BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0044.p (332 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DIN7.1 B1DIN7_9BACL Periplasmic binding protein/LacI transcrip... 299 2e-79 B7GJK7.1 B7GJK7_ANOFW ABC-type sugar transport system, periplasm... 250 1e-64 B1D856.1 B1D856_9BACL Periplasmic binding protein/LacI transcrip... 227 1e-57 Q9K692.1 Q9K692_BACHD Sugar ABC transporter (Sugar-binding protein) 213 2e-53 C5D8H8.1 C5D8H8_9BACI Periplasmic binding protein/LacI transcrip... 201 7e-50 >B1DIN7.1 B1DIN7_9BACL Periplasmic binding protein/LacI transcriptional regulator Length = 327 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 157/298 (52%), Positives = 212/298 (71%), Gaps = 6/298 (2%) Query: 30 QIHRLVEPLKXXXXXXXXXXXKVVLISQELDNYFWRSIEQGARKAAASYAMRLDYIGPDR 89 +I LV PL+ ++ LISQELDN FWRS+E+GA KAA Y M L Y+GP R Sbjct: 31 RIRDLVTPLEASDKDHTRR--QIALISQELDNPFWRSVEEGAMKAAGQYRMELQYMGPFR 88 Query: 90 INPAEQIKLLDKTIASKPDAILIQGLNNPDYRRLIDKATGLGIPVITVDTDEPESERVAY 149 IN EQ+KLL+K IASK D I++QG+ + + LI+KA LGIPVITVDTDEP S+R+AY Sbjct: 89 INAEEQMKLLEKAIASKMDGIIMQGIGSERDKALIEKANKLGIPVITVDTDEPGSKRLAY 148 Query: 150 VGTDNERAGRQMGELVVQASGER---GDIGVLISNEQAENQRLRLAGFRSVIGRYPGLQI 206 VGT+N AG++MG L+ + G++ G IGVL+ +++A NQRLRL GF+SVI Y GL I Sbjct: 149 VGTNNSFAGQEMGHLIAE-DGQKEPSGVIGVLVGSKEAANQRLRLEGFQSVINTYKGLSI 207 Query: 207 VEIRSSDISRLQAAQQAQKMLIQSPNIRFMVGFSSMDGLGFLEAKERLGATGLHIFAFDD 266 E+R+S+ISRLQAAQQA++ML + P I +MVGFSS+DG+G EA R+ G+ IFAFDD Sbjct: 208 AEVRASNISRLQAAQQAEQMLKEHPEITYMVGFSSLDGIGMAEAVARVKPGGVTIFAFDD 267 Query: 267 MEETVDAIRQSKIESAVVQQPVEMGEQAIEQLHDYFSGSPPPTLMYTKTYVITKESLN 324 +E+T+ AIR+ +IE+++VQQP +MG +AI L+ Y G + YT VIT + ++ Sbjct: 268 LEDTLAAIRKKQIEASIVQQPTQMGYEAISLLNQYSQGQDVTSKQYTPISVITDKEVS 325 >B7GJK7.1 B7GJK7_ANOFW ABC-type sugar transport system, periplasmic component Length = 332 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 127/273 (46%), Positives = 189/273 (69%), Gaps = 2/273 (0%) Query: 52 VVLISQELDNYFWRSIEQGARKAAASYAMRLDYIGPDRINPAEQIKLLDKTIASKPDAIL 111 V+LISQE DN +WR IEQGA++A +Y + ++YIGP R + EQ+KLL+K IAS+ D I+ Sbjct: 55 VILISQEFDNPYWRKIEQGAKEAGKNYDVNIEYIGPLRTSVDEQVKLLEKAIASRVDGII 114 Query: 112 IQGLNNPDYRRLIDKATGLGIPVITVDTDEPESERVAYVGTDNERAGRQMGELVV-QASG 170 +Q L + + LIDKA IPVIT+D D P+S R+AYVGT+N AG+ +G+ VV + G Sbjct: 115 VQNLKDEAFIPLIDKAISRNIPVITIDADAPKSRRIAYVGTNNFEAGQLLGKAVVSRVEG 174 Query: 171 ERGDIGVLISNEQAENQRLRLAGFRSVIGRYPGLQIVEIRSSDISRLQAAQQAQKMLIQS 230 ER ++GV+I + +ENQRLRL GF SVI +P L++V + SS+ISR+QA+ QA++ML + Sbjct: 175 ER-ELGVMIGTDTSENQRLRLQGFLSVIAEHPRLKVVSVASSNISRIQASIQAEQMLRKH 233 Query: 231 PNIRFMVGFSSMDGLGFLEAKERLGATGLHIFAFDDMEETVDAIRQSKIESAVVQQPVEM 290 P+I MVG S++D +G A + L + IF FDD+EET++AI+Q I + VVQ+P +M Sbjct: 234 PHISVMVGTSALDAIGIRMATKNLHRQDIQIFGFDDVEETIEAIQQGDIVATVVQKPYDM 293 Query: 291 GEQAIEQLHDYFSGSPPPTLMYTKTYVITKESL 323 G A++ + ++ SG +T VI ++++ Sbjct: 294 GYSAVKLMVEHLSGKQIQKEHFTAIEVIDRQNV 326 >B1D856.1 B1D856_9BACL Periplasmic binding protein/LacI transcriptional regulator Length = 330 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 117/277 (42%), Positives = 172/277 (62%), Gaps = 4/277 (1%) Query: 52 VVLISQELDNYFWRSIEQGARKAAASYAMRLDYIGPDRINPAEQIKLLDKTIASKPDAIL 111 +VLISQE DN +WR ++QGAR+AA + L+Y+GP R + E IK+L+ IASK D I+ Sbjct: 50 LVLISQEYDNPYWRLVQQGAREAAQQKGIELEYLGPARADVKEHIKILEMAIASKVDGII 109 Query: 112 IQGLNNPDYRRLIDKATGLGIPVITVDTDEPESERVAYVGTDNERAGRQMGELVVQASGE 171 QGL ++ +I++A +GIP+ITVD+D P S+RVAYVGTDN AG G ++ S Sbjct: 110 TQGLEENEFTPIINEAARMGIPIITVDSDAPHSKRVAYVGTDNYAAGYMAGRELIAKSAG 169 Query: 172 RGDIGVLISNEQAENQRLRLAGFRSVIGRYPGLQIVEIRSSDISRLQAAQQAQKMLIQSP 231 R ++ ++ + A NQ+ R+ GF+ + YPG+ I++I S+ISR+Q+A A + + P Sbjct: 170 RAEVALITGSFTASNQKDRVRGFKDAVKTYPGIHIIDIAESNISRIQSAASAYTLAQKYP 229 Query: 232 NIRFMVGFSSMDGLGFLEAKERLGA----TGLHIFAFDDMEETVDAIRQSKIESAVVQQP 287 I VG S++DGLG + + +G+ T + I AFDD+ ET+ I Q IES +VQQP Sbjct: 230 EIDTFVGTSALDGLGIAQMLKEMGSETLKTPIRIIAFDDLPETLTLINQGVIESTIVQQP 289 Query: 288 VEMGEQAIEQLHDYFSGSPPPTLMYTKTYVITKESLN 324 MG +++ L DY G T+ T VI +E L Sbjct: 290 FIMGRESVNLLMDYLKGEKIVTVYNTDVKVIHREDLT 326 >Q9K692.1 Q9K692_BACHD Sugar ABC transporter (Sugar-binding protein) Length = 332 Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 112/298 (37%), Positives = 180/298 (60%), Gaps = 1/298 (0%) Query: 27 SFLQIHRLVEPLKXXXXXXXXXXXKVVLISQELDNYFWRSIEQGARKAAASYAMRLDYIG 86 SF+Q+ R VE VLI++E +N +WR +E+GAR+A + + ++Y Sbjct: 24 SFVQVTR-VETNVPSSTSISLPSSHFVLIAEEENNSYWRLVEKGAREAENQFDVLVEYKA 82 Query: 87 PDRINPAEQIKLLDKTIASKPDAILIQGLNNPDYRRLIDKATGLGIPVITVDTDEPESER 146 P R NP EQ+KL+D I++K D I++Q +N + LI+KA GIPVIT+DTD P S R Sbjct: 83 PKRSNPEEQLKLIDMAISAKVDGIIVQAVNEEMFTPLINKAVDAGIPVITIDTDAPRSNR 142 Query: 147 VAYVGTDNERAGRQMGELVVQASGERGDIGVLISNEQAENQRLRLAGFRSVIGRYPGLQI 206 VAY+GTDN +G G+ ++ + V+ + ++ +Q+LR+ GF +I P + + Sbjct: 143 VAYIGTDNYYSGTIAGKAMLDDMEGDIHVAVITGSLESSHQKLRVQGFIDMISNEPRVTL 202 Query: 207 VEIRSSDISRLQAAQQAQKMLIQSPNIRFMVGFSSMDGLGFLEAKERLGATGLHIFAFDD 266 VE+ +S+ISRL+A +A +++ + P+I G S++DG+G + A E+LG L++ AFD Sbjct: 203 VEVEASNISRLEAELKAHQLMEEHPHINAFYGTSALDGIGIVAAAEKLGLDDLYVIAFDT 262 Query: 267 MEETVDAIRQSKIESAVVQQPVEMGEQAIEQLHDYFSGSPPPTLMYTKTYVITKESLN 324 + E + + Q KI++ VVQ+P EMG +++E L D G P +T T +I K L+ Sbjct: 263 LPENLSLLEQEKIDAIVVQEPFEMGLKSVELLLDIREGQPYSMTNHTHTSIIRKPDLS 320 >C5D8H8.1 C5D8H8_9BACI Periplasmic binding protein/LacI transcriptional regulator Length = 337 Score = 201 bits (512), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 98/272 (36%), Positives = 166/272 (61%), Gaps = 1/272 (0%) Query: 53 VLISQELDNYFWRSIEQGARKAAASYAMRLDYIGPDRINPAEQIKLLDKTIASKPDAILI 112 VL+ +ELDN +WR +E+GA+ AA + L+Y+GP + N E I +L+K ASK D I+ Sbjct: 53 VLVPEELDNDYWRLVEKGAKAAAKETGVHLEYVGPRQANIDEHIHILEKAAASKVDGIMT 112 Query: 113 QGLNNPDYRRLIDKATGLGIPVITVDTDEPESERVAYVGTDNERAGRQMGELVVQASGER 172 QGL ++ +I++ IPV+T+DTD P S+R AY+GTDN AG G+ + + + + Sbjct: 113 QGLTEKEFTPVINRIIEKNIPVVTIDTDAPTSKRTAYIGTDNYYAGFIAGKALAEDTHGK 172 Query: 173 GDIGVLISNEQAENQRLRLAGFRSVIGRYPGLQIVEIRSSDISRLQAAQQAQKMLIQSPN 232 ++ ++ + A +Q+LR+ GF+ + G++I+ I S+I+R+QAA++A +L + P Sbjct: 173 ANVAIITGSLTASHQKLRVQGFKDAVKNEKGIRIIAIEESNITRIQAAEKAYSILKKHPE 232 Query: 233 IRFMVGFSSMDGLGFLEAKERLG-ATGLHIFAFDDMEETVDAIRQSKIESAVVQQPVEMG 291 + G S++D +G + E+ +I FD + ET+ +R+ I + VVQ+P EMG Sbjct: 233 VNAFYGTSALDAIGIAKVIEQFHREKETYIIGFDTLPETIHYLRKGTIHATVVQEPYEMG 292 Query: 292 EQAIEQLHDYFSGSPPPTLMYTKTYVITKESL 323 QA++ + D G+ P++ T+T VI K+ L Sbjct: 293 YQAVKAMVDIIKGNDVPSVTNTETKVIRKQDL 324 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,720,194,080 Number of extensions: 66921556 Number of successful extensions: 192324 Number of sequences better than 1.0e-05: 1622 Number of HSP's gapped: 191561 Number of HSP's successfully gapped: 1624 Length of query: 332 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 196 Effective length of database: 1,779,438,163 Effective search space: 348769879948 Effective search space used: 348769879948 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)