255 RWMFG+G VPG++F +L+ +PESPRWLIK+ R +AL IL++IHGEE A KQEVLD Sbjct: 180 RWMFGIGVVPGVIFFVLLFLVPESPRWLIKQGRSEQALHILLRIHGEEEA----KQEVLD 235 Query: 256 IKESFNNEN-DSFKQLFTPGIRSALFIGVMLAVMQHITGINAILYYAPEIFKGMGLGTDA 314 IK SF E S K++F PGIR AL +GV+LAV+Q +TGINA++YYAPEIFK MG GTD+ Sbjct: 236 IKASFAEEKGSSLKEIFRPGIRLALIVGVVLAVLQQVTGINAVMYYAPEIFKSMGSGTDS 295 Query: 315 SLTQTIWIGLINVLFTIISVWLIDKVGRKALLLTGTSLMTLCLAIIGAAFQMDLTTGPLV 374 SL QTI IGL+N LFTI+++WLIDKVGRK LLL G+S+MT+CLA+IG AF TTG LV Sbjct: 296 SLLQTILIGLVNFLFTILAIWLIDKVGRKVLLLVGSSVMTICLAVIGIAFHTGHTTGSLV 355 Query: 375 LIVILIYVASFAISLGPVVWVMLSEIFPNRIRGKAVAIASMALWAGDYLVSQLFPPLLSS 434 LI ILIYVA+FA+SLGPVVWV+LSEIFPNR+RG+A AIASMALW DY+VSQ FPP+L S Sbjct: 356 LIFILIYVAAFAVSLGPVVWVVLSEIFPNRVRGRATAIASMALWIADYVVSQSFPPMLES 415 Query: 435 AGPANTFWIFGIASLFSLLFIWRAVPETKGRSLEQMEAMWT 475 AGP+ TFWIFG SL + LF R VPETKG+SLE++EA W+ Sbjct: 416 AGPSVTFWIFGAMSLITFLFTMRVVPETKGKSLEEIEASWS 456 >C1YYJ8.1 C1YYJ8_PEDHE MFS transporter, sugar porter family Length = 448 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 228/451 (50%), Positives = 322/451 (71%), Gaps = 4/451 (0%) Query: 29 MLFVTLVSIVAALGGILFGFDIAVVSGAVGLLQQHFALSEFQVGWAVSSLIVGSVTGAAL 88 M +V ++IVAA+GG+LFG+D AVV+GA+G +QQ F LS +GW S +VG +TGA Sbjct: 1 MSYVYKITIVAAVGGLLFGYDTAVVAGAIGFIQQRFDLSPAMMGWIASCALVGCITGAMF 60 Query: 89 SGYMSERFGRKKVLLAAAILFIVGSVGSALQDTFTGYIIARMXXXXXXXXTSTICPVYNA 148 +GY+S+RFGRKK+L+ +AILF V SVG+A+ + +++ R+ S I P+Y Sbjct: 61 AGYLSDRFGRKKILILSAILFAVSSVGTAMPHELSWFVVFRILGGLGIGIASMISPMYIT 120 Query: 149 EIAPAKYRGRLVALNQLAIVSGIFLVYFLNLWIVGMGDEAWDASTAWRWMFGVGAVPGLL 208 E APA RGRLV++NQ IV+GI L+YF+N I G+ DEAW+ T WRWMFG G +P ++ Sbjct: 121 ECAPAAIRGRLVSINQFGIVTGILLIYFVNAGIAGLYDEAWNIHTGWRWMFGSGIIPSVV 180 Query: 209 FMILMLFIPESPRWLIKRNRPYEALPILVKIHGEEAAXXXXKQEVLDIKESFNNENDSFK 268 F IL++F+PESPRWLI+ + EA IL KI+G A K E+ +I+ + + E +F Sbjct: 181 FFILLMFVPESPRWLIQAGKAKEAEEILTKINGAAKA----KTELAEIEAAIHTETGTFA 236 Query: 269 QLFTPGIRSALFIGVMLAVMQHITGINAILYYAPEIFKGMGLGTDASLTQTIWIGLINVL 328 +LF PG+R+AL IG++L+++ +TGINAI+YYAPEIFK G G+ ++L QTI +G++N+L Sbjct: 237 ELFKPGLRTALIIGIILSIVSQVTGINAIMYYAPEIFKSTGDGSGSALLQTILVGVVNLL 296 Query: 329 FTIISVWLIDKVGRKALLLTGTSLMTLCLAIIGAAFQMDLTTGPLVLIVILIYVASFAIS 388 FTI+++ +D+ GRK LL+ G++ M +CLAIIG AF MD G LVL+ IL Y+A FA+S Sbjct: 297 FTIVAIKYVDRAGRKGLLMAGSAGMAICLAIIGMAFHMDAVKGYLVLVAILAYIACFALS 356 Query: 389 LGPVVWVMLSEIFPNRIRGKAVAIASMALWAGDYLVSQLFPPLLSSAGPANTFWIFGIAS 448 LGP+ +V+++EIFPNR+RG+A++I LWA Y VSQ FP LL S G A TFWIF S Sbjct: 357 LGPLTFVVIAEIFPNRVRGRAMSICLFFLWASVYFVSQFFPMLLKSIGSAYTFWIFMGTS 416 Query: 449 LFSLLFIWRAVPETKGRSLEQMEAMWTGKGS 479 + + LF+W+ VPETKG+SLE++E W G+ Sbjct: 417 IVAFLFVWKLVPETKGKSLEEIEKSWHKTGT 447 >A7Z8Y7.1 A7Z8Y7_BACA2 AraE Length = 464 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/445 (44%), Positives = 289/445 (64%), Gaps = 5/445 (1%) Query: 31 FVTLVSIVAALGGILFGFDIAVVSGAVGLLQQHFALSEFQVGWAVSSLIVGSVTGAALSG 90 FV L+S A LGG+L+G+D AV+SGA+G L+ + LS F G +SS+++G V G +SG Sbjct: 22 FVILISCAAGLGGLLYGYDTAVISGAIGFLKDLYRLSPFMEGLVISSIMIGGVFGVGISG 81 Query: 91 YMSERFGRKKVLLAAAILFIVGSVGSALQDTFTGYIIARMXXXXXXXXTSTICPVYNAEI 150 ++S+RFGR+K+L+AAA+LF V +V SAL + + +IAR+ S++ Y E Sbjct: 82 FLSDRFGRRKILMAAALLFAVSAVVSALSQSVSSLVIARVIGGLGIGMGSSLSVTYITEA 141 Query: 151 APAKYRGRLVALNQLAIVSGIFLVYFLNLWIVGMGDEAWDASTAWRWMFGVGAVPGLLFM 210 AP RG L +L QL + GI YF+NL + G W T WRWM G +P ++F Sbjct: 142 APPAIRGSLSSLYQLFTILGISGTYFINLAVQQSGSYEWGVHTGWRWMLAYGMIPSVIFF 201 Query: 211 ILMLFIPESPRWLIKRNRPYEALPILVKIHGEEAAXXXXKQEVLDIKESFNNEN-DSFKQ 269 I++L +PESPRWL K R EAL +L +I+GE+ A K+E+ I+ S E S Q Sbjct: 202 IVLLIVPESPRWLAKAGRRNEALAVLTRINGEQTA----KEEIKQIETSLQLEKMGSLSQ 257 Query: 270 LFTPGIRSALFIGVMLAVMQHITGINAILYYAPEIFKGMGLGTDASLTQTIWIGLINVLF 329 LF PG+R AL IG++LA+ + G+NAI YY PEIFK MG G +A T +G++ V+F Sbjct: 258 LFKPGLRKALVIGILLALFNQVIGMNAITYYGPEIFKMMGFGQNAGFITTCIVGVVEVIF 317 Query: 330 TIISVWLIDKVGRKALLLTGTSLMTLCLAIIGAAFQMDLTTGPLVLIVILIYVASFAISL 389 TII+V L+DKVGRK L+ G++ M L + +IGA+F L +GP ++++IL +VA+F +S+ Sbjct: 318 TIIAVLLVDKVGRKKLMGVGSAFMALFMILIGASFYFQLASGPALVVIILGFVAAFCVSV 377 Query: 390 GPVVWVMLSEIFPNRIRGKAVAIASMALWAGDYLVSQLFPPLLSSAGPANTFWIFGIASL 449 GP+ W+M+SEIFPN +R +A IA++ LW ++ + Q P ++S G A TFWIF + ++ Sbjct: 378 GPITWIMISEIFPNHLRARAAGIATIFLWGANWAIGQFVPMMISGLGLAYTFWIFAVINI 437 Query: 450 FSLLFIWRAVPETKGRSLEQMEAMW 474 LF+ PETK +SLE++E +W Sbjct: 438 LCFLFVVTICPETKNKSLEEIEKLW 462 >Q03FB1.1 Q03FB1_PEDPA D-xylose proton-symporter Length = 460 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/459 (42%), Positives = 291/459 (63%), Gaps = 4/459 (0%) Query: 24 NEKPNMLFVTLVSIVAALGGILFGFDIAVVSGAVGLLQQHFALSEFQVGWAVSSLIVGSV 83 N+K +V L+S AALGG+LFG+D AV+SGAVG LQ F LS QVGW S +++G Sbjct: 4 NKKRISPYVILISCAAALGGLLFGYDTAVISGAVGFLQIKFTLSSAQVGWVTSCILIGCA 63 Query: 84 TGAALSGYMSERFGRKKVLLAAAILFIVGSVGSALQDTFTGYIIARMXXXXXXXXTSTIC 143 G +++G +S+ FGRKK+L +A++F + S+G+A ++ +I RM TS I Sbjct: 64 LGVSIAGILSDLFGRKKILALSAVIFALSSLGAAFAGSYMILVIWRMLAGIGIGLTSLIT 123 Query: 144 PVYNAEIAPAKYRGRLVALNQLAIVSGIFLVYFLNLWIVGMGDEAWDASTAWRWMFGVGA 203 P+Y AE+AP+ RG+LV++NQLAI GIF+VYF+N I + W+ ST WRWM GVG Sbjct: 124 PLYIAEMAPSNVRGKLVSVNQLAITIGIFIVYFVNAAIASNATQLWNVSTGWRWMMGVGV 183 Query: 204 VPGLLFMILMLFIPESPRWLIKRNRPYEALPILVKIHGEEAAXXXXKQEVLDIKESFNNE 263 +P LLF+I ++ ESPRWL + + A +L K+ + A +E+ +E ++ Sbjct: 184 IPSLLFLIALIPAGESPRWLSQHGKSEAAYKVLQKVEISDEAAEKSLEEIQMSEEVVDDT 243 Query: 264 NDSFKQLFTPGIRSALFIGVMLAVMQHITGINAILYYAPEIFKGMGLGTDASLTQTIWIG 323 F+ LF L IGV+LA+ Q +G NAI+YYAPEIFKG G G + T+ IG Sbjct: 244 K--FRDLFNKTWLPVLIIGVLLALFQQFSGSNAIMYYAPEIFKGAGFGQSGAFMATVSIG 301 Query: 324 LINVLFTIISVWLIDKVGRKALLLTGTSLMTLCLAIIGAAFQMDLTTGPLVLIVILIYVA 383 +IN++ TI+++ L+DK+GRK LL G+ M+ CL ++ F + T + L +L+ +A Sbjct: 302 VINMVITIVALGLVDKIGRKKLLGWGSFAMSCCLLVVSICFFVHAAT-SITLTFVLLAIA 360 Query: 384 SFAISLGPVVWVMLSEIFPNRIRGKAVAIASMALWAGDYLVSQLFPPLLSSAGPANTFWI 443 ++A+SL PV W+++SEIFP +IRG+A++I + LW D+ +S FP L + G TF + Sbjct: 361 AYAVSLAPVTWILISEIFPLKIRGRAMSICTAVLWLSDFTLSYTFPILTQNIGEGWTFML 420 Query: 444 FGIASLFSLLFIWRAVPETKGRSLEQMEAMWTGKGSEVH 482 + + + S +F+W+ VPET+G+SLE++E W K S+ H Sbjct: 421 YVVVTALSAIFVWKLVPETRGKSLEEIEVYWHAK-SKTH 458 >C1PT15.1 C1PT15_ALIAC MFS transporter, sugar porter family Length = 466 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/465 (43%), Positives = 295/465 (63%), Gaps = 9/465 (1%) Query: 11 VINKEISQTKALKNEKPNMLFVTLVSIVAALGGILFGFDIAVVSGAVGLLQQHFALSEFQ 70 ++ E++Q + +PN+ +V V ++A+LGG+LFG+D V++GA L+ F +S Sbjct: 1 MMQAEVAQAE----YRPNLGYVVTVVVIASLGGLLFGYDTGVIAGANEFLKSEFHMSAAT 56 Query: 71 VGWAVSSLIVGSVTGAALSGYMSERFGRKKVLLAAAILFIVGSVGSALQDTFTGYIIARM 130 G SS+ +G++ G ++G++ + FGRKK L A I+FI S+ SA + ++ R Sbjct: 57 TGLVSSSIDLGAMLGVLIAGFLGDSFGRKKALSVAGIIFIASSLISAFAPSVGVLVLGRF 116 Query: 131 XXXXXXXXTSTICPVYNAEIAPAKYRGRLVALNQLAIVSGIFLVYFLNLWIVGMGDEAWD 190 S + P+Y AEIAP + RGRLV NQLAIVSGIF+VYF+N IV AW+ Sbjct: 117 IGGVGIGLASLLSPLYIAEIAPPRIRGRLVGSNQLAIVSGIFIVYFVNAAIVSSHTTAWN 176 Query: 191 ASTAWRWMFGVGAVPGLLFMILMLFIPESPRWLIKRNRPYEALPILVKIHGEEAAXXXXK 250 +T WRWMF +G +P ++F L+ +PESPR+L+KR R +A+ IL ++ G E A + Sbjct: 177 QTTGWRWMFAMGVIPAVIFFFLLFLVPESPRYLMKRGREEQAISILERVSGPERA----R 232 Query: 251 QEVLDIKESFNNENDS-FKQLFTPGIRSALFIGVMLAVMQHITGINAILYYAPEIFKGMG 309 +V +I++S DS F++L PGIR AL IGV+LA+ Q TG NA+ YYAP IFK G Sbjct: 233 WDVEEIRKSLEVVPDSLFQELSRPGIRKALGIGVVLAIFQQFTGTNAVGYYAPMIFKAAG 292 Query: 310 LGTDASLTQTIWIGLINVLFTIISVWLIDKVGRKALLLTGTSLMTLCLAIIGAAFQMDLT 369 GT+AS T+WIG I V+F I+ + ++D+VGRK LL+ LM L LAI+G AF + Sbjct: 293 AGTNASFYDTVWIGAIKVIFVIVLMLIVDRVGRKRLLVWNGMLMALFLAILGVAFSLPHM 352 Query: 370 TGPLVLIVILIYVASFAISLGPVVWVMLSEIFPNRIRGKAVAIASMALWAGDYLVSQLFP 429 LVL ++ + ++ +S G VW++LSEI+P IRG+A+AIAS ALW YLV+Q FP Sbjct: 353 ITWLVLALVFAHTIAYELSWGGGVWIVLSEIYPTAIRGRAMAIASFALWFATYLVAQFFP 412 Query: 430 PLLSSAGPANTFWIFGIASLFSLLFIWRAVPETKGRSLEQMEAMW 474 LL + G TFWIF + + +F+ R VPET +++E++++ W Sbjct: 413 ILLQAIGGTWTFWIFALFCIAMAVFMQRVVPETSKKTMEKIQSDW 457 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,683,773,100 Number of extensions: 106987687 Number of successful extensions: 526108 Number of sequences better than 1.0e-05: 8493 Number of HSP's gapped: 501545 Number of HSP's successfully gapped: 8798 Length of query: 483 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 343 Effective length of database: 1,741,754,103 Effective search space: 597421657329 Effective search space used: 597421657329 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)