BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0041.p (276 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK07.1 B3KK07_9BACI Binding-protein-dependent transport system... 381 e-104 B1D771.1 B1D771_9BACL Binding-protein-dependent transport system... 230 8e-59 B8CXP3.1 B8CXP3_HALOH Binding-protein-dependent transport system... 192 3e-47 B1DCZ6.1 B1DCZ6_9BACL Binding-protein-dependent transport system... 190 1e-46 A8VR98.1 A8VR98_9BACI ABC-type sugar transport system permease c... 190 1e-46 >B3KK07.1 B3KK07_9BACI Binding-protein-dependent transport systems inner membrane component Length = 275 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/275 (68%), Positives = 219/275 (79%) Query: 2 VRSLKKGIPHAALLGYXXXXXXXXXXXXXSSVKKDNNAIALNPFGIPKEFVFNNYVEAWV 61 +R+LKK IPH L+ Y SSVK DN +IA NPFG+P VF+NYV AWV Sbjct: 1 MRALKKLIPHIFLMAYLLVILYPFLFVLFSSVKVDNQSIATNPFGLPSTLVFDNYVNAWV 60 Query: 62 NAKISTYFFNXXXXXXXXXXXXXXXXXMFAFAVTRMRQGKWNKILFSLVLIGMLIPNNAL 121 +AKISTYF+N M AFAVTRMR + + I+F +LIGMLIPNN+L Sbjct: 61 SAKISTYFWNSLYIGVLSACLSILFAAMLAFAVTRMRYNRISAIIFQCILIGMLIPNNSL 120 Query: 122 MLPIYTIVRKLHILNTHWALIIPYIANAIPFTIIILAAFMRSLPSEIEEAAVVDGLKAPG 181 +LPIY I+R+L ILNTH ALI+PY+ANAIPF++IILAAFMRSLP EIEEAAV+DGL++ G Sbjct: 121 LLPIYGIMRQLDILNTHMALILPYVANAIPFSVIILAAFMRSLPGEIEEAAVIDGLRSGG 180 Query: 182 IFARIIVPLTVPAMVTVFIVNFLGNWNEFLLANYFLSNDELRTLPVGMVQFRDQYQMNYA 241 +FARII+PLTVPA+VTVFI+NFLGNWNEFLLANYFLSNDELRTLPVGMV FRD Y MNYA Sbjct: 181 LFARIILPLTVPAIVTVFIINFLGNWNEFLLANYFLSNDELRTLPVGMVGFRDAYNMNYA 240 Query: 242 QMSAGIVYSVLPVVIIYAILQEKIIEGVTAGSVKG 276 QMSAGIV+SVLPV+IIYA+LQEKIIEGVTAGSVKG Sbjct: 241 QMSAGIVFSVLPVLIIYAVLQEKIIEGVTAGSVKG 275 >B1D771.1 B1D771_9BACL Binding-protein-dependent transport systems inner membrane component Length = 285 Score = 230 bits (587), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 108/271 (39%), Positives = 172/271 (63%), Gaps = 6/271 (2%) Query: 11 HAALLGYXXXXXXXXXXXXXSSVKKDNNAIALNPFGIPKEFVFNNYVEAWVNAKISTYFF 70 H +L+ Y SS K I +N + PK F F+NY +AW AKI Y Sbjct: 16 HFSLIAYIIATLFPLVWLLMSSFKTSRE-ITVNTWAFPKHFNFDNYRQAWETAKIGLYAL 74 Query: 71 NXXXXXXXXXXXXXXXXXMFAFAVTRMRQGKWNKILFSLVLIGMLIPNNALMLPIYTIVR 130 N M +FA++RM+ + NK ++ +L G+L+P AL +P+Y +++ Sbjct: 75 NSVKVTVIACLVTLLFAAMTSFALSRMKYSRMNKAVYQFILFGLLVPPGALFIPLYRLIQ 134 Query: 131 KL-----HILNTHWALIIPYIANAIPFTIIILAAFMRSLPSEIEEAAVVDGLKAPGIFAR 185 ++ H+ N+H LI+ Y A+P T+ I+ AFM S+P E+EEA ++DGL A G+F + Sbjct: 135 QMSLGGIHLYNSHVGLILVYCTYALPITVFIIYAFMLSIPGELEEAGIMDGLTAGGLFVK 194 Query: 186 IIVPLTVPAMVTVFIVNFLGNWNEFLLANYFLSNDELRTLPVGMVQFRDQYQMNYAQMSA 245 +++P+++PA+VTV I+NF+GNWNE++L+ F++++ LRTLP GM F D Y+ N+A +SA Sbjct: 195 VVLPISLPALVTVTILNFIGNWNEYILSQLFITSESLRTLPTGMASFNDGYRTNFAALSA 254 Query: 246 GIVYSVLPVVIIYAILQEKIIEGVTAGSVKG 276 ++ S++PV+++Y LQ++IIEG+TAGSVKG Sbjct: 255 AVIMSIVPVLVVYFFLQKQIIEGMTAGSVKG 285 >B8CXP3.1 B8CXP3_HALOH Binding-protein-dependent transport systems inner membrane component Length = 281 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 144/242 (59%), Gaps = 1/242 (0%) Query: 35 KDNNAIALNPFGIPKEFVFNNYVEAWVNAKISTYFFNXXXXXXXXXXXXXXXXXMFAFAV 94 K I +N F P NNY EAW A + F N + ++ + Sbjct: 41 KTEQEITMNSFSFPNRLYLNNYFEAWKTAHLGNRFINSIIVSIVAMVVTVLLGALVSYFI 100 Query: 95 TRMRQGKWNKILFSLVLIGMLIPNNALMLPIYTIVRKLHILNTHWALIIPYIANAIPFTI 154 R Q KW IL+ + + GML+P + ++P++ ++RK+ ++NT WALI PYI +P TI Sbjct: 101 ARF-QFKWKNILYVIFIFGMLVPIHGTLVPMFILMRKIGLINTRWALIFPYIGFNLPLTI 159 Query: 155 IILAAFMRSLPSEIEEAAVVDGLKAPGIFARIIVPLTVPAMVTVFIVNFLGNWNEFLLAN 214 IL ++M+ LP+E+EEAAVVDG IF I+P++ PA+ TV I+NF+ NWNEF A Sbjct: 160 FILVSYMKGLPTEVEEAAVVDGCGIFKIFWSFILPMSRPALATVSILNFIFNWNEFSFAL 219 Query: 215 YFLSNDELRTLPVGMVQFRDQYQMNYAQMSAGIVYSVLPVVIIYAILQEKIIEGVTAGSV 274 +++D L+T+P+G+ F +Y NY A + ++P++I Y I++E +I+G+++G+V Sbjct: 220 VLINSDSLKTIPLGLASFAGKYSTNYGVQMAALTMVLIPIIIFYLIMEEHLIKGMSSGAV 279 Query: 275 KG 276 KG Sbjct: 280 KG 281 >B1DCZ6.1 B1DCZ6_9BACL Binding-protein-dependent transport systems inner membrane component Length = 291 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 97/245 (39%), Positives = 149/245 (60%), Gaps = 1/245 (0%) Query: 32 SVKKDNNAIALNPFGIPKEFVFNNYVEAWVNAKISTYFFNXXXXXXXXXXXXXXXXXMFA 91 S+K + ++ F +P + NY A + Y N + + Sbjct: 48 SLKTNEEILSGQFFALPHALQWGNYSAAMESGNYVKYLLNSLKVTLITMVGVLFLSSLVS 107 Query: 92 FAVTRMRQGKWNKILFSLVLIGMLIPNNALMLPIYTIVRKLHILNTHWALIIPYIANAIP 151 FA++R + K+ + + + LIGM+IP A +LP+ I + +HILNTHW+LI+PYIA P Sbjct: 108 FAISRFKW-KYGQAVMVVFLIGMMIPMQATLLPLMIIFKNMHILNTHWSLILPYIAFQTP 166 Query: 152 FTIIILAAFMRSLPSEIEEAAVVDGLKAPGIFARIIVPLTVPAMVTVFIVNFLGNWNEFL 211 + IL+ FM+S+P+EIEE+A+VDG IF II+P++VP M+TV I+ F+ WNE++ Sbjct: 167 IAVFILSGFMKSIPNEIEESAIVDGAGVFRIFWNIILPVSVPPMMTVCILTFINIWNEYI 226 Query: 212 LANYFLSNDELRTLPVGMVQFRDQYQMNYAQMSAGIVYSVLPVVIIYAILQEKIIEGVTA 271 LA F+S++ L+TLP G+ F QY +NY + A +V LPV+IIY +L +KI +G+ A Sbjct: 227 LAATFISSERLKTLPFGVYSFVSQYSVNYGAIGAFLVLGALPVIIIYFLLADKITKGMVA 286 Query: 272 GSVKG 276 G+VKG Sbjct: 287 GAVKG 291 >A8VR98.1 A8VR98_9BACI ABC-type sugar transport system permease component-like protein Length = 295 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 148/245 (60%), Gaps = 1/245 (0%) Query: 32 SVKKDNNAIALNPFGIPKEFVFNNYVEAWVNAKISTYFFNXXXXXXXXXXXXXXXXXMFA 91 S+K + L P +P++ + NY+ W + I YFFN Sbjct: 52 SLKDNQEVFNLPPLALPQDPNWGNYLRVWTDGNIGLYFFNSIIVTGSAVILTILLASFVT 111 Query: 92 FAVTRMRQGKWNKILFSLVLIGMLIPNNALMLPIYTIVRKLHILNTHWALIIPYIANAIP 151 FA+TRM K NKI+ +L +IG++IP ++ ++P+++ + ++NTH A+I+ Y A +P Sbjct: 112 FAITRMNW-KLNKIVLALFMIGLMIPVHSTLIPLFSFFLNIGLMNTHPAIILTYTAFNLP 170 Query: 152 FTIIILAAFMRSLPSEIEEAAVVDGLKAPGIFARIIVPLTVPAMVTVFIVNFLGNWNEFL 211 TI+IL F ++P E+EEAA+VDG +F +II+PLT P + T I+N + NWNEF+ Sbjct: 171 LTIMILLGFYYTIPRELEEAAIVDGCSIHRMFFQIILPLTAPVVATTAIINMIYNWNEFV 230 Query: 212 LANYFLSNDELRTLPVGMVQFRDQYQMNYAQMSAGIVYSVLPVVIIYAILQEKIIEGVTA 271 N F+S+D L+TL VG+ F QY ++ + A +V SVLP++I + L +I+EG+TA Sbjct: 231 FVNTFISSDSLKTLTVGIQNFIGQYSTDWGAIGATLVISVLPLLIAFVFLSNRIVEGITA 290 Query: 272 GSVKG 276 GSVKG Sbjct: 291 GSVKG 295 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,362,268,961 Number of extensions: 48866453 Number of successful extensions: 182281 Number of sequences better than 1.0e-05: 6052 Number of HSP's gapped: 175967 Number of HSP's successfully gapped: 6053 Length of query: 276 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 142 Effective length of database: 1,798,280,193 Effective search space: 255355787406 Effective search space used: 255355787406 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)