BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0030.p (307 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K591.1 B3K591_9BACI Binding-protein-dependent transport system... 449 e-124 B1DIP5.1 B1DIP5_9BACL Binding-protein-dependent transport system... 421 e-116 C0V1T4.1 C0V1T4_9BACT Carbohydrate ABC transporter membrane prot... 238 4e-61 B5GHD3.1 B5GHD3_9ACTO Sugar transporter intracellular portion 210 1e-52 C0UXH0.1 C0UXH0_9BACT Carbohydrate ABC transporter membrane prot... 209 2e-52 >B3K591.1 B3K591_9BACI Binding-protein-dependent transport systems inner membrane component Length = 311 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/296 (70%), Positives = 255/296 (86%), Gaps = 1/296 (0%) Query: 12 PAKLERKPHKQNR-WKKNFWGYMFLLPAIIIFVLFMWVPIFKGFMYSFYTVDFVKGNTFA 70 P + K HK+ W+K WGY+FL+PAI IF++F+WVPIFKG YSF+ +DFVKGNTF Sbjct: 15 PGRRAGKEHKRKPLWRKYVWGYLFLVPAIAIFIVFLWVPIFKGIFYSFFHIDFVKGNTFV 74 Query: 71 GLDNYARALTDPDVLIAVKNTLYYMVLCLVIGFWVPIAFAIAISELRKFGGFVRVAAYLP 130 G DNYA L++PD+L++V+NTLY+M+L LVIGFWVPIA +IAISEL+ F GF R+AAYLP Sbjct: 75 GFDNYANVLSNPDLLLSVRNTLYFMLLTLVIGFWVPIAASIAISELKLFQGFARIAAYLP 134 Query: 131 FVLPAVVLYGLWRWLYDPVGPINALLGTMGADQISFLTDSRWSMISLVFMETWQQFGSGM 190 FV+P VVLYG+WRW+YDPVGP+NAL G GA+ +SF++DSR+SM+SLV METWQQFGS M Sbjct: 135 FVVPGVVLYGMWRWMYDPVGPVNALFGFFGAEPVSFISDSRFSMVSLVVMETWQQFGSAM 194 Query: 191 LIYLAAVLSIPRDWYEAAEIDGAGVWARIRHITLPSLRNLIVLMLILQIIATSQGYQSQL 250 LIYLA VLSIP+DWYEAAEIDGAGVWARI++ITLPS+RNLIVLMLILQ+I TSQ YQSQL Sbjct: 195 LIYLAGVLSIPKDWYEAAEIDGAGVWARIKYITLPSMRNLIVLMLILQLIGTSQAYQSQL 254 Query: 251 ALLDGGPNNTTLTYALLIVKYAFTRLDYGTATALGMLMFIVLGGLGIVQFKLNKED 306 A+LDGGPN TLTYALL VKYAF +LDYG TA+G+LMF+VL LGI+QFK+N+E+ Sbjct: 255 AMLDGGPNKATLTYALLTVKYAFNQLDYGAGTAMGILMFLVLSLLGILQFKMNREE 310 >B1DIP5.1 B1DIP5_9BACL Binding-protein-dependent transport systems inner membrane component Length = 308 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 216/301 (71%), Positives = 250/301 (83%), Gaps = 2/301 (0%) Query: 8 HETMPAKLERKPHKQNRWKKNFWGYMFLLPAIIIFVLFMWVPIFKGFMYSFYTVDFVKGN 67 H A LERK +K+FWG +FLLPA IIF+LF+WVPIFKGF+YSFY +DFVKGN Sbjct: 4 HAVANAPLERKGRFAVFLRKHFWGLLFLLPAFIIFILFLWVPIFKGFIYSFYHIDFVKGN 63 Query: 68 TFAGLDNYARALTDPDVLIAVKNTLYYMVLCLVIGFWVPIAFAIAISELRKFGGFVRVAA 127 +F G DNY AL D D AVKNT+YYM LCLVIGFW+PI FAIAISELR+F G VRVAA Sbjct: 64 SFVGFDNYKVALHDKDAWTAVKNTVYYMFLCLVIGFWIPIVFAIAISELRRFQGVVRVAA 123 Query: 128 YLPFVLPAVVLYGLWRWLYDPVGPINALL-GTMGADQ-ISFLTDSRWSMISLVFMETWQQ 185 YLP ++P VVLYGLWRW YDPVGPIN ++ G GAD+ +SF+TD++WSMISLV ME+WQQ Sbjct: 124 YLPNIIPVVVLYGLWRWFYDPVGPINGVITGWFGADEPVSFMTDTKWSMISLVIMESWQQ 183 Query: 186 FGSGMLIYLAAVLSIPRDWYEAAEIDGAGVWARIRHITLPSLRNLIVLMLILQIIATSQG 245 FGS MLIYLAAVLSIPRDWYEAAEIDGAGVW RIRHITLPS++ L+ L+LILQ+I TSQG Sbjct: 184 FGSAMLIYLAAVLSIPRDWYEAAEIDGAGVWNRIRHITLPSIKGLLGLLLILQLIGTSQG 243 Query: 246 YQSQLALLDGGPNNTTLTYALLIVKYAFTRLDYGTATALGMLMFIVLGGLGIVQFKLNKE 305 YQSQLA+LDGGPNN TLTYALLIVKYAF + +YG A ALG+LMFIVLG L IVQ++L + Sbjct: 244 YQSQLAMLDGGPNNATLTYALLIVKYAFNQQNYGVAAALGVLMFIVLGLLAIVQYRLQGK 303 Query: 306 D 306 + Sbjct: 304 E 304 >C0V1T4.1 C0V1T4_9BACT Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 309 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 130/287 (45%), Positives = 180/287 (62%), Gaps = 1/287 (0%) Query: 20 HKQNRWKKNFWGYMFLLPAIIIFVLFMWVPIFKGFMYSFYTVDFVKGNTFAGLDNYARAL 79 H + + + Y FLLPA+++F LF W PI KGF + V + GL N+ L Sbjct: 19 HIRRKVLEQATAYAFLLPALLVFALFSWYPILKGFTVALQQVTLGGEARWVGLANFRYVL 78 Query: 80 TDPDVLIAVKNTLYYMVLCLVIGFWVPIAFAIAISELRKFGGFVRVAAYLPFVLPAVVLY 139 +DP + IA +NTLY+ L LVIGF+VP+ AI ++E+R+ RV YLP ++P VV+ Sbjct: 79 SDPLLPIAWRNTLYFAGLGLVIGFFVPVVLAILVNEVRRGQALFRVGFYLPSIMPLVVVV 138 Query: 140 GLWRWLYDP-VGPINALLGTMGADQISFLTDSRWSMISLVFMETWQQFGSGMLIYLAAVL 198 LW+W+YDP G +N +L ++G Q+ + D + +M SLV M TW G+ LIYLAA+ Sbjct: 139 LLWKWIYDPGNGLLNGVLQSLGLPQLGWYQDPKLAMPSLVIMSTWTYAGATTLIYLAALQ 198 Query: 199 SIPRDWYEAAEIDGAGVWARIRHITLPSLRNLIVLMLILQIIATSQGYQSQLALLDGGPN 258 IP YEAAEIDGA V R+R+ITLP LR ++++MLILQII T Q + + GGPN Sbjct: 199 GIPAHLYEAAEIDGATVLQRMRYITLPQLRGVMLIMLILQIIGTMQVFTEPFVMTGGGPN 258 Query: 259 NTTLTYALLIVKYAFTRLDYGTATALGMLMFIVLGGLGIVQFKLNKE 305 N TLT LLI +YAF ++G ATALG+++F+VL I F L + Sbjct: 259 NATLTVMLLIYQYAFAYSNFGAATALGLMLFVVLVVFSIAYFVLTRR 305 >B5GHD3.1 B5GHD3_9ACTO Sugar transporter intracellular portion Length = 313 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 118/270 (43%), Positives = 156/270 (57%), Gaps = 2/270 (0%) Query: 12 PAKLERKPHK-QNRWKKNFWGYMFLLPAIIIFVLFMWVPIFKGFMYSFYTVDFVKGNTFA 70 PA P + + R + + +FLLPA+ F F W P+ KG SF + V + Sbjct: 15 PAATSPPPRRFRARLRNDLVAALFLLPALFCFGYFAWWPVLKGLELSFQQTNLVDAAQWV 74 Query: 71 GLDNYARALTDPDVLIAVKNTLYYMVLCLVIGFWVPIAFAIAISELRKFGGFVRVAAYLP 130 GLDN+ R DP V AV+NTL + L LVIGF +P+A A+ IS +R+ G R YLP Sbjct: 75 GLDNFRRVFEDPLVTTAVENTLLFAGLALVIGFPIPLALALQISTVRRLPGLYRYLVYLP 134 Query: 131 FVLPAVVLYGLWRWLYDP-VGPINALLGTMGADQISFLTDSRWSMISLVFMETWQQFGSG 189 +LP VV LW+ YDP G NA+LG +G +L + +M+SLV TW G+ Sbjct: 135 VMLPPVVSVLLWKAFYDPDSGLFNAVLGLVGLGPYPWLQSTHTAMLSLVLEATWAGLGTA 194 Query: 190 MLIYLAAVLSIPRDWYEAAEIDGAGVWARIRHITLPSLRNLIVLMLILQIIATSQGYQSQ 249 LIYLAA+ +P + YEAAE DGAG+W R HI LP LR ++L+L+LQ I T Q + Sbjct: 195 TLIYLAALTRVPPELYEAAETDGAGIWRRAWHIALPQLRGTVLLLLLLQFIGTLQAFTEP 254 Query: 250 LALLDGGPNNTTLTYALLIVKYAFTRLDYG 279 + DGGP N T+T LLI +YAF DYG Sbjct: 255 FVMTDGGPQNATVTVLLLIYRYAFVDGDYG 284 >C0UXH0.1 C0UXH0_9BACT Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 307 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 110/281 (39%), Positives = 173/281 (61%), Gaps = 2/281 (0%) Query: 24 RWKKNFWGYMFLLPAIIIFVLFMWVPIFKGFMYSFYTVDFVKGNTFAGLDNYARALTDPD 83 R ++N Y++++PA+++F +F+W PI + F+ SF VD GL N+ +TDP Sbjct: 21 RVRRNVVAYLYIVPALVLFAVFLWWPILQAFIVSFQHVDLSFQPRCVGLQNFRDVITDPL 80 Query: 84 VLIAVKNTLYYMVLCLVIGFWVPIAFAIAISELRKFGGFVRVAAYLPFVLPAVVLYGLWR 143 A +NTLYY +L + + +P+ FAIA++E+ ++R A YLP VLP +V LW Sbjct: 81 FFTAWRNTLYYTILAALFAYIIPVIFAIAVNEM-PMKSYLRTAFYLPAVLPPIVTALLWG 139 Query: 144 WLYDPVGPI-NALLGTMGADQISFLTDSRWSMISLVFMETWQQFGSGMLIYLAAVLSIPR 202 W+Y P G + N +L +G + I++L + + S++ M TW G ML YLAA+ ++P Sbjct: 140 WIYQPEGGLANTILHMVGLNPINWLESEKTVIPSILIMTTWGGMGGTMLYYLAALNAVPS 199 Query: 203 DWYEAAEIDGAGVWARIRHITLPSLRNLIVLMLILQIIATSQGYQSQLALLDGGPNNTTL 262 D YEAAE+DGA + R +IT+P +R ++ L L+ QII T Q + AL DGGPNN ++ Sbjct: 200 DLYEAAELDGANILQRAIYITIPQIRPIMWLFLVGQIIGTMQIFTEVFALTDGGPNNASV 259 Query: 263 TYALLIVKYAFTRLDYGTATALGMLMFIVLGGLGIVQFKLN 303 T LL+ +YAF ++G A+ALG+++FI L I+ ++ Sbjct: 260 TLMLLLYRYAFQYNEFGKASALGVILFIFLSAFSIMYMRMT 300 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.143 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,879,758,247 Number of extensions: 79100967 Number of successful extensions: 270966 Number of sequences better than 1.0e-05: 5872 Number of HSP's gapped: 261412 Number of HSP's successfully gapped: 5876 Length of query: 307 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 172 Effective length of database: 1,788,859,178 Effective search space: 307683778616 Effective search space used: 307683778616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)