BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0031.p (290 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K592.1 B3K592_9BACI Binding-protein-dependent transport system... 427 e-118 B1DIP4.1 B1DIP4_9BACL Binding-protein-dependent transport system... 389 e-106 C0V1T3.1 C0V1T3_9BACT Carbohydrate ABC transporter membrane prot... 194 6e-48 B8E1H9.1 B8E1H9_DICTD Binding-protein-dependent transport system... 174 1e-41 B5GAW6.1 B5GAW6_9ACTO ABC transporter permease protein 174 1e-41 >B3K592.1 B3K592_9BACI Binding-protein-dependent transport systems inner membrane component Length = 288 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/286 (72%), Positives = 240/286 (83%) Query: 5 DRGILSEHDLKKTSNKIVYGIMVFFILVMVFTMLYPILMTMFNGLKSNTEVNSFPPHFFP 64 +RGILS DL+K NK VYG MV I VM FTMLYPI MTMFNGLKSN E+N+FPP FFP Sbjct: 3 ERGILSASDLRKPWNKAVYGFMVLCIAVMTFTMLYPIGMTMFNGLKSNQEINTFPPRFFP 62 Query: 65 QEWHFGNLKDALNYIDLLVFLRNTLYIFVGNMAVTLIVLGLASFSISRMNVPYRKVFYFF 124 EWH+ N YIDL +FL+NTL IF GN+ VT++VLG+A+FSISR+ VPY + YFF Sbjct: 63 SEWHWENFPKGWAYIDLPMFLKNTLLIFGGNLLVTILVLGMAAFSISRIRVPYHRAIYFF 122 Query: 125 FLMTLFIPATSYMIPNFVNLKELGLLNQYAAFWLPAGANTFYFLLLKNFFDGIHPEIFEA 184 LMTLFIPA+SYMIPNFVNLKELGLLN Y AFWLPAGAN ++FLL+KNFFDGIH EIFEA Sbjct: 123 ILMTLFIPASSYMIPNFVNLKELGLLNSYWAFWLPAGANAYFFLLIKNFFDGIHLEIFEA 182 Query: 185 ARIDGASEPRSFFSIAVPLSIPIFATLAIFIFSTAWNDWFWPSLVMHSEDKYTLATAIYK 244 ARIDGASE SF IA+PLS+PIFATLAIF FSTAWNDWFWPSLVM ++DKYTLATAIYK Sbjct: 183 ARIDGASEMSSFLRIAIPLSVPIFATLAIFTFSTAWNDWFWPSLVMQTQDKYTLATAIYK 242 Query: 245 YVIAVKALNTNIKFAILFLVSLPPILVFLLFQKFIMRGVALSAVKG 290 YVI ++L++++KF+ILF+V +PPI VFL FQKFIMR V+LSAVKG Sbjct: 243 YVINARSLDSSVKFSILFMVMVPPIFVFLAFQKFIMRSVSLSAVKG 288 >B1DIP4.1 B1DIP4_9BACL Binding-protein-dependent transport systems inner membrane component Length = 290 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/290 (69%), Positives = 235/290 (81%) Query: 1 MKSADRGILSEHDLKKTSNKIVYGIMVFFILVMVFTMLYPILMTMFNGLKSNTEVNSFPP 60 MK DRGILS DLKK I Y IMV ++VM +M+YPIL T+FNGLK+N EVNSFPP Sbjct: 1 MKQLDRGILSSFDLKKKPIFIGYSIMVLVLVVMSCSMVYPILTTLFNGLKTNVEVNSFPP 60 Query: 61 HFFPQEWHFGNLKDALNYIDLLVFLRNTLYIFVGNMAVTLIVLGLASFSISRMNVPYRKV 120 F P EWHF N N+IDL FLRNTLYIF GN+ +T+ VLGLASFS+SR+NVP RK Sbjct: 61 RFLPSEWHFDNFNKGWNFIDLPEFLRNTLYIFGGNLVITVGVLGLASFSLSRLNVPKRKA 120 Query: 121 FYFFFLMTLFIPATSYMIPNFVNLKELGLLNQYAAFWLPAGANTFYFLLLKNFFDGIHPE 180 YFFF+MTLFIP T+Y+IPNFVNLK+LGL+N +AAFWLPAGAN F+ LLLKNFFD IH E Sbjct: 121 VYFFFMMTLFIPPTTYIIPNFVNLKDLGLMNSFAAFWLPAGANAFFLLLLKNFFDEIHYE 180 Query: 181 IFEAARIDGASEPRSFFSIAVPLSIPIFATLAIFIFSTAWNDWFWPSLVMHSEDKYTLAT 240 IFEAARIDGAS+ RSF IA+PLS+PIF+TLAIFIFS++WNDWFWPSL+MH++ Y LAT Sbjct: 181 IFEAARIDGASDWRSFVQIALPLSVPIFSTLAIFIFSSSWNDWFWPSLIMHNDSHYPLAT 240 Query: 241 AIYKYVIAVKALNTNIKFAILFLVSLPPILVFLLFQKFIMRGVALSAVKG 290 AIYKYVI K L NI+FAIL +V LPPI+VFL+FQK+IMRG+ L VKG Sbjct: 241 AIYKYVINAKGLALNIRFAILTMVMLPPIVVFLIFQKYIMRGLHLGGVKG 290 >C0V1T3.1 C0V1T3_9BACT Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 312 Score = 194 bits (494), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 166/294 (56%), Gaps = 7/294 (2%) Query: 2 KSADRGILSEHDLKKTSNKIVYGIMVFFILVMVFTMLYPILMTMFNGLKSNTEVNSFPPH 61 ++ +R ++S DL+ +++Y ++ +L + T L+P+ N K E+ FPP Sbjct: 21 EAHERSLISPMDLRTWRYRLLYAAILLVLLGALATALFPLYWMFTNAFKPTAEIYKFPPS 80 Query: 62 FFPQEWHFGNLKDALNYIDLLVFLRNTLYIFVGNMAVTLIVLGLASFSISRMNVPYRKVF 121 PQ W+ N K + RNTL I +G + + + V +A +++S++ +V Sbjct: 81 LVPQSWNPANFKLIWEVFPFPKYFRNTLVIALGTLLLQITVSSMAGYALSKLRPALGRVV 140 Query: 122 YFFFLMTLFIPATSYMIPNFVNLKELGLL-----NQYAAFWLPAGANTFYFLLLKNFFDG 176 FL TL +P+ +Y+IP F+N++ L +L N Y A WLPA A+ F L K FFD Sbjct: 141 LLAFLSTLMVPSVAYLIPQFLNIRSLPILHISLFNTYWAIWLPAAASAFNIFLFKGFFDE 200 Query: 177 IHPEIFEAARIDGASEPRSFFSIAVPLSIPIFATLAIFIFSTAWNDWFWPSLVMHSEDKY 236 I E+ EAAR+DGAS + F+ I +PLS P+ A + IF F+ +WND+ WP LV+ +K Sbjct: 201 IPNELVEAARVDGASTLQIFWRIILPLSRPVLAVVGIFTFTGSWNDFLWPLLVIQDPNKQ 260 Query: 237 TLATAIYKYVIAVKALNTNIKFAILFLVSLPPILVFLLFQKFIMRGVALSAVKG 290 ++ A+ Y + + N A L + +LPPILV LLFQ+ ++RG+A + + G Sbjct: 261 PVSVAL--YYLNTSNVQWNAMMAALLITALPPILVALLFQRQLVRGIAFTGLTG 312 >B8E1H9.1 B8E1H9_DICTD Binding-protein-dependent transport systems inner membrane component Length = 292 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 163/289 (56%), Gaps = 5/289 (1%) Query: 3 SADRGILSEHDLKKTSNKIVYGIMVFFILVMVFTMLYPILMTMFNGLKSNTE-VNSFPPH 61 D GIL +D K+ + + +Y ++ L+ VF ++PIL T+ +G K E VN P Sbjct: 8 KKDYGILRSYDFKRNAIRFLYILVYLVSLIAVFIAVFPILWTILSGFKDLREFVNE--PK 65 Query: 62 FFPQEWHFGNLKDALNYIDLLVFLRNTLYIFVGNMAVTLIVLGLASFSISRMNVPYRKVF 121 FP+ + + ++ F N+ + VG++ +I GL +++S++ K+ Sbjct: 66 IFPRTYDINKFIETWKILNFGRFYLNSFIVVVGSIFFAVIGNGLLGYALSKIKPKGYKLI 125 Query: 122 YFFFLMTLFIPATSYMIPNFVNLKELGLLNQYAAFWLPAGANTFYFLLLKNFFDGIHPEI 181 Y+ L +L IP T+ ++P F+N+ LGL + WL AGAN F+ +L KNFFD I I Sbjct: 126 YYLLLWSLMIPTTTSIVPLFINIVRLGLQGSFIPLWLSAGANAFFVILYKNFFDSIPQSI 185 Query: 182 FEAARIDGASEPRSFFSIAVPLSIPIFATLAIFIFSTAWNDWFWPSLVMHSEDKYTLATA 241 EAARIDGA E FF + PLS PI + IF + AW+D+ P L++++ K T+ Sbjct: 186 IEAARIDGAGEWSIFFKVVFPLSYPINTVITIFTINGAWSDFLLPYLLLNNTGKETVMVR 245 Query: 242 IYKYVIAVKALNTNIKFAILFLVSLPPILVFLLFQKFIMRGVALSAVKG 290 ++++ +V A + +I A+ F + +PPIL+F FQK++M G+ +KG Sbjct: 246 LFQFRTSV-ATDVDIIRAVTFSI-IPPILLFAFFQKYMMEGMTRGGIKG 292 >B5GAW6.1 B5GAW6_9ACTO ABC transporter permease protein Length = 307 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 160/292 (54%), Gaps = 11/292 (3%) Query: 6 RGILSEHDLKKTSNKIVYGIMVFFILVMVFTM--LYPILMTMFNGLKSNTEVNSFPPHFF 63 R ++S L T K++Y + F ++V+ F + L+P+ + K E+ PP F Sbjct: 20 RTLVSPLALASTKGKVLYWTL-FALVVIAFALAFLFPVYWMVTGAAKPAGELTRTPPTLF 78 Query: 64 PQEWHFGNLKDALNYIDLLVFLRNTLYIFVGNMAVTLIVLGLASFSISRMNVPYRKVFYF 123 P+ W F N DA + +DL L NT+ VG A+ ++ A++S+S++ + KV Sbjct: 79 PEHWKFSNYSDAWDQMDLPTHLWNTVVQAVGAWALQIVFCTAAAYSLSKLKPAFGKVVLG 138 Query: 124 FFLMTLFIPATSYMIPNFVNLKEL-----GLLNQYAAFWLPAGANTFYFLLLKNFFDGIH 178 L TL +PA + ++P ++ + +L LLN WLPA AN F LLKNFFD I Sbjct: 139 GILATLMVPAQAMLVPKYLTVADLPLIHVSLLNDPLGIWLPAVANAFNLYLLKNFFDQIP 198 Query: 179 PEIFEAARIDGASEPRSFFSIAVPLSIPIFATLAIFIFSTAWNDWFWPSLVMHSEDKYTL 238 ++ EAA IDGA + R +SI +P+S P+ A ++I W D+ WP +V DK + Sbjct: 199 RDVLEAAEIDGAGKLRQLWSILLPMSRPVLAVVSILGLVAVWQDFLWPLMVFSDTDKQPI 258 Query: 239 ATAIYKYVIAVKALNTNIKFAILFLVSLPPILVFLLFQKFIMRGVALSAVKG 290 + A+ ++ + ++ + + + + S+P +LVFL+FQ+ I+ G++ + KG Sbjct: 259 SVALVQF---SQNISQSTQIGAMVIASIPMLLVFLVFQRHIIAGISAGSTKG 307 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.144 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,606,640,849 Number of extensions: 65405067 Number of successful extensions: 260390 Number of sequences better than 1.0e-05: 5885 Number of HSP's gapped: 252752 Number of HSP's successfully gapped: 5886 Length of query: 290 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 156 Effective length of database: 1,798,280,193 Effective search space: 280531710108 Effective search space used: 280531710108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)