BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0043.p (258 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK09.1 B3KK09_9BACI Response regulator receiver 349 1e-94 C4V3H9.1 C4V3H9_9FIRM Response regulator 158 3e-37 Q9K6P9.1 Q9K6P9_BACHD Two-component response regulator 154 8e-36 C3J337.1 C3J337_9BACI Two component transcriptional regulator, A... 143 2e-32 B7YCL8.1 B7YCL8_9BACI Two component transcriptional regulator, A... 143 2e-32 >B3KK09.1 B3KK09_9BACI Response regulator receiver Length = 261 Score = 349 bits (896), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 163/257 (63%), Positives = 206/257 (80%), Gaps = 1/257 (0%) Query: 1 LVDDEAPILGNLRRVLPWQEMGMEIYGMARSGMEALRIAEEQAPDLVLCDIRMPVMDGLT 60 LVDDEAPIL NL +VLPW+EMGM++ G+ARSGMEAL +A++ PDL+LCDIRMPVMDGLT Sbjct: 6 LVDDEAPILNNLSKVLPWEEMGMKVVGLARSGMEALEVADQYNPDLILCDIRMPVMDGLT 65 Query: 61 FVGKLREMGLDSEVLLLSGYQEFDYAREAIRLGVKEYICKPIHYEELGNKVREIGTRIRS 120 F+ K+RE G +E+ LL+GYQEF+YAREAI+LGVK+YI KPIHY EL K+REIG IR Sbjct: 66 FITKIREKGSRAEIFLLTGYQEFEYAREAIKLGVKDYISKPIHYGELEMKIREIGEEIRK 125 Query: 121 KQYKDKLYNSIPLFQELTPAEDSAKKTPDQLMNQAAQYISERLSFDLGIEEVAHKIGISS 180 K+ K+K YN++ L E P ++ KKTP+QL++ A +YI+ + DLGIEE++ +GISS Sbjct: 126 KRAKEKYYNTVSLIDE-APNPEAVKKTPEQLVSSALEYINTHMGQDLGIEELSEHLGISS 184 Query: 181 SYFCLLFKNRFAMTFVEYVTLQRMEAAKFMLASSDKSIAAISTGVGYQERRYFTKVFQKQ 240 SYFCLLFKN +TFVEY+T QRMEAAKF+L +SDK+IA I + VGY ERRYFTKVFQK Sbjct: 185 SYFCLLFKNHVGLTFVEYLTRQRMEAAKFLLVNSDKNIAQIGSFVGYHERRYFTKVFQKA 244 Query: 241 TGMTPKEYRDLHKVPEI 257 TGMTP E+R++ P + Sbjct: 245 TGMTPSEFREMSGEPSL 261 >C4V3H9.1 C4V3H9_9FIRM Response regulator Length = 255 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/256 (35%), Positives = 144/256 (56%), Gaps = 18/256 (7%) Query: 1 LVDDEAPILGNLRRVLPWQEMGMEIYGMARSGMEALRIAEEQAPDLVLCDIRMPVMDGLT 60 ++DDE + ++ PW++ G E+ G A SGME + +A E PD+++ DI+MP + GL Sbjct: 6 VIDDEPMQRQGIVQLTPWKDFGAEVVGAAGSGMEGILMAREHRPDILIVDIKMPGLTGLE 65 Query: 61 FVGKLREMGLDSEVLLLSGYQEFDYAREAIRLGVKEYICKPIHYEELGNKVREIGTRIRS 120 + +LR LD+E ++LSGY EF+YA+ AI LGV Y+ KP+ EEL ++ I Sbjct: 66 VISRLRGE-LDAEYIILSGYSEFEYAQRAISLGVCAYLLKPLDDEELAAAMKLAAGHIMG 124 Query: 121 KQY-------KDKLYNSIPLFQELTPAEDSAKKTPDQLMNQAAQYISERLSFDLGIEEVA 173 ++ ++ + +I L P E+ + M ++I+E ++ + EVA Sbjct: 125 RRTENIHPDQREDMCGNIAL-----PKEEPVRGYLLHAMRHMEEHIAEPIT----VREVA 175 Query: 174 HKIGISSSYFCLLFKNRFAMTFVEYVTLQRMEAAKFMLASSDKSIAAISTGVGYQERRYF 233 ++G+S SY LF +R +F Y+T R+ A +L SD + A++ GYQ+ RYF Sbjct: 176 DELGLSVSYLHKLF-SRCGTSFSSYLTECRLRRAGHLLRESDAKVYAVAAACGYQDTRYF 234 Query: 234 TKVFQKQTGMTPKEYR 249 +K+FQK GM P EYR Sbjct: 235 SKIFQKHMGMKPTEYR 250 >Q9K6P9.1 Q9K6P9_BACHD Two-component response regulator Length = 257 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 140/250 (56%), Gaps = 5/250 (2%) Query: 1 LVDDEAPILGNLRRVL-PWQEMGMEIYGMARSGMEALRIAEEQAPDLVLCDIRMPVMDGL 59 +VDDE L+R L W + + A S EA+ E+ DL++ DIRMP M GL Sbjct: 8 IVDDEPRSRRGLKRTLEAWSPKLLNVQTAA-SAKEAITRLNEETIDLIITDIRMPEMSGL 66 Query: 60 TFVGKLREMGLDSEVLLLSGYQEFDYAREAIRLGVKEYICKPIHYEELGNKVREIGTRIR 119 V L+E +++S Y EF+YA A+ LGV+ Y+ KP+ E+L + + + ++ Sbjct: 67 HLVKALQEQNPKPVCIVISAYSEFEYAHTALELGVRHYLLKPVKKEKL---IEAVESALQ 123 Query: 120 SKQYKDKLYNSIPLFQELTPAEDSAKKTPDQLMNQAAQYISERLSFDLGIEEVAHKIGIS 179 K+ +D+ ++ E A + + + +++A YI L +G+++VA + ++ Sbjct: 124 MKKEQDRFGQVEKVWDEKIDAIEKERLSSSDSIHEALHYIDAHLDQKIGLKDVAKSVHLN 183 Query: 180 SSYFCLLFKNRFAMTFVEYVTLQRMEAAKFMLASSDKSIAAISTGVGYQERRYFTKVFQK 239 SY LFK + MTF EY+T +R++ AK +L S+D+ I+ I+ GYQ +YF K+F++ Sbjct: 184 PSYLSALFKEKTNMTFSEYLTRKRLQHAKHLLVSTDRPISDIAEKCGYQTAKYFIKIFKE 243 Query: 240 QTGMTPKEYR 249 GMTP +YR Sbjct: 244 HEGMTPTQYR 253 >C3J337.1 C3J337_9BACI Two component transcriptional regulator, AraC family Length = 259 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 143/253 (56%), Gaps = 3/253 (1%) Query: 1 LVDDEAPILGNLRRVLPWQEMGMEIYGMARSGMEALRIAEEQAPDLVLCDIRMPVMDGLT 60 +VDDE ++RVL G A +G EAL I ++ ++L DIRMP + GL Sbjct: 8 VVDDEPRAREGMKRVLEKWASGKHRIITAANGQEALAILRQERVHVLLTDIRMPEITGLE 67 Query: 61 FVGKLREMGLDSEVLLLSGYQEFDYAREAIRLGVKEYICKPIHYEELGNKVREIGTRIRS 120 + +RE V+++S Y +FDYA++AI LGV Y+ KP+ EL V E + Sbjct: 68 VLEGMRENEDSPVVIIISAYPDFDYAQKAISLGVLNYLLKPVKKSELFEAV-ERAIHVSE 126 Query: 121 KQYKDKLYNSIPLFQELTPAEDSAKKTPDQLMNQAAQYISERLSFDLGIEEVAHKIGISS 180 ++ ++++ + + +L A D +T + + +A Q+I +RL D+ +++VA + ++ Sbjct: 127 QKERERVMKQL-IDDKLINALDRHPQTREPI-REAIQFIDQRLKDDISLKDVAEHVHLNP 184 Query: 181 SYFCLLFKNRFAMTFVEYVTLQRMEAAKFMLASSDKSIAAISTGVGYQERRYFTKVFQKQ 240 SYF LFK + +TF EY+T +RM+ AK +L ++D ++A I+ GY+ +YF +F++ Sbjct: 185 SYFSTLFKEQMQLTFSEYLTRRRMQRAKELLMTTDMTVAEIAEECGYRTAKYFIHLFKEM 244 Query: 241 TGMTPKEYRDLHK 253 G TP YR K Sbjct: 245 EGKTPSSYRKSQK 257 >B7YCL8.1 B7YCL8_9BACI Two component transcriptional regulator, AraC family Length = 259 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 143/253 (56%), Gaps = 3/253 (1%) Query: 1 LVDDEAPILGNLRRVLPWQEMGMEIYGMARSGMEALRIAEEQAPDLVLCDIRMPVMDGLT 60 +VDDE ++RVL G A +G EAL I ++ ++L DIRMP + GL Sbjct: 8 VVDDEPRAREGMKRVLEKWASGKHRIITAANGQEALAILRQERVHVLLTDIRMPEITGLE 67 Query: 61 FVGKLREMGLDSEVLLLSGYQEFDYAREAIRLGVKEYICKPIHYEELGNKVREIGTRIRS 120 + +RE V+++S Y +FDYA++AI LGV Y+ KP+ EL V E + Sbjct: 68 VLEGMRENEDSPVVIIISAYPDFDYAQKAISLGVLNYLLKPVKKSELFEAV-ERAIHVSE 126 Query: 121 KQYKDKLYNSIPLFQELTPAEDSAKKTPDQLMNQAAQYISERLSFDLGIEEVAHKIGISS 180 ++ ++++ + + +L A D +T + + +A Q+I +RL D+ +++VA + ++ Sbjct: 127 QKERERVMKQL-IDDKLINALDRHPQTREPI-REAIQFIDQRLKDDISLKDVAEHVHLNP 184 Query: 181 SYFCLLFKNRFAMTFVEYVTLQRMEAAKFMLASSDKSIAAISTGVGYQERRYFTKVFQKQ 240 SYF LFK + +TF EY+T +RM+ AK +L ++D ++A I+ GY+ +YF +F++ Sbjct: 185 SYFSTLFKEQMQLTFSEYLTRRRMQRAKELLMTTDMTVAEIAEECGYRTAKYFIHLFKEM 244 Query: 241 TGMTPKEYRDLHK 253 G TP YR K Sbjct: 245 EGKTPSSYRKSQK 257 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,461,999,879 Number of extensions: 57585484 Number of successful extensions: 226526 Number of sequences better than 1.0e-05: 10868 Number of HSP's gapped: 237805 Number of HSP's successfully gapped: 11328 Length of query: 258 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 125 Effective length of database: 1,807,701,208 Effective search space: 225962651000 Effective search space used: 225962651000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)