BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0350.0034.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A9U767.1 A9U767_PHYPA Predicted protein                               182   1e-44
B1DIP3.1 B1DIP3_9BACL Extracellular solute-binding protein family 1   172   1e-41
B3K593.1 B3K593_9BACI Extracellular solute-binding protein family 1   166   5e-40

>A9U767.1 A9U767_PHYPA Predicted protein
          Length = 127

 Score =  182 bits (461), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 104/124 (83%)

Query: 1   MAFRYITFDYFSDKGLEALDAILQQRKADGKYFIPPLLDYYAADSDFGKKTKAIYDKYDI 60
           MAFRYITFDYF+DKGLEAL+  +Q+RKA+ KYF+P  L+Y+  DS++GKK  AIYDKYD 
Sbjct: 1   MAFRYITFDYFTDKGLEALEGNIQERKANNKYFVPAPLNYFKDDSEYGKKVAAIYDKYDN 60

Query: 61  VYQYNPDIMGLLDGKPEAQYNTQDYYATMSNVIQELFSKKGTDSKAQLDAAAKTVQEKFF 120
           VY+Y+P++ GLLDGKPEAQY TQDYY  MSNV+QELFSKK TDSK QLD AAK VQ KFF
Sbjct: 61  VYKYDPNLFGLLDGKPEAQYGTQDYYGAMSNVVQELFSKKDTDSKKQLDDAAKLVQTKFF 120

Query: 121 DTIK 124
           D IK
Sbjct: 121 DEIK 124


>B1DIP3.1 B1DIP3_9BACL Extracellular solute-binding protein family 1
          Length = 483

 Score =  172 bits (435), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 105/124 (84%)

Query: 1   MAFRYITFDYFSDKGLEALDAILQQRKADGKYFIPPLLDYYAADSDFGKKTKAIYDKYDI 60
           MAFRYITFDYF+D  L +++  +Q RK +GKYFIPP ++Y++ DS++GKK +AI+DKYD 
Sbjct: 359 MAFRYITFDYFTDDYLTSIEKDIQARKTEGKYFIPPHINYFSPDSEYGKKVQAIFDKYDN 418

Query: 61  VYQYNPDIMGLLDGKPEAQYNTQDYYATMSNVIQELFSKKGTDSKAQLDAAAKTVQEKFF 120
           VY+YN +   LLDGKPEAQYNTQ+YY +M+NV+QE+FSKKGTD++AQLDAAAK +Q K++
Sbjct: 419 VYKYNAESNALLDGKPEAQYNTQEYYGSMTNVLQEVFSKKGTDTQAQLDAAAKEMQTKYY 478

Query: 121 DTIK 124
           D IK
Sbjct: 479 DAIK 482


>B3K593.1 B3K593_9BACI Extracellular solute-binding protein family 1
          Length = 482

 Score =  166 bits (421), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 78/124 (62%), Positives = 99/124 (79%)

Query: 1   MAFRYITFDYFSDKGLEALDAILQQRKADGKYFIPPLLDYYAADSDFGKKTKAIYDKYDI 60
           MAFRYITFDYF+D  L++++  +  RKA+GKYF+P  L+Y++ DS++  K KAIYDKYD 
Sbjct: 357 MAFRYITFDYFTDDALKSVEDTINARKAEGKYFVPTPLEYFSDDSEYAAKVKAIYDKYDN 416

Query: 61  VYQYNPDIMGLLDGKPEAQYNTQDYYATMSNVIQELFSKKGTDSKAQLDAAAKTVQEKFF 120
           VY+Y+P +  LL+GKPEAQ+ TQDYYA MSNV+QE FSK+GTDSK QLD  AK VQE FF
Sbjct: 417 VYEYDPQLFSLLEGKPEAQFGTQDYYAAMSNVVQESFSKEGTDSKKQLDETAKLVQENFF 476

Query: 121 DTIK 124
           D I+
Sbjct: 477 DKIE 480


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 743,969,006
Number of extensions: 29302369
Number of successful extensions: 86321
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 86321
Number of HSP's successfully gapped: 3
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)