BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0040.p (294 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK06.1 B3KK06_9BACI Binding-protein-dependent transport system... 387 e-106 B1D772.1 B1D772_9BACL Binding-protein-dependent transport system... 198 5e-49 Q2BFH7.1 Q2BFH7_9BACI Sugar ABC transporter permease 182 4e-44 Q5WKX8.1 Q5WKX8_BACSK Sugar ABC transporter permease 181 8e-44 Q8ES68.1 Q8ES68_OCEIH Sugar ABC transporter permease 173 2e-41 >B3KK06.1 B3KK06_9BACI Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust. Identities = 191/294 (64%), Positives = 227/294 (77%) Query: 1 MNKSLRNPLVFTXXXXXXXXXXXXXXXXXXXXXXXXXXTSWNGVSDTVKFTGLSNFEKAF 60 MN++LRNPL++ TSWNG+S VK+ GL N+ A Sbjct: 1 MNRALRNPLIYIVFVLPAFLLFLAFFIYPIFTAFDNSFTSWNGISKDVKYIGLDNYVTAL 60 Query: 61 GDDRFWVSVKNNGWFILFSVFIQVPLIVLFSLLIANVKKLKGLYKTAVFMPSIMSTAVIG 120 DD FW +V+NN +FILFS IQVP+IV+FSLLIANVK+LKGLYKTAVF PSIMSTAVIG Sbjct: 61 NDDAFWKAVRNNVYFILFSCLIQVPIIVVFSLLIANVKRLKGLYKTAVFAPSIMSTAVIG 120 Query: 121 ILWGFIYEPNIGLFNKVLGIVGIEPVYWLSDERFAMLSILITNAWQWTGFYIVMVLAAIL 180 ILWGFIY P+ GL N++LG+VGIEP+YWLSD ++AM++ILITNAWQWTGFYIVMVLAAIL Sbjct: 121 ILWGFIYNPDFGLMNEMLGLVGIEPIYWLSDRKWAMIAILITNAWQWTGFYIVMVLAAIL 180 Query: 181 SIPGELDEAAAIDGASRFQRATRXXXXXXXXXXXXXXXXXXAGAMKAADIVIVMTKGGPA 240 SIP ELDEAAAIDGA+ QRAT+ AGAMKAADI++VMTKGGPA Sbjct: 181 SIPKELDEAAAIDGATGVQRATKITLPLIMPIISVVIMLSIAGAMKAADIILVMTKGGPA 240 Query: 241 GSTEVMATYMIKYAITNFKYGYGNAIAVLIFIFTLVVTVLYQLLFARRNERIEY 294 GST+VMATYMI+YAIT+FK+G+GN+IAVLIF+FT++VTVLYQ+L ARRNERIEY Sbjct: 241 GSTDVMATYMIRYAITSFKHGFGNSIAVLIFLFTIIVTVLYQVLIARRNERIEY 294 >B1D772.1 B1D772_9BACL Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 198 bits (503), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 113/296 (38%), Positives = 167/296 (56%), Gaps = 5/296 (1%) Query: 1 MNKSLRNPLVFTXXXXXXXXXXXXXXXXXXXXXXXXXXTSWNGVSDTVKFTGLSNFEKAF 60 MNK+LRNP + W+G++ V F GL NF + + Sbjct: 1 MNKALRNPYTYIAFILPTLVLYALFFVYPVIVSFVYGFFQWDGITQKV-FIGLDNFTRLW 59 Query: 61 GDDRFWVSVKNNGWFILFSVFIQVPLIVLFSLLIANVKKLKGLYKTAVFMPSIMSTAVIG 120 D F S+ NN +F+ FS+ + +PL+ L S+LI+ V +++ YK+AVF+P ++STA + Sbjct: 60 KDHVFLKSLTNNFYFMAFSLIVNIPLVFLISILISKVGRMRDFYKSAVFVPVVISTATVA 119 Query: 121 ILWGFIYEPNIGLFNKVLGIVGIEP--VYWLSDERFAMLSILITNAWQWTGFYIVMVLAA 178 IL+G +Y + GL N+ + +V + WLSD + AMLSILI NAWQ GF+IV+ LAA Sbjct: 120 ILFGVLYNYDSGLINQFIRLVAPDSWAREWLSDPKLAMLSILIANAWQNIGFFIVLCLAA 179 Query: 179 ILSIPGELDEAAAIDGASRFQRATRXXXXXXXXXXXXXXXXXXAGAMKAADIVIVMTKGG 238 IL+IP E+ EA+ IDG + + +G MK DIV +MT GG Sbjct: 180 ILNIPKEIVEASKIDGVNGWSETWLITLPLIRPVLFVMLLLTVSGTMKVLDIVQIMTNGG 239 Query: 239 PAGSTEVMATYMIKYAITNFKYGYGNAIAVLIFIFTLVVTVLYQLLFARRNERIEY 294 P STEVM+TYM+K + + GYG++I V +FI LV+T + Q L ++E ++Y Sbjct: 240 PFQSTEVMSTYMLKVGFRSMELGYGSSIGVTMFILILVLTGILQKL--TKHEEVQY 293 >Q2BFH7.1 Q2BFH7_9BACI Sugar ABC transporter permease Length = 291 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 102/253 (40%), Positives = 153/253 (60%), Gaps = 7/253 (2%) Query: 40 SWNGVSDTVKFTGLSNFEKAFGDDRFWVSVKNNGWFILFSVFIQVPLIVLFSLLIANVKK 99 WNG S +KF GL NF + F D FW SVKNN + +L SVF QVP I LF L+ N +K Sbjct: 40 EWNGFS-AMKFVGLDNFVQLFQDSLFWNSVKNNIYVVLASVFGQVP-IALFIALLLN-RK 96 Query: 100 LKGL--YKTAVFMPSIMSTAVIGILWGFIYEPNIGLFNKVLGIVGIEPVY--WLSDERFA 155 +KGL ++T F+P ++ST VI + W I+ GL N++L VG++ + WL D +F+ Sbjct: 97 IKGLKIFRTIGFLPVVLSTVVISLTWSLIFNSEQGLINELLRAVGLDFLAQNWLGDTKFS 156 Query: 156 MLSILITNAWQWTGFYIVMVLAAILSIPGELDEAAAIDGASRFQRATRXXXXXXXXXXXX 215 M+++L+ WQ+ G Y+++ LAA+ ++P E+ EAA IDGAS + + Sbjct: 157 MIAVLVVVIWQFVGLYLIIFLAALQNVPQEVLEAAKIDGASEWTTTWKITIPMIWDTIIV 216 Query: 216 XXXXXXAGAMKAADIVIVMTKGGPAGSTEVMATYMIKYAITNFKYGYGNAIAVLIFIFTL 275 +G++K D++ VMT GGPA ST+VMA YM + +YGYG+A++V+IF F+L Sbjct: 217 AVILAISGSLKTFDLIYVMTHGGPAHSTDVMALYMFNETFSKLQYGYGSAVSVVIFFFSL 276 Query: 276 VVTVLYQLLFARR 288 ++ L R+ Sbjct: 277 ILIYTVTKLLGRK 289 >Q5WKX8.1 Q5WKX8_BACSK Sugar ABC transporter permease Length = 308 Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 143/252 (56%) Query: 40 SWNGVSDTVKFTGLSNFEKAFGDDRFWVSVKNNGWFILFSVFIQVPLIVLFSLLIANVKK 99 WNGV F GL N+ D FW +++NN +L SVF+Q+PL ++ +L++ + Sbjct: 53 EWNGVQPQRTFIGLDNYVTLLKDATFWQALQNNSLLVLVSVFVQIPLGLIMALVLFSPVI 112 Query: 100 LKGLYKTAVFMPSIMSTAVIGILWGFIYEPNIGLFNKVLGIVGIEPVYWLSDERFAMLSI 159 K L F+P +MST IG+LW F+Y+P G N++L IVGI+ + WL+D AM++I Sbjct: 113 GKRLLNVIYFLPYLMSTVAIGLLWIFMYDPINGPINQLLQIVGIDAIPWLADANVAMIAI 172 Query: 160 LITNAWQWTGFYIVMVLAAILSIPGELDEAAAIDGASRFQRATRXXXXXXXXXXXXXXXX 219 L+ WQ++ FY+++ AA++ IP EL EAA+IDGA+ Q+ Sbjct: 173 LVVVIWQFSPFYMILFKAAMVGIPNELYEAASIDGANGRQQFFYITLPALVPTIVSSSVL 232 Query: 220 XXAGAMKAADIVIVMTKGGPAGSTEVMATYMIKYAITNFKYGYGNAIAVLIFIFTLVVTV 279 G++KA DI +MT GGP G+TE++ TYM K F GY + +A +FI + Sbjct: 233 AVVGSLKAFDIFYIMTGGGPGGATEILGTYMYKQGFIQFSMGYASTVAAAMFIIAFICVA 292 Query: 280 LYQLLFARRNER 291 + Q + +R +R Sbjct: 293 IIQFVEYQRKKR 304 >Q8ES68.1 Q8ES68_OCEIH Sugar ABC transporter permease Length = 291 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 148/253 (58%), Gaps = 7/253 (2%) Query: 40 SWNGVSDTVKFTGLSNFEKAFGDDRFWVSVKNNGWFILFSVFIQVPLIVLFSLLIANVKK 99 W+G +D + F GL NF F D FW SVKNN + ++ SV QVP+ + F+LL+ +K Sbjct: 40 EWDGFTD-MTFIGLDNFRNLFEDPLFWNSVKNNLYVVIASVLGQVPIALFFALLLN--RK 96 Query: 100 LKGL--YKTAVFMPSIMSTAVIGILWGFIYEPNIGLFNKVLGIVGI--EPVYWLSDERFA 155 +KG+ ++T F+P ++ST VI + W IY G+ N+ L +G+ WL D ++ Sbjct: 97 IKGVKFFRTVGFLPVVLSTVVISLTWSLIYNSQNGMLNEFLRNIGLGFMAQNWLGDTKWV 156 Query: 156 MLSILITNAWQWTGFYIVMVLAAILSIPGELDEAAAIDGASRFQRATRXXXXXXXXXXXX 215 M+++L+T WQ+ G Y ++ LAA+ ++P E+ EAA +DGAS + + Sbjct: 157 MIAVLVTVVWQFVGLYFIIFLAALQNVPTEVLEAAKMDGASEWMTTFKITIPMIWDSIIV 216 Query: 216 XXXXXXAGAMKAADIVIVMTKGGPAGSTEVMATYMIKYAITNFKYGYGNAIAVLIFIFTL 275 +G++K D++ VMT GGPA S++VMA YM N +YGYG+A++V IF F+L Sbjct: 217 AVILCISGSLKTFDLIYVMTNGGPAHSSDVMALYMFHETFNNLQYGYGSAVSVFIFFFSL 276 Query: 276 VVTVLYQLLFARR 288 ++ + L ++ Sbjct: 277 ILIFIVTKLLGKK 289 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,426,181,124 Number of extensions: 52331715 Number of successful extensions: 218469 Number of sequences better than 1.0e-05: 5489 Number of HSP's gapped: 209760 Number of HSP's successfully gapped: 5489 Length of query: 294 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 160 Effective length of database: 1,798,280,193 Effective search space: 287724830880 Effective search space used: 287724830880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)